Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Reverse (-)

55524366 .. 55529210

Gene Structure 4845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGCTCACGGACGGCTCAACAACTCCACCAGCGGCCTTAAACGCAGCTTCTCCGACGAGAATCGTAAACCCGACGCCTTTGCCAAGAGGCAGAAGCTTTCGCAGCACAGGAAGGCTCTCCCGATCGCTTCTGTTGAGAAGCGTCTGGTAGAGGAAGTTAGAAAGCATGATACTTTGATTATTGTTGGCGAAACTGGAAGCGGAAAAACAACACAATTACCTCAGTTTTTGTACAATGCTGGATTTTGTGGGTATGGCAAAGTCATTGGGGTAACTCAACCTAGGCGTGTGGCTGCTATGACCGTGGCGAAACGCGTTGCTGAGGAATGCGGTGTTACTTTGGGTGAAAAGGTTGGTTACGCTGTCAGATTTGAGGATGTGACCTCTAGTTCAACAAGGATCAAGTATATGACTGATGGATTGCTACTGAGGGAAGCACTATTGGATCCATATCTCTCTAAGTATTCAGTCGTCATTGTCGATGAAGCTCATGAGAGAACTGTCCAGACTGATGTCTTACTGGGCTTGCTTAAAAATGTACAAAATGCAAGGTCAAAAGTTGTCAATAACCACCAAGATACAAAAAACACAAAGACAAATAATGACATGCAGTTGGATAAAGAAAATGGTTCTCAGTCCTTGAGTTTTCTCAAGCAATGCCAAGGAAGGAATCCATTGAAGTTAATTATCATGTCTGCCAGTTTGGATGCACGAATTTTCTCCGAGTACTTCGGTGGTGCAAGAGCTGTTCACATCCAGGGTCGACAGTTTCCTGTCGATATATATTATACTCATCACAATGTACAAGATTATCTAGATGCATCGTTAACTGCCATATTTCAGATTCATATGGAGGAGGACCCTGGTGATATACTTGTATTTTTGACTGGTCAAGAAGAAATTGAATCTGTACAGAGACTTGTCAAAGAAAGACTTAAACAGTTACCTGAAACCAGTCAAAAACTCGTAGCTGTTCCTATATTCTCATCTCTTCCATCAGAACAGCAAATGCAAGTGTTTGCACCGGCTCCTGATGGATTTCGTAAGGTAATATTGGCAACGAATATTGCTGAGACATCTGTAACAATACCTGGAATCAAGTATGTAATAGATCCTGGGTTTGTAAAAGCACGTACCTATGATCCGAATAAAGGGTTATCAAGTTTGAATGTTATTCCAATTTCAAAAGCACAGGCTCTTCAGAGAAGTGGGCGTGCAGGGAGAGAAAGATCAGGGAAGTGCTTCCGCCTCTACCCAGAGAATCAATTTGAGAAACTTGAGGATTCAACAAAGCCAGAGATCAAGCGGTGTGACCTCTCTAGTATAATTTTGCAACTTAAGGTTCTGGGTGTTGATGATGTCATTGGGTTCGACTTCATAGATAAACCTTCAAGGTCGGCTATTGTCAAATCACTGGAGCAATTGTATGTGCTAGGTGCTTTAACAGATGAGTGTAAACTATCAGATCCAGTTGGACGTCAAATGGCAAGCCTTCCCCTAGACCCTATTTTCTCAAAAGCTCTAATCCGAGCAAGTGAAACTGAATTCAATTGCCTCGAAGAGATGTTGATAACTGTTGCAATGCTCTCAGTTGAGTCCATATTTTTCGCTCCCCGTGAGAAATTGAATGAGGCTAGAACTGCAATGAAATGCTTTGCAAGTCCAGATGGGGACCACCTCACTTTGGTTAATGTATATCGAGCGTTTAATGAGTTTTCAGAGAAGAGATCAGATCTCAGTAAAGAGAAACATGAAAAAAGTCTCAGGAAATGGTGCAAGGACAATTTCATTAATAGTCGCTCCCTGAAGCATGCTCGTGACATTCACAGCCAAATCCGAGGGAATGTTGAACAAATGGGTCTTCATGTAGCTTCTTGCGGGGATGACATGCTTCCGTTTCGAAGATGTCTTGCAGCGTCTTTCTTCCTCAATGCAGCTTTAAAACAGCCCGAGGGAACTTACAGGGCTTTAGCAAATGGTCAGGTGGTTCGGATTCATCCGTCGTCCGTGTTGTTCCATGAGAAACCAGAGTGTATAGTTTTTAATGAACTAGTCGAAACTAATCATAAATACATCCGCAACACAACTAGAATCGATTATTTATGGTTACATGAGCTTGCTCCTCATTTCTATGCCATGCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

715

Amino Acids

80.53

Weight (kDa)

8.82

