Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Forward (+)

21130217 .. 21133502

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGAAATGCTAACGGCAGAGAAGAGGAGGAGGAGGAACAGGAGATCCAAGATGAGACATCTGACGCCGTCGTCGTCAATGGCCAACTTGATATTGCCATCTTCTCTCCCCAGGTTCCTGTAGCTCCGCTTCAAGGGGGTGACGGCATACTCGTATTTCCTCAAATGTGGACGAGTGAATTTCAAGATGTTGATCACCCTCCTGAACAAGGGATACCCACCATGATTACATGGATGTATGGTGGGAACAACTTGGCTGTGGAGGGTTCTTGGGACAATTGGAAATCTAGGAAAGCACTACAGAGATCTGGTAAGGATCATTCAGTTCTTTTGGTCTTGCCATCTGGCATATACCGGTACAAGTTCATTGTTGATGGTGAACCAAGATATATCCCTGATCTTCCATTCATAGCTGATGAAATGGGCCATGTTTGTAATCTTCTCGATGTTCATGACTATGTGCCAGAAAACTTGGAGAGTGTGGCTGAGTTCGAGGCTCCGGCCTCCCCAGAATCCAGCTATGATCAAGCATTTCCAGCTGAGGAAGATCTTTCAAAGGAACCAGTGCTTATTCCGCCACAGCTGCAACTAACTGTCCTTGGCATGGAGGATTCAAATGTAGATTCTCCAAAACCTCGACATGTTGTACTGAACCACCTTTTTATAGAAAAAGGATGGGCTTCGCAATCAATGGTTTCCCTGGGTCTAACTCACAGGTTTGAGTCTAAATATGTGACTGTTGTCCTATATAAATCACTTAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

256

Amino Acids

28.58

Weight (kDa)

