Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Forward (+)

333637 .. 337434

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGGAATGTGAATGGGAGAGAAGATGGCGGCGGAAGCCCATCGGCGGCGGCGGCAGAGGAAGAGGCCGGTGGCGGGACCTCCCAGGAGGGTCATCACCCCCTTCCGCCTCCACTTGGCGCCGGCGGCGGCCGAGGTGGTGGCGGCGGCGGCGTAGGCGCGGTGGCTGAATTGATGGGTCAGTCACCTCCTCATAGCCCTAGGGCTACTCACTCCCCTTTGATGTTCACTCCCCAAGTCCCCGTTGTTCCGTTACAAAGACCTGATGAGATGCAGATCCCAAACCCGTCATGGATGCAGACTTCAGCGTATGAAGACATCTCCTGTGAGCAAGGAATTCCAACCATGATTACGTGGAGCTATGGTGGGAAGGACGTAGCTGTGGAGGGATCATGGGATGATTGGAAGACAAGGTTGGCCTTACAGAGATCAGGGAAGGACTTCACTATTATGAAAGTACTGCCATCTGGTGTTTACCAGTATAGGTTTGTTGTTGATGGGCAGTGGAGGTGTGCTCCAGACTTGCCTTTGGCCCAAGATGATGCTGGAAATTCTTACAACCTTTTGGACTTGCAGGATTATGTTCCAGAAGACATTGGAAGCATTTCTGGTTTTGAACCTCCCCAGTCTCCCGACTCGAGTTATAGCAACATGCAACTTGGATCTGAAGATTTTGCGAAGGAGCCACCATTGGTACCTCCACATCTGCAGATGACGCTGCTTAATGCCCCAGCATCTTACATGGAGATGCCGCCTCCTTTATCGAGACCTCAACATGTTGTACTTAATCATCTGTACATGCAGAGAGGGAAGAGTGGCCCATCTGTGGTCGCACTTGGCACAACAGAGAGGTTTATAGCAAAGTATGTGACAGTTGTTCTCTACAAGTCTTTGCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

300

Amino Acids

32.2

Weight (kDa)