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	47 - 171	8.5e-06	DEAD/DEAH box helicase
Helicase_C	PF00271	279 - 408	3.5e-12	Helicase conserved C-terminal domain
WHD_HA2	PF04408	471 - 500	2.1e-07	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	501 - 562	7.8e-12	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	634 - 709	4.6e-22	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1480
AccI	GTMKAC	1 cut(s)	763
AccII	CGCG	1 cut(s)	315
AciI	CCGC	7 cut(s)	33, 201, 330, 1246, 1306, 1878, 2077
AclWI	GGATC	6 cut(s)	407, 440, 453, 1106, 1136, 1460
AcsI	RAATTY	2 cut(s)	714, 1544
AcuI	CTGAAG	2 cut(s)	1184, 1826
AcyI	GRCGYC	2 cut(s)	75, 1477
AfaI	GTAC	6 cut(s)	233, 540, 728, 804, 912, 1135
AfiI	CCNNNNNNNGG	2 cut(s)	1151, 1684
AflII	CTTAAG	1 cut(s)	1337
AflIII	ACRYGT	1 cut(s)	313
AhlI	ACTAGT	1 cut(s)	2050
AjnI	CCWGG	4 cut(s)	756, 862, 1090, 1114
AluBI	AGCT	9 cut(s)	48, 97, 488, 746, 971, 1520, 1871, 1937, 2116
AluI	AGCT	9 cut(s)	48, 97, 488, 746, 971, 1520, 1871, 1937, 2116
Alw26I	GTCTC	3 cut(s)	910, 1067, 1766
AlwI	GGATC	6 cut(s)	407, 440, 453, 1106, 1136, 1460
Ama87I	CYCGRG	1 cut(s)	1949
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	5 cut(s)	45, 103, 293, 1913, 1934
ApoI	RAATTY	2 cut(s)	714, 1544
AseI	ATTAAT	1 cut(s)	1791
Asp700I	GAANNNNTTC	1 cut(s)	1241
AspA2I	CCTAGG	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	859, 1672
AsuHPI	GGTGA	2 cut(s)	356, 878
AsuII	TTCGAA	1 cut(s)	1900
AvaI	CYCGRG	1 cut(s)	1949
AvaII	GGWCC	2 cut(s)	859, 1672
AvrII	CCTAGG	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	1815
BbsI	GAAGAC	1 cut(s)	1853
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	57, 115, 280, 1925, 1946
BccI	CCATC	4 cut(s)	410, 1003, 1028, 1661
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	4 cut(s)	758, 864, 1092, 1116
BcoDI	GTCTC	3 cut(s)	910, 1067, 1766
BcuI	ACTAGT	1 cut(s)	2050
BfaI	CTAG	9 cut(s)	282, 387, 815, 1320, 1433, 1499, 1635, 2051, 2088
BfrI	CTTAAG	1 cut(s)	1337
BglII	AGATCT	1 cut(s)	1732
BisI	GCNGC	6 cut(s)	34, 46, 104, 294, 1914, 1935
BlnI	CCTAGG	1 cut(s)	281
BlsI	GCNGC	6 cut(s)	35, 47, 105, 295, 1915, 1936
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	4 cut(s)	758, 864, 1092, 1116
Bme18I	GGWCC	2 cut(s)	859, 1672
BmeT110I	CYCGRG	1 cut(s)	1949
BmgT120I	GGNCC	2 cut(s)	859, 1672
BmiI	GGNNCC	4 cut(s)	447, 861, 1029, 1673
BmrFI	CCNGG	4 cut(s)	758, 864, 1092, 1116