4.48

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	72 - 152	1.1e-29	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	186 - 252	3.2e-21	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AciI	CCGC	2 cut(s)	128, 575
AclWI	GGATC	2 cut(s)	40, 324
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	359, 648
AfiI	CCNNNNNNNGG	3 cut(s)	134, 209, 604
AflIII	ACRYGT	1 cut(s)	640
AgeI	ACCGGT	1 cut(s)	354
AgsI	TTSAA	4 cut(s)	134, 185, 555, 615
AjnI	CCWGG	2 cut(s)	111, 699
AloI	GAACNNNNNNTCC	2 cut(s)	30, 62
AluBI	AGCT	5 cut(s)	125, 413, 519, 539, 583
AluI	AGCT	5 cut(s)	125, 413, 519, 539, 583
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	2 cut(s)	40, 324
AoxI	GGCC	3 cut(s)	82, 424, 501
ApeKI	GCWGC	1 cut(s)	583
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	152, 188, 389
BalI	TGGCCA	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	4 cut(s)	107, 349, 368, 669
BceAI	ACGGC	3 cut(s)	31, 53, 160
BciT130I	CCWGG	2 cut(s)	113, 701
BciVI	GTATCC	1 cut(s)	207
BclI	TGATCA	2 cut(s)	193, 523
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	120, 299
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	2 cut(s)	305, 547
BisI	GCNGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	585
Bme1390I	CCNGG	2 cut(s)	113, 701
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	3 cut(s)	117, 498, 561
BmrFI	CCNGG	2 cut(s)	113, 701
BoxI	GACNNNNGTC	1 cut(s)	740
Bpu10I	CCTNAGC	1 cut(s)	540
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	111, 598, 699, 700
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 209, 604
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	563
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	113, 701
BseDI	CCNNGG	4 cut(s)	111, 598, 699, 700
BseGI	GGATG	2 cut(s)	240, 680
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	3 cut(s)	134, 209, 604
BseMII	CTCAG	2 cut(s)	477, 531
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	3 cut(s)	41, 44, 47
BseXI	GCAGC	1 cut(s)	570
BshFI	GGCC	3 cut(s)	84, 426, 503
BshTI	ACCGGT	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	355, 500
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	134, 209, 604
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	84, 426, 503
Bsp143I	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
BspACI	CCGC	2 cut(s)	128, 575
BspANI	GGCC	3 cut(s)	84, 426, 503
BspCNI	CTCAG	2 cut(s)	478, 532
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	117, 498, 561
BspPI	GGATC	2 cut(s)	40, 324
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	4 cut(s)	111, 598, 699, 700
BssMI	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	2 cut(s)	113, 701
Bst4CI	ACNGT	2 cut(s)	595, 739
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	486, 540
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	240, 680
BstKTI	GATC	7 cut(s)	48, 196, 308, 319, 400, 526, 550
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 574, 583
BstNI	CCWGG	2 cut(s)	113, 701
BstNSI	RCATGY	1 cut(s)	644
BstPAI	GACNNNNGTC	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	111, 699
BstSFI	CTRYAG	2 cut(s)	120, 299
BstV1I	GCAGC	1 cut(s)	570
BstX2I	RGATCY	3 cut(s)	45, 305, 547
BstYI	RGATCY	3 cut(s)	45, 305, 547
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	84, 426, 503
BtsCI	GGATG	2 cut(s)	240, 680
BtsIMutI	CAGTG	1 cut(s)	570
CciI	TCATGA	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	358, 647
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	6 cut(s)	223, 231, 428, 452, 604, 641
CviQI	GTAC	2 cut(s)	358, 647
DdeI	CTNAG	2 cut(s)	486, 540
DpnI	GATC	7 cut(s)	47, 195, 307, 318, 399, 525, 549
DpnII	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	111, 699
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	6 cut(s)	226, 234, 431, 455, 607, 644
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	6 cut(s)	222, 230, 427, 451, 603, 640
FbaI	TGATCA	2 cut(s)	193, 523
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	2 cut(s)	247, 687
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	1 cut(s)	584
HaeIII	GGCC	3 cut(s)	84, 426, 503
HapII	CCGG	2 cut(s)	355, 500
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	226, 234, 431, 455, 607, 644
HinfI	GANTC	4 cut(s)	512, 611, 623, 722
HpaII	CCGG	2 cut(s)	355, 500
HphI	GGTGA	3 cut(s)	152, 188, 389
Hpy166II	GTNNAC	2 cut(s)	171, 380
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	185, 203, 443, 452
Hpy8I	GTNNAC	2 cut(s)	171, 380
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyCH4III	ACNGT	2 cut(s)	595, 739
HpyCH4V	TGCA	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 574, 583
HpyF3I	CTNAG	2 cut(s)	486, 540
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	226, 234, 431, 455, 607, 644
Ksp22I	TGATCA	2 cut(s)	193, 523
Kzo9I	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
LmnI	GCTCC	2 cut(s)	130, 502
Lsp1109I	GCAGC	1 cut(s)	570
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	140, 733
MalI	GATC	7 cut(s)	47, 195, 307, 318, 399, 525, 549
MboI	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
MboII	GAAGA	5 cut(s)	35, 94, 392, 431, 557
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	3 cut(s)	45, 305, 547
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	2 cut(s)	179, 277
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	731
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	2 cut(s)	539, 583
MspI	CCGG	2 cut(s)	355, 500
MspR9I	CCNGG	2 cut(s)	113, 701
MunI	CAATTG	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	113, 701
MwoI	GCNNNNNNNGC	3 cut(s)	536, 574, 583
NdeII	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
NlaIII	CATG	6 cut(s)	226, 234, 431, 455, 607, 644
NlaIV	GGNNCC	3 cut(s)	117, 498, 561
NmuCI	GTSAC	2 cut(s)	140, 733
NspI	RCATGY	1 cut(s)	644
PagI	TCATGA	1 cut(s)	451
PasI	CCCWGGG	1 cut(s)	700
PciI	ACATGT	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 150
PfeI	GAWTC	3 cut(s)	512, 611, 623
PflFI	GACNNNGTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	585
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PscI	ACATGT	1 cut(s)	640
PshAI	GACNNNNGTC	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	111, 699
PspGI	CCWGG	2 cut(s)	111, 699
PspN4I	GGNNCC	3 cut(s)	117, 498, 561
PspPI	GGNCC	1 cut(s)	424
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PsuI	RGATCY	3 cut(s)	45, 305, 547
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	2 cut(s)	539, 583
RsaI	GTAC	2 cut(s)	359, 648
RsaNI	GTAC	2 cut(s)	358, 647
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	7 cut(s)	45, 193, 305, 316, 397, 523, 547
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	113, 701
SfcI	CTRYAG	2 cut(s)	120, 299
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	2 cut(s)	179, 277
SsiI	CCGC	2 cut(s)	128, 575
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	111, 699
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	595, 739
TaqI	TCGA	3 cut(s)	444, 492, 637
TasI	AATT	2 cut(s)	179, 277
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	3 cut(s)	512, 611, 623
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	2 cut(s)	140, 733
TseI	GCWGC	1 cut(s)	583
Tsp45I	GTSAC	2 cut(s)	140, 733
TspDTI	ATGAA	4 cut(s)	355, 397, 432, 440
TspRI	CASTG	1 cut(s)	570
Tth111I	GACNNNGTC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	644
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.