4.96

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	113 - 192	6.1e-32	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	225 - 297	2.3e-25	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	694
AccB1I	GGYRCC	2 cut(s)	119, 694
AccII	CGCG	1 cut(s)	161
AclWI	GGATC	3 cut(s)	271, 397, 670
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	336, 550
AcuI	CTGAAG	2 cut(s)	288, 687
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	4 cut(s)	459, 696, 783, 797
AfiI	CCNNNNNNNGG	4 cut(s)	46, 75, 116, 826
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	2 cut(s)	360, 380
AluI	AGCT	2 cut(s)	360, 380
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	633, 760
AlwI	GGATC	3 cut(s)	271, 397, 670
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	5 cut(s)	66, 130, 417, 531, 817
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	2 cut(s)	336, 550
Asp700I	GAANNNNTTC	2 cut(s)	440, 604
Asp718I	GGTACC	1 cut(s)	694
AspA2I	CCTAGG	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	122, 161
AspS9I	GGNCC	3 cut(s)	78, 532, 818
AsuHPI	GGTGA	2 cut(s)	89, 177
AvaI	CYCGRG	1 cut(s)	637
AvaII	GGWCC	1 cut(s)	78
AvrII	CCTAGG	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	119, 694
BbsI	GAAGAC	3 cut(s)	321, 413, 597
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	6 cut(s)	20, 49, 169, 472, 491, 829
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	633, 760
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	707
BfoI	RGCGCY	1 cut(s)	123
BlnI	CCTAGG	1 cut(s)	200
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	78, 532, 818
BmiI	GGNNCC	4 cut(s)	79, 121, 684, 696
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	5 cut(s)	261, 285, 532, 738, 743
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	3 cut(s)	321, 413, 597
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	3 cut(s)	84, 133, 200
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 75, 116, 826
Bse118I	RCCGGY	2 cut(s)	68, 122
Bse1I	ACTGG	2 cut(s)	478, 625
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	84, 133, 200
BseGI	GGATG	2 cut(s)	300, 403
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	4 cut(s)	46, 75, 116, 826
BseNI	ACTGG	2 cut(s)	478, 625
BseRI	GAGGAG	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	730
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	5 cut(s)	68, 132, 419, 533, 819
BshNI	GGYRCC	2 cut(s)	119, 694
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	637
BsiSI	CCGG	2 cut(s)	69, 123
BslFI	GGGAC	2 cut(s)	91, 224
BslI	CCNNNNNNNGG	4 cut(s)	46, 75, 116, 826
BsmAI	GTCTC	2 cut(s)	633, 760
BsmFI	GGGAC	2 cut(s)	91, 224
BsnI	GGCC	5 cut(s)	68, 132, 419, 533, 819
Bso31I	GGTCTC	1 cut(s)	760
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	4 cut(s)	276, 389, 428, 662
BspANI	GGCC	5 cut(s)	68, 132, 419, 533, 819
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	4 cut(s)	79, 121, 684, 696
BspMAI	CTGCAG	1 cut(s)	711
BspPI	GGATC	3 cut(s)	271, 397, 670
BspT107I	GGYRCC	2 cut(s)	119, 694
BspTNI	GGTCTC	1 cut(s)	760
BsrFI	RCCGGY	2 cut(s)	68, 122
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	2 cut(s)	478, 625
BssAI	RCCGGY	2 cut(s)	68, 122
BssECI	CCNNGG	3 cut(s)	84, 133, 200
BssMI	GATC	4 cut(s)	276, 389, 428, 662
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	57, 806
BstACI	GRCGYC	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	795
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	300, 403
BstFNI	CGCG	1 cut(s)	161
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 161
BstKTI	GATC	4 cut(s)	279, 392, 431, 665
BstMAI	GTCTC	2 cut(s)	633, 760
BstMBI	GATC	4 cut(s)	276, 389, 428, 662
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 53, 126, 150, 156, 715
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	3 cut(s)	655, 779, 802
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	707
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	3 cut(s)	321, 413, 597
BstX2I	RGATCY	2 cut(s)	276, 662
BstYI	RGATCY	2 cut(s)	276, 662
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	5 cut(s)	68, 132, 419, 533, 819
BtsCI	GGATG	2 cut(s)	300, 403
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	122, 161
Cfr10I	RCCGGY	2 cut(s)	68, 122
Cfr13I	GGNCC	3 cut(s)	78, 532, 818
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	4 cut(s)	458, 695, 782, 796
CviAII	CATG	7 cut(s)	291, 346, 393, 652, 742, 776, 799
CviQI	GTAC	4 cut(s)	458, 695, 782, 796
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	4 cut(s)	278, 391, 430, 664
DpnII	GATC	4 cut(s)	276, 389, 428, 662