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	3 cut(s)	697, 808, 830
BmuI	ACTGGG	1 cut(s)	530
BoxI	GACNNNNGTC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	1853
BpmI	CTGGAG	1 cut(s)	1436
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	1900
BpuEI	CTTGAG	3 cut(s)	635, 661, 1298
Bsa29I	ATCGAT	1 cut(s)	2094
BsaAI	YACGTR	1 cut(s)	1133
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	2 cut(s)	75, 1477
BsaJI	CCNNGG	8 cut(s)	281, 303, 661, 757, 862, 1115, 1837, 1950
BsaXI	ACNNNNNCTCC	2 cut(s)	1409, 1439
Bsc4I	CCNNNNNNNGG	2 cut(s)	1151, 1684
Bse118I	RCCGGY	1 cut(s)	1024
Bse1I	ACTGG	7 cut(s)	199, 525, 699, 892, 954, 1419, 1469
Bse3DI	GCAATG	3 cut(s)	662, 1587, 1650
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	4 cut(s)	758, 864, 1092, 1116
BseCI	ATCGAT	1 cut(s)	2094
BseDI	CCNNGG	8 cut(s)	281, 303, 661, 757, 862, 1115, 1837, 1950
BseGI	GGATG	6 cut(s)	382, 712, 753, 1888, 1996, 2073
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	1151, 1684
BseMI	GCAATG	3 cut(s)	662, 1587, 1650
BseMII	CTCAG	8 cut(s)	236, 312, 419, 647, 1062, 1602, 1750, 1777
BseNI	ACTGG	7 cut(s)	199, 525, 699, 892, 954, 1419, 1469
BseRI	GAGGAG	2 cut(s)	869, 2112
BseXI	GCAGC	5 cut(s)	57, 115, 280, 1925, 1946
BsgI	GTGCAG	1 cut(s)	1236
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	2094
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	1949
BsiSI	CCGG	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	1685
BslI	CCNNNNNNNGG	2 cut(s)	1151, 1684
BsmAI	GTCTC	3 cut(s)	910, 1067, 1766
BsmFI	GGGAC	1 cut(s)	1685
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	1949
Bsp119I	TTCGAA	1 cut(s)	1900
Bsp1407I	TGTACA	4 cut(s)	231, 538, 802, 910
BspACI	CCGC	7 cut(s)	33, 201, 330, 1246, 1306, 1878, 2077
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	8 cut(s)	235, 313, 420, 646, 1063, 1601, 1749, 1776
BspDI	ATCGAT	1 cut(s)	2094
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	4 cut(s)	447, 861, 1029, 1673
BspPI	GGATC	6 cut(s)	407, 440, 453, 1106, 1136, 1460
BspQI	GCTCTTC	1 cut(s)	1203
BspT104I	TTCGAA	1 cut(s)	1900
BspTI	CTTAAG	1 cut(s)	1337
BsrDI	GCAATG	3 cut(s)	662, 1587, 1650
BsrFI	RCCGGY	1 cut(s)	1024
BsrGI	TGTACA	4 cut(s)	231, 538, 802, 910
BsrI	ACTGG	7 cut(s)	199, 525, 699, 892, 954, 1419, 1469
BssAI	RCCGGY	1 cut(s)	1024
BssECI	CCNNGG	8 cut(s)	281, 303, 661, 757, 862, 1115, 1837, 1950
BssNI	GRCGYC	2 cut(s)	75, 1477
BssSI	CACGAG	1 cut(s)	1815
BssT1I	CCWWGG	2 cut(s)	281, 661
