Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Forward (+)

7205477 .. 7208613

Gene Structure 3137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGAAATGCGAACGGCAAAGACGAAGACGCCGCCGCCGGTAGCGGTGGTGCAGATGTTACCTCGTCCTCGGCGAGATCTAATGGCGGCGATCCTTCTGCACGCAGTCGTCACCGTCGTCCTTCTTCAGACTCTATGAGCAGTTCTCCTCCCGGAAGTCCTGCTCGATCTCCATCTCCTTTCTTATTCGCTCCTCAGGTTCCCGTGGCTCCATTGCAGAGAGCAAACGCCCCTCCTCCTAATAACATCCAATGGAACCAATCACAGAGAGTTTTTGATAATCCCCCAGAGCAAGGAATCCCTACCATCATTACATGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCATGGGACAATTGGAGATCAAGGAAGAAGCTGCAGAAATCAGGGAAAGACCACTCGATTCTCTTTGTCCTTCCATCTGGCATATACCACTACAAGGTGATTGTGGACGGTGAATCCAAATACATCCCAGATTTACCCTTTGTAGCAGACGAAGTTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAAAACCCAGAAAGCATAGTGGAGTTTGAGGCGCCACCATCACCTGATCATAGCTACGGTCAAACCCTACCAGCCGCAGAAGATTACGCGAAAGAGCCACTGGCGGTGCCACCTCAGCTTCATCTAACACTTCTTGGCACTACTGAAGAGACAGCCATAGCCACAAAGCCTCAACATGTGGTGCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTTAACCCACAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

283

Amino Acids

30.72

Weight (kDa)

5.7

Isoelectric Point (pI)

