Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Forward (+)

367359 .. 370709

Gene Structure 3351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGAATGTGAATGGGAGAGAAGATGGCGGCGGAAGCCCATCGGCGGCGGCGGCAGAGGAAGAGGCCGGTGGCGGGACCTCCCAGCAGGAGGGTCATCACCCCCTTCCGCCTCCACTTGGCGCCGGCGCCGGCGGCCGAGGCGGCGTAGGCGCGGTGGCTGAATTGATGGGTCAGTCACCTCCTCATAGCCCTAGGGCTACTCACTCCCCTTTGATGTTCACTCCCCAAGTCCCCGTTGTTCCGTTACAAAGACCTGATGAGATGCAGATCCCAAACCCCTCATGGATGCAGACTTCAGCGTATGAAGACATCTCCTGTGAGCAAGGAATTCCAACCATGATTACGTGGAGCTATGGTGGGAAGGACGTAGCTGTGGAGGGATCATGGGATGATTGGAAGACAAGGTTGGCCTTACAGAGATCAGGGAAGGACTTCACTATTATGAAAGTACTGCCATCCGGTGTTTACCAGTATAGGTTTGTTGTTGATGGGCAGTGGAGGTGTGCTCCAGACTTGCCTTTGGCCCAAGATGATGCTGGAAATTCTTACAACCTTTTGGACTTGCAGGATTATGTTCCAGAAGACATTGGAAGCATTTCTGGTTTTGAACCTCCCCAGTCACCCGACTCGAGTTATAGCAACATGCAACTTGGATCTGAAGATTTTGCGAAGGAGCCACCATTGGTACCTCCACATCTGCAGATGACGCTGCTCAATGCCCCAGCATCTTACATGGAGATGCCGCCTCCTTTATCGAGACCTCAACATGTTGTACTTAATCATCTGTACATGCAGAGAGGGAAGAGTGGCCCATCTGTGGTCGCACTTGGCACAACAGAGAGGTTTATAGCAAAGTATGTGACAGTTGTTCTCTACAAGTCTTTGCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

298

Amino Acids

32.17

Weight (kDa)