Bst2BI	CACGAG	1 cut(s)	1815
Bst2UI	CCWGG	4 cut(s)	758, 864, 1092, 1116
Bst4CI	ACNGT	5 cut(s)	304, 502, 768, 942, 1576
Bst6I	CTCTTC	4 cut(s)	996, 1203, 1554, 1718
BstACI	GRCGYC	2 cut(s)	75, 1477
BstAFI	CTTAAG	1 cut(s)	1337
BstAUI	TGTACA	4 cut(s)	231, 538, 802, 910
BstBAI	YACGTR	1 cut(s)	1133
BstBI	TTCGAA	1 cut(s)	1900
BstC8I	GCNNGC	5 cut(s)	527, 1215, 1489, 1812, 2118
BstDEI	CTNAG	9 cut(s)	222, 321, 428, 459, 633, 1071, 1588, 1736, 1763
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	6 cut(s)	382, 712, 753, 1888, 1996, 2073
BstFNI	CGCG	1 cut(s)	315
BstMAI	GTCTC	3 cut(s)	910, 1067, 1766
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 103, 1640
BstNI	CCWGG	4 cut(s)	758, 864, 1092, 1116
BstNSI	RCATGY	3 cut(s)	610, 1814, 1891
BstPAI	GACNNNNGTC	1 cut(s)	512
BstSCI	CCNGG	4 cut(s)	756, 862, 1090, 1114
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	5 cut(s)	57, 115, 280, 1925, 1946
BstV2I	GAAGAC	1 cut(s)	1853
BstX2I	RGATCY	4 cut(s)	445, 1111, 1465, 1732
BstYI	RGATCY	4 cut(s)	445, 1111, 1465, 1732
Bsu15I	ATCGAT	1 cut(s)	2094
BsuRI	GGCC	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	2094
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	382, 712, 753, 1888, 1996, 2073
BtsIMutI	CAGTG	1 cut(s)	1412
Cac8I	GCNNGC	5 cut(s)	527, 1215, 1489, 1812, 2118
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	1024
Cfr13I	GGNCC	2 cut(s)	859, 1672
ClaI	ATCGAT	1 cut(s)	2094
CseI	GACGC	3 cut(s)	83, 131, 1905
Csp6I	GTAC	6 cut(s)	232, 539, 727, 803, 911, 1134
CviQI	GTAC	6 cut(s)	232, 539, 727, 803, 911, 1134
DdeI	CTNAG	9 cut(s)	222, 321, 428, 459, 633, 1071, 1588, 1736, 1763
DraI	TTTAAA	1 cut(s)	1941
Eam1104I	CTCTTC	4 cut(s)	996, 1203, 1554, 1718
EarI	CTCTTC	4 cut(s)	996, 1203, 1554, 1718
EciI	GGCGGA	1 cut(s)	1235
Eco130I	CCWWGG	2 cut(s)	281, 661
Eco47I	GGWCC	2 cut(s)	859, 1672
Eco57I	CTGAAG	2 cut(s)	1184, 1826
Eco88I	CYCGRG	1 cut(s)	1949
EcoO109I	RGGNCCY	1 cut(s)	859
EcoRI	GAATTC	1 cut(s)	1544
EcoRII	CCWGG	4 cut(s)	756, 862, 1090, 1114
EcoT14I	CCWWGG	2 cut(s)	281, 661
EcoT22I	ATGCAT	1 cut(s)	823
ErhI	CCWWGG	2 cut(s)	281, 661
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FaqI	GGGAC	1 cut(s)	1685
FauI	CCCGC	1 cut(s)	1871
FauNDI	CATATG	1 cut(s)	849
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	6 cut(s)	34, 46, 104, 294, 1914, 1935
FokI	GGATG	6 cut(s)	389, 719, 740, 1895, 1983, 2060
Fsp4HI	GCNGC	6 cut(s)	34, 46, 104, 294, 1914, 1935