70.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	100 - 180	1.1e-29	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	213 - 280	2.2e-21	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	580, 655
AccBSI	CCGCTC	1 cut(s)	841
AccII	CGCG	1 cut(s)	638
AciI	CCGC	8 cut(s)	33, 36, 45, 87, 341, 624, 653, 839
AclWI	GGATC	2 cut(s)	86, 358
AcuI	CTGAAG	2 cut(s)	111, 714
AcyI	GRCGYC	2 cut(s)	30, 581
AfaI	GTAC	1 cut(s)	815
AfiI	CCNNNNNNNGG	2 cut(s)	293, 445
AflIII	ACRYGT	1 cut(s)	724
AluBI	AGCT	4 cut(s)	382, 603, 667, 782
AluI	AGCT	4 cut(s)	382, 603, 667, 782
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	86, 358
ApeKI	GCWGC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	104, 460, 473, 582
AxyI	CCTNAGG	1 cut(s)	195
BanI	GGYRCC	2 cut(s)	580, 655
BbsI	GAAGAC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	5 cut(s)	181, 314, 433, 595, 753
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	584
BglII	AGATCT	1 cut(s)	77
BisI	GCNGC	5 cut(s)	33, 36, 88, 383, 624
BlsI	GCNGC	5 cut(s)	34, 37, 89, 384, 625
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	6 cut(s)	201, 210, 257, 320, 582, 657
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu10I	CCTNAGC	1 cut(s)	663
BpuMI	CCSGG	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	172
BsaHI	GRCGYC	2 cut(s)	30, 581
BsaJI	CCNNGG	3 cut(s)	69, 204, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 445
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	654
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	212, 517
Bse8I	GATNNNNATC	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	69, 204, 322
BseGI	GGATG	3 cut(s)	246, 474, 764
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	293, 445
BseMI	GCAATG	2 cut(s)	212, 517
BseMII	CTCAG	2 cut(s)	209, 677
BseNI	ACTGG	1 cut(s)	654
BseRI	GAGGAG	4 cut(s)	138, 183, 225, 756
BseXI	GCAGC	1 cut(s)	369
BsgI	GTGCAG	2 cut(s)	72, 84
Bsh1236I	CGCG	1 cut(s)	638
BshNI	GGYRCC	2 cut(s)	580, 655
BsiSI	CCGG	2 cut(s)	39, 153
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	293, 445
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	371
Bsp143I	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
BspACI	CCGC	8 cut(s)	33, 36, 45, 87, 341, 624, 653, 839
BspCNI	CTCAG	2 cut(s)	208, 676
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	6 cut(s)	201, 210, 257, 320, 582, 657
BspMAI	CTGCAG	1 cut(s)	387
BspPI	GGATC	2 cut(s)	86, 358
BspT107I	GGYRCC	2 cut(s)	580, 655
BsrBI	CCGCTC	1 cut(s)	841
BsrDI	GCAATG	2 cut(s)	212, 517
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	654
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	69, 204, 322
BssMI	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
BssNI	GRCGYC	2 cut(s)	30, 581
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	5 cut(s)	116, 461, 608, 823, 849
Bst6I	CTCTTC	1 cut(s)	690
BstACI	GRCGYC	2 cut(s)	30, 581
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	195, 663, 810
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	246, 474, 764
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	6 cut(s)	80, 94, 170, 353, 371, 598
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	664
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	383
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	246, 474, 764
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	38
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	814
CviAII	CATG	4 cut(s)	315, 354, 725, 740
CviQI	GTAC	1 cut(s)	814
DdeI	CTNAG	3 cut(s)	195, 663, 810
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	6 cut(s)	79, 93, 169, 352, 370, 597
DpnII	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	111, 714
Eco81I	CCTNAGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	322
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	318, 357, 728, 743
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	314, 353, 724, 739
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	33, 36, 88, 383, 624
FokI	GGATG	3 cut(s)	233, 461, 771
Fsp4HI	GCNGC	5 cut(s)	33, 36, 88, 383, 624
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	5 cut(s)	33, 36, 88, 383, 624
HaeII	RGCGCY	1 cut(s)	584
HapII	CCGG	2 cut(s)	39, 153
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	2 cut(s)	30, 581
Hin1II	CATG	4 cut(s)	318, 357, 728, 743
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	6 cut(s)	131, 297, 409, 464, 763, 806
HpaII	CCGG	2 cut(s)	39, 153
HphI	GGTGA	4 cut(s)	104, 460, 473, 582
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	105, 132, 341, 431
HpyCH4III	ACNGT	5 cut(s)	116, 461, 608, 823, 849
HpyCH4V	TGCA	4 cut(s)	53, 101, 217, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	664
HpyF3I	CTNAG	3 cut(s)	195, 663, 810
Hsp92I	GRCGYC	2 cut(s)	30, 581
Hsp92II	CATG	4 cut(s)	318, 357, 728, 743
HspAI	GCGC	1 cut(s)	581
KasI	GGCGCC	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
LmnI	GCTCC	2 cut(s)	196, 214
Lsp1109I	GCAGC	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	58, 110, 518
MalI	GATC	6 cut(s)	79, 93, 169, 352, 370, 597
MbiI	CCGCTC	1 cut(s)	841
MboI	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
MboII	GAAGA	5 cut(s)	38, 117, 388, 641, 707
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	1 cut(s)	361
Mly113I	GGCGCC	1 cut(s)	581
MlyI	GAGTC	3 cut(s)	125, 757, 815
MseI	TTAA	2 cut(s)	735, 791
MspI	CCGG	2 cut(s)	39, 153
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	1 cut(s)	664
NarI	GGCGCC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
NlaIII	CATG	4 cut(s)	318, 357, 728, 743
NlaIV	GGNNCC	6 cut(s)	201, 210, 257, 320, 582, 657
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	728
PciI	ACATGT	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 71, 115
PfeI	GAWTC	3 cut(s)	297, 409, 464
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	34, 37, 89, 384, 625
PleI	GAGTC	3 cut(s)	125, 757, 814
PluTI	GGCGCC	1 cut(s)	584
PpsI	GAGTC	3 cut(s)	125, 757, 814
PscI	ACATGT	1 cut(s)	724
PspN4I	GGNNCC	6 cut(s)	201, 210, 257, 320, 582, 657
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	1 cut(s)	815
RsaNI	GTAC	1 cut(s)	814
SaqAI	TTAA	2 cut(s)	735, 791
SatI	GCNGC	5 cut(s)	33, 36, 88, 383, 624
Sau3AI	GATC	6 cut(s)	77, 91, 167, 350, 368, 595
SchI	GAGTC	3 cut(s)	125, 757, 815
ScrFI	CCNGG	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	383
SfoI	GGCGCC	1 cut(s)	582
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	8 cut(s)	33, 36, 45, 87, 341, 624, 653, 839
SspDI	GGCGCC	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	5 cut(s)	116, 461, 608, 823, 849
TaqI	TCGA	4 cut(s)	166, 407, 528, 804
TasI	AATT	1 cut(s)	361
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	4 cut(s)	35, 38, 90, 626
TfiI	GAWTC	3 cut(s)	297, 409, 464
Tru1I	TTAA	2 cut(s)	735, 791
Tru9I	TTAA	2 cut(s)	735, 791
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	524, 659, 736
TspRI	CASTG	1 cut(s)	654
XceI	RCATGY	1 cut(s)	728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.