Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Forward (+)

279237 .. 283170

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGGAATGTGAATGGGAGAGAAGATGGGGGTGGAAGCCCATCAGCGGCTGAGGAAGAGAGTGGTGGTGGGAGCGTGCAGGAGGGTCATGCCCATGGCCGTGGTGTTAGTGGTGGCGGTGATGGGTCGTCTGAGTTGATGGGTCAATCGCCTCCTCATAGCCCTAGGGCCACTCACTCCCCTTTGATGTTTACTCCTCAGGTCCCTGTGGTTCCCTTACAAAGACCGGATGAGATACACATACCAAACAACTCATGGATGCAAACTTCAGGGTTTGAAGACATGTGCTGTGAGCAAGGAATTCCAACTATGATTACATGGAGCTATGGTGGGAAGGATGTAGCTGTGGAGGGATCCTGGGATAACTGGAAGACAAGAATGGCCTTACAGAGATCAGGGAAAGACTTCACGATCATGAAAGTACTGCCATCCGGTGTTTACCAGTATAGGTTTATTGTTGATGGGCAGTGGAGGTTCTCTCCTGATTTACCCTTGGCCCAAGATGATGCGGGCAATTCTTACAACCTTTTGGACTTGCAGGATTATGTTCCAGAAGACATTGGAAGCATTTCTGGCTTTGAACCTCCCCAGTCCCCTGACTCAAGTTATAACAACCTGCAGCTTGGATCTGAAGATTTCGCAAAGGAGCCGCCATTGGTTCCCCCACACCTACAAATGACACTGCTCAATGCGCCGTCATCTTACATGGAGATGCCGCCTCCTTTGTCAAGACCTCAACATGTGGTACTCAATCACCTTTACATGCAGAGAGGGAAGAGTGGCCCATCTGTGGTGGCACTTGGTACAACAGAGAGGTTTATAGCGAAGTATGTTACAGTGGTTCTCTACAAGTCCTTGCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

289

Amino Acids

31.43

Weight (kDa)

