Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Reverse (-)

29043727 .. 29045170

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGCAATTAGGGATCGACTTTATCTCATTAGTTCAAGGAACTATGAGTGTCAGAGACTATGAGGCTCGATTTTCACAACTGTATCGGTTTGTCTGGCCGATGGATGCAGAAAAGCTGGCTCGTAGATTCGAGCAAGGACTGAACTATGAGATCAGGGACAGGGTGATTATCCTTCGGCTGCCTACTGTGGCACTGATATTGGATAGGGTTATGGCAATCGAGCGGGAACTCCAGGCTTCTCGGAGGGGGTCAACAATCGTGGGAGATTCCCGAGGAAAGGGAAAGGCAGTTACGGAAGGCAGTAATGCATCAGGTACTCAGGATGGGTCTTGGAAAAGACAGAGGATTTGTCAGCAGGCTTCAGATGGTGTGGCCGCTGAACCTATCTGGGTTGTACCTGTCGGAAAGTTAGCACCCTTGGGATGTTTCAACTGTTTTGAGGTGGGTCACTTGGCCAGACATTGCTTGAAGCCGAAGAAAAGGAAATGTTATAAGTGTGGGCAGATGGGACATGTTGTTCGGGAGTGTACCCAACCTAAAATTAAGAGAGAGAGAACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

188

Amino Acids

21.3

Weight (kDa)

9.6

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotrans_gag	PF03732	6 - 49	2.2e-06	Retrotransposon gag protein
zf-CCHC	PF00098	162 - 179	8.6e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	226, 378
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	3 cut(s)	98, 375, 456
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	319, 399, 532
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	38, 433, 472
AjnI	CCWGG	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	3 cut(s)	98, 375, 456
ApeKI	GCWGC	1 cut(s)	181
ArsI	GACNNNNNNTTYG	4 cut(s)	333, 365, 504, 536
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BalI	TGGCCA	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	4 cut(s)	97, 320, 362, 502
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	182, 378
BlsI	GCNGC	2 cut(s)	183, 379
Bme1390I	CCNGG	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	97, 320
BpmI	CTGGAG	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	274, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	274, 420
BseGI	GGATG	3 cut(s)	112, 331, 431
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	3 cut(s)	100, 377, 458
BsiHKCI	CYCGRG	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	173, 525
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	173, 525
BsnI	GGCC	3 cut(s)	100, 377, 458
BsoBI	CYCGRG	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	15, 153
BspACI	CCGC	2 cut(s)	226, 378
BspANI	GGCC	3 cut(s)	100, 377, 458
BspCNI	CTCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	274, 420
BssMI	GATC	2 cut(s)	15, 153
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	84, 190, 437
BstC8I	GCNNGC	2 cut(s)	120, 360
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	112, 331, 431
BstKTI	GATC	2 cut(s)	18, 156
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	15, 153
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	100, 377, 458
BtsCI	GGATG	3 cut(s)	112, 331, 431
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	120, 360
Csp6I	GTAC	3 cut(s)	318, 398, 531
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	3 cut(s)	318, 398, 531
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	17, 155
DpnII	GATC	2 cut(s)	15, 153
EaeI	YGGCCR	3 cut(s)	98, 375, 456
Eco130I	CCWWGG	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	518
FaiI	YATR	6 cut(s)	47, 63, 150, 215, 495, 516
FaqI	GGGAC	2 cut(s)	173, 525
FatI	CATG	1 cut(s)	514
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	182, 378
FokI	GGATG	3 cut(s)	119, 338, 438
Fsp4HI	GCNGC	2 cut(s)	182, 378
GluI	GCNGC	2 cut(s)	182, 378
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	100, 377, 458
Hin1II	CATG	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	129, 269
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	255, 531
Hpy188I	TCNGA	4 cut(s)	56, 246, 367, 407
Hpy188III	TCNNGA	3 cut(s)	273, 323, 524
Hpy8I	GTNNAC	2 cut(s)	255, 531
HpyAV	CCTTC	2 cut(s)	185, 293
HpyCH4III	ACNGT	3 cut(s)	84, 190, 437
HpyCH4V	TGCA	2 cut(s)	110, 311
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	518
Kzo9I	GATC	2 cut(s)	15, 153
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	97, 320
MaeIII	GTNAC	2 cut(s)	292, 449
MalI	GATC	2 cut(s)	17, 155
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	15, 153
MboII	GAAGA	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	2 cut(s)	8, 543
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	58, 240, 269, 339, 436
Mox20I	TGGCCA	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	2 cut(s)	546, 565
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	15, 153
NlaIII	CATG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	518
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	129, 269
PkrI	GCNGC	2 cut(s)	183, 379
PscI	ACATGT	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
RsaI	GTAC	3 cut(s)	319, 399, 532
RsaNI	GTAC	3 cut(s)	318, 398, 531
SaqAI	TTAA	2 cut(s)	546, 565
SatI	GCNGC	2 cut(s)	182, 378
Sau3AI	GATC	2 cut(s)	15, 153
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	6 cut(s)	120, 319, 388, 403, 447, 541
SfaNI	GCATC	2 cut(s)	97, 320
Sse9I	AATT	2 cut(s)	8, 543
SsiI	CCGC	2 cut(s)	226, 378
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	84, 190, 437
TaqI	TCGA	4 cut(s)	18, 70, 132, 222
TasI	AATT	2 cut(s)	8, 543
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	129, 269
Tru1I	TTAA	2 cut(s)	546, 565
Tru9I	TTAA	2 cut(s)	546, 565
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	201
XceI	RCATGY	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.