FspBI	CTAG	9 cut(s)	282, 387, 815, 1320, 1433, 1499, 1635, 2051, 2088
GluI	GCNGC	6 cut(s)	34, 46, 104, 294, 1914, 1935
GsuI	CTGGAG	1 cut(s)	1436
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	1025
HgaI	GACGC	3 cut(s)	83, 131, 1905
Hin1I	GRCGYC	2 cut(s)	75, 1477
HincII	GTYRAC	2 cut(s)	764, 828
HindII	GTYRAC	2 cut(s)	764, 828
HindIII	AAGCTT	1 cut(s)	95
HpaI	GTTAAC	1 cut(s)	828
HpaII	CCGG	1 cut(s)	1025
HphI	GGTGA	2 cut(s)	356, 878
Hpy166II	GTNNAC	5 cut(s)	68, 751, 764, 828, 1457
Hpy188III	TCNNGA	9 cut(s)	121, 491, 505, 815, 893, 1031, 1664, 1765, 1817
Hpy8I	GTNNAC	5 cut(s)	68, 751, 764, 828, 1457
Hpy99I	CGWCG	3 cut(s)	59, 77, 2005
HpyAV	CCTTC	4 cut(s)	106, 660, 1398, 1502
HpyCH4III	ACNGT	5 cut(s)	304, 502, 768, 942, 1576
HpyCH4IV	ACGT	2 cut(s)	1132, 1477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 103, 1640
HpyF3I	CTNAG	9 cut(s)	222, 321, 428, 459, 633, 1071, 1588, 1736, 1763
HpySE526I	ACGT	2 cut(s)	1132, 1477
Hsp92I	GRCGYC	2 cut(s)	75, 1477
KspAI	GTTAAC	1 cut(s)	828
LguI	GCTCTTC	1 cut(s)	1203
LmnI	GCTCC	5 cut(s)	1033, 1417, 1615, 1805, 2125
Lsp1109I	GCAGC	5 cut(s)	57, 115, 280, 1925, 1946
LweI	GCATC	3 cut(s)	697, 808, 830
MaeI	CTAG	9 cut(s)	282, 387, 815, 1320, 1433, 1499, 1635, 2051, 2088
MaeII	ACGT	2 cut(s)	1132, 1477
MaeIII	GTNAC	9 cut(s)	271, 334, 356, 379, 942, 1081, 1310, 1817, 2106
MboII	GAAGA	8 cut(s)	908, 983, 1190, 1571, 1735, 1853, 1914, 1915
MfeI	CAATTG	2 cut(s)	1421, 1549
MflI	RGATCY	4 cut(s)	445, 1111, 1465, 1732
MluI	ACGCGT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	1604
MmeI	TCCRAC	3 cut(s)	78, 594, 1453
Mph1103I	ATGCAT	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	1241
MslI	CAYNNNNRTG	3 cut(s)	798, 1815, 2130
MspA1I	CMGCKG	1 cut(s)	33
MspCI	CTTAAG	1 cut(s)	1337
MspI	CCGG	1 cut(s)	1025
MspR9I	CCNGG	4 cut(s)	758, 864, 1092, 1116
MunI	CAATTG	2 cut(s)	1421, 1549
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	4 cut(s)	758, 864, 1092, 1116
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	42, 103, 1640
NdeI	CATATG	1 cut(s)	849
NlaIV	GGNNCC	4 cut(s)	447, 861, 1029, 1673
NmuCI	GTSAC	3 cut(s)	379, 1310, 1817
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	3 cut(s)	610, 1814, 1891
NspV	TTCGAA	1 cut(s)	1900
PaeI	GCATGC	1 cut(s)	1814
PagI	TCATGA	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	1241
PfeI	GAWTC	9 cut(s)	61, 670, 844, 905, 1095, 1261, 1283, 1993, 2091
PkrI	GCNGC	6 cut(s)	35, 47, 105, 295, 1915, 1936