4.96

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	111 - 190	6e-32	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	223 - 295	2.3e-25	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	688
AccB1I	GGYRCC	3 cut(s)	122, 128, 688
AccII	CGCG	1 cut(s)	155
AclWI	GGATC	3 cut(s)	265, 391, 664
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	330, 544
AcuI	CTGAAG	2 cut(s)	282, 681
AcyI	GRCGYC	2 cut(s)	123, 129
AfaI	GTAC	4 cut(s)	453, 690, 777, 791
AfiI	CCNNNNNNNGG	5 cut(s)	46, 75, 91, 119, 820
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	2 cut(s)	354, 374
AluI	AGCT	2 cut(s)	354, 374
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	3 cut(s)	265, 391, 664
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	5 cut(s)	66, 136, 411, 525, 811
ApeKI	GCWGC	1 cut(s)	712
ApoI	RAATTY	2 cut(s)	330, 544
Asp700I	GAANNNNTTC	2 cut(s)	434, 598
Asp718I	GGTACC	1 cut(s)	688
AspA2I	CCTAGG	1 cut(s)	194
AspLEI	GCGC	3 cut(s)	125, 131, 155
AspS9I	GGNCC	3 cut(s)	78, 526, 812
AsuHPI	GGTGA	3 cut(s)	92, 171, 615
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	78
AvrII	CCTAGG	1 cut(s)	194
BanI	GGYRCC	3 cut(s)	122, 128, 688
BbsI	GAAGAC	3 cut(s)	315, 407, 591
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	699
BccI	CCATC	6 cut(s)	20, 49, 163, 466, 485, 823
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	701
BfoI	RGCGCY	2 cut(s)	126, 132
BglI	GCCNNNNNGGC	1 cut(s)	144
BisI	GCNGC	8 cut(s)	31, 48, 51, 54, 136, 145, 713, 746
BlnI	CCTAGG	1 cut(s)	194
BlsI	GCNGC	8 cut(s)	32, 49, 52, 55, 137, 146, 714, 747
BmcAI	AGTACT	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	3 cut(s)	78, 526, 812
BmiI	GGNNCC	5 cut(s)	79, 124, 130, 678, 690
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	5 cut(s)	255, 279, 526, 732, 737
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	3 cut(s)	315, 407, 591
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	123, 129
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	2 cut(s)	139, 194
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 75, 91, 119, 820
Bse118I	RCCGGY	3 cut(s)	68, 125, 131
Bse1I	ACTGG	2 cut(s)	472, 619
Bse8I	GATNNNNATC	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	139, 194
BseGI	GGATG	3 cut(s)	294, 397, 458
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	5 cut(s)	46, 75, 91, 119, 820
BseNI	ACTGG	2 cut(s)	472, 619
BseRI	GAGGAG	1 cut(s)	174
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	699
BseYI	CCCAGC	2 cut(s)	84, 724
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	68, 138, 413, 527, 813
BshNI	GGYRCC	3 cut(s)	122, 128, 688
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	4 cut(s)	69, 126, 132, 462
BslFI	GGGAC	2 cut(s)	91, 218
BslI	CCNNNNNNNGG	5 cut(s)	46, 75, 91, 119, 820
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	2 cut(s)	91, 218
BsnI	GGCC	5 cut(s)	68, 138, 413, 527, 813
Bso31I	GGTCTC	1 cut(s)	754
BsoBI	CYCGRG	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	4 cut(s)	270, 383, 422, 656
BspANI	GGCC	5 cut(s)	68, 138, 413, 527, 813
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	5 cut(s)	79, 124, 130, 678, 690
BspMAI	CTGCAG	1 cut(s)	705
BspPI	GGATC	3 cut(s)	265, 391, 664
BspT107I	GGYRCC	3 cut(s)	122, 128, 688
BspTNI	GGTCTC	1 cut(s)	754
BsrFI	RCCGGY	3 cut(s)	68, 125, 131
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	472, 619
BssAI	RCCGGY	3 cut(s)	68, 125, 131
BssECI	CCNNGG	2 cut(s)	139, 194
BssMI	GATC	4 cut(s)	270, 383, 422, 656
BssNI	GRCGYC	2 cut(s)	123, 129
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	2 cut(s)	57, 800
BstACI	GRCGYC	2 cut(s)	123, 129
BstAUI	TGTACA	1 cut(s)	789
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	127, 133
BstF5I	GGATG	3 cut(s)	294, 397, 458
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	2 cut(s)	126, 132
BstHHI	GCGC	3 cut(s)	125, 131, 155
BstKTI	GATC	4 cut(s)	273, 386, 425, 659
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	4 cut(s)	270, 383, 422, 656
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 53, 135, 141, 144, 150, 709
BstNSI	RCATGY	3 cut(s)	649, 773, 796
BstSFI	CTRYAG	1 cut(s)	701
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	699
BstV2I	GAAGAC	3 cut(s)	315, 407, 591
BstX2I	RGATCY	2 cut(s)	270, 656
BstYI	RGATCY	2 cut(s)	270, 656
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	5 cut(s)	68, 138, 413, 527, 813
BtsCI	GGATG	3 cut(s)	294, 397, 458
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	127, 133
CfoI	GCGC	3 cut(s)	125, 131, 155
Cfr10I	RCCGGY	3 cut(s)	68, 125, 131
Cfr13I	GGNCC	3 cut(s)	78, 526, 812
CseI	GACGC	1 cut(s)	718
Csp6I	GTAC	4 cut(s)	452, 689, 776, 790
CviAII	CATG	7 cut(s)	285, 340, 387, 646, 736, 770, 793
CviQI	GTAC	4 cut(s)	452, 689, 776, 790
DinI	GGCGCC	2 cut(s)	124, 130
DpnI	GATC	4 cut(s)	272, 385, 424, 658
DpnII	GATC	4 cut(s)	270, 383, 422, 656
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	57, 800
EarI	CTCTTC	2 cut(s)	57, 800
EciI	GGCGGA	2 cut(s)	48, 99
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	282, 681