5.04

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
Acc36I	ACCTGC	1 cut(s)	624
AciI	CCGC	5 cut(s)	47, 117, 509, 650, 716
AclWI	GGATC	3 cut(s)	348, 361, 634
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	252, 651
AfaI	GTAC	3 cut(s)	423, 747, 805
AfiI	CCNNNNNNNGG	2 cut(s)	46, 790
AflIII	ACRYGT	2 cut(s)	282, 739
AgsI	TTSAA	2 cut(s)	278, 581
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	3 cut(s)	324, 344, 622
AluI	AGCT	3 cut(s)	324, 344, 622
AlwI	GGATC	3 cut(s)	348, 361, 634
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	5 cut(s)	97, 168, 381, 495, 781
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	2 cut(s)	404, 568
AspA2I	CCTAGG	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	4 cut(s)	168, 202, 496, 782
AsuHPI	GGTGA	2 cut(s)	131, 746
AvaII	GGWCC	1 cut(s)	202
AvrII	CCTAGG	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	353
BbsI	GAAGAC	3 cut(s)	285, 377, 561
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	7 cut(s)	20, 49, 116, 133, 436, 455, 793
BceAI	ACGGC	2 cut(s)	84, 679
BciT130I	CCWGG	1 cut(s)	358
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	4 cut(s)	48, 620, 650, 716
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	4 cut(s)	49, 621, 651, 717
BmcAI	AGTACT	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	4 cut(s)	168, 202, 496, 782
BmiI	GGNNCC	5 cut(s)	204, 213, 355, 648, 660
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	3 cut(s)	249, 496, 702
BmuI	ACTGGG	1 cut(s)	583
BpiI	GAAGAC	3 cut(s)	285, 377, 561
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	586
BsaJI	CCNNGG	5 cut(s)	94, 100, 164, 357, 492
BsaWI	WCCGGW	2 cut(s)	226, 431
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 790
Bse1I	ACTGG	3 cut(s)	371, 442, 589
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	5 cut(s)	94, 100, 164, 357, 492
BseGI	GGATG	4 cut(s)	235, 264, 343, 428
BseLI	CCNNNNNNNGG	2 cut(s)	46, 790
BseMII	CTCAG	3 cut(s)	42, 123, 212
BseNI	ACTGG	3 cut(s)	371, 442, 589
BseRI	GAGGAG	2 cut(s)	144, 186
BseXI	GCAGC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	5 cut(s)	99, 170, 383, 497, 783
BsiSI	CCGG	2 cut(s)	227, 432
BslFI	GGGAC	2 cut(s)	188, 577
BslI	CCNNNNNNNGG	2 cut(s)	46, 790
BsmFI	GGGAC	2 cut(s)	188, 577
BsnI	GGCC	5 cut(s)	99, 170, 383, 497, 783
Bsp143I	GATC	4 cut(s)	353, 392, 411, 626
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	5 cut(s)	47, 117, 509, 650, 716
BspANI	GGCC	5 cut(s)	99, 170, 383, 497, 783
BspCNI	CTCAG	3 cut(s)	43, 124, 211
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	5 cut(s)	204, 213, 355, 648, 660
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	3 cut(s)	348, 361, 634
BsrI	ACTGG	3 cut(s)	371, 442, 589
BssECI	CCNNGG	5 cut(s)	94, 100, 164, 357, 492
BssMI	GATC	4 cut(s)	353, 392, 411, 626
BssT1I	CCWWGG	3 cut(s)	94, 164, 492
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	838
Bst6I	CTCTTC	2 cut(s)	51, 770
BstC8I	GCNNGC	2 cut(s)	77, 511
BstDEI	CTNAG	3 cut(s)	51, 132, 198
BstDSI	CCRYGG	2 cut(s)	94, 100
BstF5I	GGATG	4 cut(s)	235, 264, 343, 428
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	4 cut(s)	356, 395, 414, 629
BstMBI	GATC	4 cut(s)	353, 392, 411, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 691
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	3 cut(s)	286, 743, 766
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	617
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	3 cut(s)	285, 377, 561
BstX2I	RGATCY	2 cut(s)	353, 626
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	2 cut(s)	353, 626
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	99, 170, 383, 497, 783
BtgI	CCRYGG	2 cut(s)	94, 100
BtsCI	GGATG	4 cut(s)	235, 264, 343, 428
BtsI	GCAGTG	2 cut(s)	473, 680
BtsIMutI	CAGTG	3 cut(s)	473, 680, 843
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	2 cut(s)	77, 511
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	4 cut(s)	168, 202, 496, 782
Csp6I	GTAC	3 cut(s)	422, 746, 804
CviAII	CATG	9 cut(s)	89, 95, 255, 283, 318, 415, 706, 740, 763
CviQI	GTAC	3 cut(s)	422, 746, 804
DdeI	CTNAG	3 cut(s)	51, 132, 198
DpnI	GATC	4 cut(s)	355, 394, 413, 628
DpnII	GATC	4 cut(s)	353, 392, 411, 626
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	51, 770
EarI	CTCTTC	2 cut(s)	51, 770
Eco130I	CCWWGG	3 cut(s)	94, 164, 492
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	252, 651
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	3 cut(s)	94, 164, 492
ErhI	CCWWGG	3 cut(s)	94, 164, 492
FaeI	CATG	9 cut(s)	92, 98, 258, 286, 321, 418, 709, 743, 766
FaqI	GGGAC	2 cut(s)	188, 577
FatI	CATG	9 cut(s)	88, 94, 254, 282, 317, 414, 705, 739, 762
FauI	CCCGC	1 cut(s)	502
Fnu4HI	GCNGC	4 cut(s)	48, 620, 650, 716
FokI	GGATG	4 cut(s)	242, 271, 350, 415
Fsp4HI	GCNGC	4 cut(s)	48, 620, 650, 716
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	4 cut(s)	48, 620, 650, 716
HaeIII	GGCC	5 cut(s)	99, 170, 383, 497, 783
HapII	CCGG	2 cut(s)	227, 432
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	9 cut(s)	92, 98, 258, 286, 321, 418, 709, 743, 766
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	227, 432
HphI	GGTGA	2 cut(s)	131, 746
Hpy166II	GTNNAC	2 cut(s)	192, 439
Hpy188I	TCNGA	2 cut(s)	133, 631
Hpy188III	TCNNGA	5 cut(s)	409, 415, 482, 551, 729
Hpy8I	GTNNAC	2 cut(s)	192, 439
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	838
HpyCH4V	TGCA	6 cut(s)	79, 262, 538, 619, 766, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 691
HpyF3I	CTNAG	3 cut(s)	51, 132, 198
Hsp92II	CATG	9 cut(s)	92, 98, 258, 286, 321, 418, 709, 743, 766
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	4 cut(s)	353, 392, 411, 626
LmnI	GCTCC	3 cut(s)	72, 321, 646
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	3 cut(s)	249, 496, 702
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	4 cut(s)	355, 394, 413, 628
MboI	GATC	4 cut(s)	353, 392, 411, 626
MboII	GAAGA	7 cut(s)	35, 68, 290, 382, 566, 644, 787
MflI	RGATCY	2 cut(s)	353, 626
MluCI	AATT	2 cut(s)	300, 514
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	329
MroXI	GAANNNNTTC	2 cut(s)	404, 568
MslI	CAYNNNNRTG	4 cut(s)	93, 99, 413, 710
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	227, 432
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	573, 691
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	353, 392, 411, 626
NlaIII	CATG	9 cut(s)	92, 98, 258, 286, 321, 418, 709, 743, 766
NlaIV	GGNNCC	5 cut(s)	204, 213, 355, 648, 660
NspI	RCATGY	3 cut(s)	286, 743, 766
PagI	TCATGA	1 cut(s)	414
PciI	ACATGT	2 cut(s)	282, 739
PdmI	GAANNNNTTC	2 cut(s)	404, 568
PkrI	GCNGC	4 cut(s)	49, 621, 651, 717
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	2 cut(s)	282, 739
PsiI	TTATAA	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	5 cut(s)	204, 213, 355, 648, 660
PspPI	GGNCC	4 cut(s)	168, 202, 496, 782
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	353, 626
RsaI	GTAC	3 cut(s)	423, 747, 805
RsaNI	GTAC	3 cut(s)	422, 746, 804
RseI	CAYNNNNRTG	4 cut(s)	93, 99, 413, 710
SatI	GCNGC	4 cut(s)	48, 620, 650, 716
Sau3AI	GATC	4 cut(s)	353, 392, 411, 626
Sau96I	GGNCC	4 cut(s)	168, 202, 496, 782
ScaI	AGTACT	1 cut(s)	423
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	358
SfaNI	GCATC	3 cut(s)	249, 496, 702
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	4 cut(s)	93, 99, 413, 710
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
Sse9I	AATT	2 cut(s)	300, 514
SsiI	CCGC	5 cut(s)	47, 117, 509, 650, 716
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	3 cut(s)	94, 164, 492
TaaI	ACNGT	1 cut(s)	838
TasI	AATT	2 cut(s)	300, 514
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	3 cut(s)	50, 652, 718
TscAI	CASTG	3 cut(s)	473, 687, 843
TseI	GCWGC	1 cut(s)	619
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	473, 687, 843
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	3 cut(s)	286, 743, 766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmaJI	CCTAGG	1 cut(s)	164
XmnI	GAANNNNTTC	2 cut(s)	404, 568
XspI	CTAG	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.