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	1 cut(s)	1603
PpsI	GAGTC	1 cut(s)	1603
Ppu21I	YACGTR	1 cut(s)	1133
PpuMI	RGGWCCY	1 cut(s)	859
PshAI	GACNNNNGTC	1 cut(s)	512
PshBI	ATTAAT	1 cut(s)	1791
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	4 cut(s)	756, 862, 1090, 1114
PspGI	CCWGG	4 cut(s)	756, 862, 1090, 1114
PspN4I	GGNNCC	4 cut(s)	447, 861, 1029, 1673
PspPI	GGNCC	2 cut(s)	859, 1672
PspPPI	RGGWCCY	1 cut(s)	859
PsuI	RGATCY	4 cut(s)	445, 1111, 1465, 1732
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	6 cut(s)	233, 540, 728, 804, 912, 1135
RsaNI	GTAC	6 cut(s)	232, 539, 727, 803, 911, 1134
RseI	CAYNNNNRTG	3 cut(s)	798, 1815, 2130
SalI	GTCGAC	1 cut(s)	762
SapI	GCTCTTC	1 cut(s)	1203
SatI	GCNGC	6 cut(s)	34, 46, 104, 294, 1914, 1935
Sau96I	GGNCC	2 cut(s)	859, 1672
ScaI	AGTACT	1 cut(s)	728
SchI	GAGTC	1 cut(s)	1604
ScrFI	CCNGG	4 cut(s)	758, 864, 1092, 1116
SfaNI	GCATC	3 cut(s)	697, 808, 830
SfuI	TTCGAA	1 cut(s)	1900
SinI	GGWCC	2 cut(s)	859, 1672
SmiMI	CAYNNNNRTG	3 cut(s)	798, 1815, 2130
SmlI	CTYRAG	4 cut(s)	640, 650, 1277, 1337
SmoI	CTYRAG	4 cut(s)	640, 650, 1277, 1337
SpeI	ACTAGT	1 cut(s)	2050
SphI	GCATGC	1 cut(s)	1814
SsiI	CCGC	7 cut(s)	33, 201, 330, 1246, 1306, 1878, 2077
SspI	AATATT	2 cut(s)	1053, 1066
SspMI	CTAG	9 cut(s)	282, 387, 815, 1320, 1433, 1499, 1635, 2051, 2088
StyD4I	CCNGG	4 cut(s)	756, 862, 1090, 1114
StyI	CCWWGG	2 cut(s)	281, 661
TaaI	ACNGT	5 cut(s)	304, 502, 768, 942, 1576
TaiI	ACGT	2 cut(s)	1135, 1480
TaqI	TCGA	9 cut(s)	480, 763, 777, 1371, 1557, 1699, 1900, 2055, 2094
TatI	WGTACW	5 cut(s)	231, 538, 726, 802, 910
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	9 cut(s)	61, 670, 844, 905, 1095, 1261, 1283, 1993, 2091
TscAI	CASTG	1 cut(s)	1419
TseFI	GTSAC	3 cut(s)	379, 1310, 1817
TseI	GCWGC	5 cut(s)	45, 103, 293, 1913, 1934
Tsp45I	GTSAC	3 cut(s)	379, 1310, 1817
TspDTI	ATGAA	9 cut(s)	498, 836, 1366, 1661, 1767, 1777, 1853, 1985, 2061
TspGWI	ACGGA	4 cut(s)	24, 1884, 1989, 1996
TspRI	CASTG	1 cut(s)	1419
Vha464I	CTTAAG	1 cut(s)	1337
VpaK11BI	GGWCC	2 cut(s)	859, 1672
VspI	ATTAAT	1 cut(s)	1791
XapI	RAATTY	2 cut(s)	714, 1544
XbaI	TCTAGA	1 cut(s)	814
XceI	RCATGY	3 cut(s)	610, 1814, 1891
XmaJI	CCTAGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	1241
XspI	CTAG	9 cut(s)	282, 387, 815, 1320, 1433, 1499, 1635, 2051, 2088
ZraI	GACGTC	1 cut(s)	1478
ZrmI	AGTACT	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.