Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Reverse (-)

29059176 .. 29061321

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGGGCAGAGGAAGTTTGCATTCCTATTTCAAAGTTGAAGGGTGGGCAACATCTCTGGCTGCTGGTGTTGGGGCTGACGGGATGCATCATTCTTTGGCTTATATCTTTCGCATGGACATTCGTCTCACTGACTCTTGATTGGATAAGGGAGTTTCTCAAGGTTGTTCTGGTTTGGTTAGAACCAGTCATCTTGCAAACTGTCATGCAGCTTGCGAAGTGTAGTGCAACTCAACAAAATGAGGAGTTCAGAGACAGTCAAAGCCGATGCAGGATGGATATTGACAATTGTGTATTTTGGATTTGCGAATGGTCATTAATACCCAATTTTGTTGTAGTGACGTTGGCGCCATGCTCATATCCTCTTGAGTTGGCGTCATGTCCTCTAGTTTTTAGGGACATCAATCCTTGCAGGCACGTTTGCAGCAGCGATATCAGAAAACGCATCAGGCATCGATTCTGCTACGTTCTGAAGATCGAGAATTCTCCGCACTTCAATTTCGGACTGTGCGGTTCGGGGATCAAGATGAGACAGAGTGGGGACAGACCACGACAATTCCTGTCGTTCCTGTTGAACATTGATGTTCTTATCTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

199

Amino Acids

23.01

Weight (kDa)

8.48

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AciI	CCGC	2 cut(s)	488, 510
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	2 cut(s)	347, 374
AgsI	TTSAA	4 cut(s)	33, 40, 496, 574
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	3 cut(s)	130, 246, 523
AlwI	GGATC	1 cut(s)	527
ApeKI	GCWGC	4 cut(s)	61, 208, 423, 426
ApoI	RAATTY	1 cut(s)	481
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	48, 220, 435, 438
BccI	CCATC	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	130, 246, 523
BfaI	CTAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	4 cut(s)	62, 209, 424, 427
BlsI	GCNGC	4 cut(s)	63, 210, 425, 428
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	5 cut(s)	74, 96, 257, 453, 460
BoxI	GACNNNNGTC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	143, 386
Bsa29I	ATCGAT	1 cut(s)	454
BsaHI	GRCGYC	2 cut(s)	347, 374
Bse1I	ACTGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	454
BseGI	GGATG	2 cut(s)	89, 279
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	257, 583
BseXI	GCAGC	4 cut(s)	48, 220, 435, 438
BshNI	GGYRCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	454
BslFI	GGGAC	2 cut(s)	410, 554
BsmAI	GTCTC	3 cut(s)	130, 246, 523
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	410, 554
BsmI	GAATGC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	474, 519
BspACI	CCGC	2 cut(s)	488, 510
BspDI	ATCGAT	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	474, 519
BssNI	GRCGYC	2 cut(s)	347, 374
Bst4CI	ACNGT	3 cut(s)	202, 257, 507
BstACI	GRCGYC	2 cut(s)	347, 374
BstC8I	GCNNGC	2 cut(s)	213, 413
BstF5I	GGATG	2 cut(s)	89, 279
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	477, 522
BstMAI	GTCTC	3 cut(s)	130, 246, 523
BstMBI	GATC	2 cut(s)	474, 519
BstPAI	GACNNNNGTC	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	48, 220, 435, 438
Bsu15I	ATCGAT	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	89, 279
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	213, 413
CfoI	GCGC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	454
CseI	GACGC	1 cut(s)	363
CviAII	CATG	4 cut(s)	114, 205, 351, 378
CviJI	RGCY	5 cut(s)	61, 76, 100, 211, 264
CviKI_1	RGCY	5 cut(s)	61, 76, 100, 211, 264
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	2 cut(s)	476, 521
DpnII	GATC	2 cut(s)	474, 519
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	4 cut(s)	117, 208, 354, 381
FaiI	YATR	6 cut(s)	104, 115, 206, 352, 358, 379
FaqI	GGGAC	2 cut(s)	410, 554
FatI	CATG	4 cut(s)	113, 204, 350, 377
Fnu4HI	GCNGC	4 cut(s)	62, 209, 424, 427
FokI	GGATG	2 cut(s)	96, 286
Fsp4HI	GCNGC	4 cut(s)	62, 209, 424, 427
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	62, 209, 424, 427
HaeII	RGCGCY	1 cut(s)	350
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	2 cut(s)	347, 374
Hin1II	CATG	4 cut(s)	117, 208, 354, 381
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	2 cut(s)	133, 456
Hpy188I	TCNGA	4 cut(s)	251, 437, 471, 503
Hpy188III	TCNNGA	4 cut(s)	137, 365, 478, 523
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	3 cut(s)	202, 257, 507
HpyCH4IV	ACGT	3 cut(s)	341, 417, 465
HpyCH4V	TGCA	8 cut(s)	21, 87, 196, 208, 227, 270, 411, 423
HpySE526I	ACGT	3 cut(s)	341, 417, 465
Hsp92I	GRCGYC	2 cut(s)	347, 374
Hsp92II	CATG	4 cut(s)	117, 208, 354, 381
HspAI	GCGC	1 cut(s)	347
KasI	GGCGCC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	474, 519
LpnPI	CCDG	9 cut(s)	43, 50, 155, 198, 256, 397, 433, 572, 581
Lsp1109I	GCAGC	4 cut(s)	48, 220, 435, 438
LweI	GCATC	5 cut(s)	74, 96, 257, 453, 460
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	3 cut(s)	341, 417, 465
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	476, 521
MboI	GATC	2 cut(s)	474, 519
MboII	GAAGA	1 cut(s)	484
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	5 cut(s)	286, 325, 481, 496, 554
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	4, 235, 372, 393
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	1 cut(s)	317
MunI	CAATTG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	347
NdeII	GATC	2 cut(s)	474, 519
NlaIII	CATG	4 cut(s)	117, 208, 354, 381
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	89
PctI	GAATGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	4 cut(s)	63, 210, 425, 428
PleI	GAGTC	1 cut(s)	127
PluTI	GGCGCC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	4 cut(s)	62, 209, 424, 427
Sau3AI	GATC	2 cut(s)	474, 519
SchI	GAGTC	1 cut(s)	127
SetI	ASST	5 cut(s)	165, 213, 344, 420, 468
SfaNI	GCATC	5 cut(s)	74, 96, 257, 453, 460
SfoI	GGCGCC	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	158, 365
SmoI	CTYRAG	2 cut(s)	158, 365
Sse9I	AATT	5 cut(s)	286, 325, 481, 496, 554
SsiI	CCGC	2 cut(s)	488, 510
SspDI	GGCGCC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	202, 257, 507
TaiI	ACGT	3 cut(s)	344, 420, 468
TaqI	TCGA	2 cut(s)	454, 477
TasI	AATT	5 cut(s)	286, 325, 481, 496, 554
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	61, 208, 423, 426
Tsp45I	GTSAC	1 cut(s)	337
TspRI	CASTG	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	1 cut(s)	481
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.