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	57, 806
EarI	CTCTTC	2 cut(s)	57, 806
EciI	GGCGGA	2 cut(s)	48, 96
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	288, 687
Eco88I	CYCGRG	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	7 cut(s)	294, 349, 396, 655, 745, 779, 802
FaqI	GGGAC	2 cut(s)	91, 224
FatI	CATG	7 cut(s)	290, 345, 392, 651, 741, 775, 798
FauI	CCCGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	307, 410
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	121, 160
GsaI	CCCAGC	1 cut(s)	734
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	5 cut(s)	68, 132, 419, 533, 819
HapII	CCGG	2 cut(s)	69, 123
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	2 cut(s)	122, 161
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	7 cut(s)	294, 349, 396, 655, 745, 779, 802
Hin6I	GCGC	2 cut(s)	120, 159
HinP1I	GCGC	2 cut(s)	120, 159
HinfI	GANTC	1 cut(s)	635
HpaII	CCGG	2 cut(s)	69, 123
HphI	GGTGA	2 cut(s)	89, 177
Hpy166II	GTNNAC	2 cut(s)	228, 475
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	4 cut(s)	518, 587, 632, 765
Hpy8I	GTNNAC	2 cut(s)	228, 475
HpyAV	CCTTC	4 cut(s)	113, 364, 430, 673
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	2 cut(s)	353, 375
HpyCH4V	TGCA	7 cut(s)	274, 298, 574, 655, 709, 802, 895
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 53, 126, 150, 156, 715
HpySE526I	ACGT	2 cut(s)	353, 375
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	7 cut(s)	294, 349, 396, 655, 745, 779, 802
HspAI	GCGC	2 cut(s)	120, 159
KasI	GGCGCC	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	698
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	276, 389, 428, 662
LmnI	GCTCC	3 cut(s)	357, 520, 682
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	5 cut(s)	261, 285, 532, 738, 743
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	353, 375
MaeIII	GTNAC	3 cut(s)	183, 252, 868
MalI	GATC	4 cut(s)	278, 391, 430, 664
MboI	GATC	4 cut(s)	276, 389, 428, 662
MboII	GAAGA	7 cut(s)	35, 74, 326, 418, 602, 680, 823
MflI	RGATCY	2 cut(s)	276, 662
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	3 cut(s)	170, 336, 550
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	365
MreI	CGCCGGCG	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	122
MroXI	GAANNNNTTC	2 cut(s)	440, 604
MseI	TTAA	2 cut(s)	723, 786
MslI	CAYNNNNRTG	2 cut(s)	449, 746
MspI	CCGG	2 cut(s)	69, 123
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	6 cut(s)	36, 53, 126, 150, 156, 715
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	4 cut(s)	276, 389, 428, 662
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	7 cut(s)	294, 349, 396, 655, 745, 779, 802
NlaIV	GGNNCC	4 cut(s)	79, 121, 684, 696
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	2 cut(s)	183, 868
NspI	RCATGY	3 cut(s)	655, 779, 802
PaeR7I	CTCGAG	1 cut(s)	637
PciI	ACATGT	1 cut(s)	775
PdiI	GCCGGC	1 cut(s)	124
PdmI	GAANNNNTTC	2 cut(s)	440, 604
PleI	GAGTC	1 cut(s)	629
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	629
Ppu21I	YACGTR	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	78
PscI	ACATGT	1 cut(s)	775
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	4 cut(s)	79, 121, 684, 696
PspPI	GGNCC	3 cut(s)	78, 532, 818
PspPPI	RGGWCCY	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	711
PsuI	RGATCY	2 cut(s)	276, 662
RsaI	GTAC	4 cut(s)	459, 696, 783, 797
RsaNI	GTAC	4 cut(s)	458, 695, 782, 796
RseI	CAYNNNNRTG	2 cut(s)	449, 746
SaqAI	TTAA	2 cut(s)	723, 786
Sau3AI	GATC	4 cut(s)	276, 389, 428, 662
Sau96I	GGNCC	3 cut(s)	78, 532, 818
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	5 cut(s)	261, 285, 532, 738, 743
SfcI	CTRYAG	1 cut(s)	707
SfoI	GGCGCC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	637
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	449, 746
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
Sse9I	AATT	3 cut(s)	170, 336, 550
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	2 cut(s)	356, 378
TaqI	TCGA	2 cut(s)	638, 764
TasI	AATT	3 cut(s)	170, 336, 550
TatI	WGTACW	3 cut(s)	457, 781, 795
Tru1I	TTAA	2 cut(s)	723, 786
Tru9I	TTAA	2 cut(s)	723, 786
TscAI	CASTG	1 cut(s)	509
TseFI	GTSAC	2 cut(s)	183, 868
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	2 cut(s)	183, 868
TspDTI	ATGAA	2 cut(s)	327, 467
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	2 cut(s)	336, 550
XceI	RCATGY	3 cut(s)	655, 779, 802
XcmI	CCANNNNNNNNNTGG	2 cut(s)	288, 542
XhoI	CTCGAG	1 cut(s)	637
XmaJI	CCTAGG	1 cut(s)	200
XmnI	GAANNNNTTC	2 cut(s)	440, 604
XspI	CTAG	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.