Eco88I	CYCGRG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	194
EgeI	GGCGCC	2 cut(s)	124, 130
EheI	GGCGCC	2 cut(s)	124, 130
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	7 cut(s)	288, 343, 390, 649, 739, 773, 796
FaqI	GGGAC	2 cut(s)	91, 218
FatI	CATG	7 cut(s)	284, 339, 386, 645, 735, 769, 792
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	8 cut(s)	31, 48, 51, 54, 136, 145, 713, 746
FokI	GGATG	3 cut(s)	301, 404, 445
Fsp4HI	GCNGC	8 cut(s)	31, 48, 51, 54, 136, 145, 713, 746
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	3 cut(s)	124, 130, 154
GluI	GCNGC	8 cut(s)	31, 48, 51, 54, 136, 145, 713, 746
GsaI	CCCAGC	2 cut(s)	88, 728
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	2 cut(s)	126, 132
HaeIII	GGCC	5 cut(s)	68, 138, 413, 527, 813
HapII	CCGG	4 cut(s)	69, 126, 132, 462
HgaI	GACGC	1 cut(s)	718
HhaI	GCGC	3 cut(s)	125, 131, 155
Hin1I	GRCGYC	2 cut(s)	123, 129
Hin1II	CATG	7 cut(s)	288, 343, 390, 649, 739, 773, 796
Hin6I	GCGC	3 cut(s)	123, 129, 153
HinP1I	GCGC	3 cut(s)	123, 129, 153
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	4 cut(s)	69, 126, 132, 462
HphI	GGTGA	3 cut(s)	92, 171, 615
Hpy166II	GTNNAC	2 cut(s)	222, 469
Hpy188I	TCNGA	1 cut(s)	661
Hpy188III	TCNNGA	3 cut(s)	512, 581, 759
Hpy8I	GTNNAC	2 cut(s)	222, 469
HpyAV	CCTTC	4 cut(s)	116, 358, 424, 667
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	2 cut(s)	347, 369
HpyCH4V	TGCA	7 cut(s)	268, 292, 568, 649, 703, 796, 889
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 53, 135, 141, 144, 150, 709
HpySE526I	ACGT	2 cut(s)	347, 369
Hsp92I	GRCGYC	2 cut(s)	123, 129
Hsp92II	CATG	7 cut(s)	288, 343, 390, 649, 739, 773, 796
HspAI	GCGC	3 cut(s)	123, 129, 153
KasI	GGCGCC	2 cut(s)	122, 128
KpnI	GGTACC	1 cut(s)	692
KroI	GCCGGC	2 cut(s)	125, 131
KroNI	GCCGGC	2 cut(s)	127, 133
Kzo9I	GATC	4 cut(s)	270, 383, 422, 656
LmnI	GCTCC	3 cut(s)	351, 514, 676
Lsp1109I	GCAGC	1 cut(s)	699
LweI	GCATC	5 cut(s)	255, 279, 526, 732, 737
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	347, 369
MaeIII	GTNAC	4 cut(s)	177, 246, 621, 862
MalI	GATC	4 cut(s)	272, 385, 424, 658
MboI	GATC	4 cut(s)	270, 383, 422, 656
MboII	GAAGA	7 cut(s)	35, 74, 320, 412, 596, 674, 817
MflI	RGATCY	2 cut(s)	270, 656
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	164, 330, 544
Mly113I	GGCGCC	2 cut(s)	123, 129
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	359
MreI	CGCCGGCG	2 cut(s)	125, 131
MroNI	GCCGGC	2 cut(s)	125, 131
MroXI	GAANNNNTTC	2 cut(s)	434, 598
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	2 cut(s)	443, 740
MspI	CCGG	4 cut(s)	69, 126, 132, 462
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	7 cut(s)	36, 53, 135, 141, 144, 150, 709
NaeI	GCCGGC	2 cut(s)	127, 133
NarI	GGCGCC	2 cut(s)	123, 129
NdeII	GATC	4 cut(s)	270, 383, 422, 656
NgoMIV	GCCGGC	2 cut(s)	125, 131
NlaIII	CATG	7 cut(s)	288, 343, 390, 649, 739, 773, 796
NlaIV	GGNNCC	5 cut(s)	79, 124, 130, 678, 690
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	3 cut(s)	177, 621, 862
NspI	RCATGY	3 cut(s)	649, 773, 796
PaeR7I	CTCGAG	1 cut(s)	631
PciI	ACATGT	1 cut(s)	769
PdiI	GCCGGC	2 cut(s)	127, 133
PdmI	GAANNNNTTC	2 cut(s)	434, 598
PkrI	GCNGC	8 cut(s)	32, 49, 52, 55, 137, 146, 714, 747
PleI	GAGTC	1 cut(s)	623
PluTI	GGCGCC	2 cut(s)	126, 132
PpsI	GAGTC	1 cut(s)	623
Ppu21I	YACGTR	1 cut(s)	348
PpuMI	RGGWCCY	1 cut(s)	78
PscI	ACATGT	1 cut(s)	769
Psp5II	RGGWCCY	1 cut(s)	78
PspFI	CCCAGC	2 cut(s)	84, 724
PspN4I	GGNNCC	5 cut(s)	79, 124, 130, 678, 690
PspPI	GGNCC	3 cut(s)	78, 526, 812
PspPPI	RGGWCCY	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	705
PsuI	RGATCY	2 cut(s)	270, 656
RsaI	GTAC	4 cut(s)	453, 690, 777, 791
RsaNI	GTAC	4 cut(s)	452, 689, 776, 790
RseI	CAYNNNNRTG	2 cut(s)	443, 740
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	8 cut(s)	31, 48, 51, 54, 136, 145, 713, 746
Sau3AI	GATC	4 cut(s)	270, 383, 422, 656
Sau96I	GGNCC	3 cut(s)	78, 526, 812
ScaI	AGTACT	1 cut(s)	453
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	5 cut(s)	255, 279, 526, 732, 737
SfcI	CTRYAG	1 cut(s)	701
SfoI	GGCGCC	2 cut(s)	124, 130
Sfr274I	CTCGAG	1 cut(s)	631
SgrAI	CRCCGGYG	2 cut(s)	125, 131
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	2 cut(s)	443, 740
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	3 cut(s)	164, 330, 544
SspDI	GGCGCC	2 cut(s)	122, 128
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	2 cut(s)	350, 372
TaqI	TCGA	2 cut(s)	632, 758
TasI	AATT	3 cut(s)	164, 330, 544
TatI	WGTACW	3 cut(s)	451, 775, 789
TauI	GCSGC	7 cut(s)	33, 50, 53, 56, 138, 147, 748
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	3 cut(s)	177, 621, 862
TseI	GCWGC	1 cut(s)	712
Tsp45I	GTSAC	3 cut(s)	177, 621, 862
TspDTI	ATGAA	2 cut(s)	321, 461
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	2 cut(s)	330, 544
XceI	RCATGY	3 cut(s)	649, 773, 796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 536
XhoI	CTCGAG	1 cut(s)	631
XmaJI	CCTAGG	1 cut(s)	194
XmnI	GAANNNNTTC	2 cut(s)	434, 598
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.