Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Forward (+)

208741 .. 212228

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGGAATGTGAATGGGAGAGAAGATGGGGGCGGAAGCCCATCGGCGGCGGCGGCCGAGGAAGAGGCCGGTGGCGGCACCGCCCAGGAGGGTCGTCACCCTCCGCTCGTCGGCGGTGGCGCAGGCGCGGTGGTGGCTGAATTGATGGGCCAGTCACCTCCTCATAGCCCTAGGGCTACTCACTCCCCTTTGATGTTCACTCCCCAAGTGCCTGTTGTTCCGTTACAAAGACCTGATGAGATGCAGATCCCAAACCCCTCGTGGATGCAAACTTCAGCGTACGAAGACATGTCCTGTGAGCAAGGAATTCCAACCATGTTTACGTGGAGCTATGGTGGGAAGGACGTAGCTGTGGAGGGATCATGGGATGATTGGAAGACAAGGTTGGCCTTACAGAGATCGGGGAAGGACTTTACTATTATGAAAGTACTGCCATCCGGTGTTTACCAGTATAGATTTGTTGTTGATGGGCAGTGGAGGTGTGCTCCTGACTTGCCTTTGTCCCACGATGATGCTGGAAATTCTTACAACCTTTTGGACTTGCAGGATTATGTTCCAGAAGACATTGGAAGCATTTCTGGTTTTGAACCTCCCCAGTCCCCTGACTCAAGTTATAGCAACATGCAGCTTGGATCTGAAGATTTTGCGAAGGAGCCGCCATTGGTACCTCCACATCTGCAGATGACACTGCTCAATGCCCCTTCATCTTGCATGGAGATGCCTGCTCCTTTATCAAGACCTCAACATGTTGTACTTAATCATTTATACATGCAGAGAGGGAAGAGTGGCCCATCTGTGGTCGCTCTTGGCACAACAGAGAGGTTTATAGCAAAGTATGTGACAGTGGTTCTCTACAAGTCCTTGCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

291

Amino Acids

31.44

Weight (kDa)

4.96

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	103 - 182	1.8e-31	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	215 - 287	7.5e-26	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	664
AccB1I	GGYRCC	2 cut(s)	77, 664
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	1 cut(s)	128
AclWI	GGATC	3 cut(s)	241, 367, 640
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	306, 520
AcuI	CTGAAG	2 cut(s)	258, 657
AfaI	GTAC	4 cut(s)	281, 429, 666, 753
AfiI	CCNNNNNNNGG	3 cut(s)	46, 110, 796
AflIII	ACRYGT	2 cut(s)	288, 745
AgsI	TTSAA	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	3 cut(s)	330, 350, 628
AluI	AGCT	3 cut(s)	330, 350, 628
Alw21I	GWGCWC	1 cut(s)	487
AlwI	GGATC	3 cut(s)	241, 367, 640
AoxI	GGCC	5 cut(s)	54, 66, 148, 387, 787
ApeKI	GCWGC	1 cut(s)	625
ApoI	RAATTY	2 cut(s)	306, 520
Asp700I	GAANNNNTTC	1 cut(s)	574
Asp718I	GGTACC	1 cut(s)	664
AspA2I	CCTAGG	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	122, 128
AspS9I	GGNCC	2 cut(s)	148, 788
AsuHPI	GGTGA	2 cut(s)	89, 147
AvrII	CCTAGG	1 cut(s)	170
BanI	GGYRCC	2 cut(s)	77, 664
BauI	CACGAG	1 cut(s)	259
BbsI	GAAGAC	3 cut(s)	291, 383, 567
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	6 cut(s)	20, 49, 139, 442, 461, 799
BciT130I	CCWGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	677
BisI	GCNGC	6 cut(s)	48, 51, 54, 76, 626, 656
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	6 cut(s)	49, 52, 55, 77, 627, 657
BmcAI	AGTACT	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	148, 788
BmiI	GGNNCC	3 cut(s)	79, 654, 666
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	4 cut(s)	231, 255, 502, 708
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	3 cut(s)	291, 383, 567
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
BpuEI	CTTGAG	1 cut(s)	592
BsaAI	YACGTR	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	57, 84, 170
BsaWI	WCCGGW	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 110, 796
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	151, 448, 595
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	57, 84, 170
BseGI	GGATG	3 cut(s)	270, 373, 434
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	3 cut(s)	46, 110, 796
BseNI	ACTGG	3 cut(s)	151, 448, 595
BseRI	GAGGAG	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	5 cut(s)	56, 68, 150, 389, 789
BshNI	GGYRCC	2 cut(s)	77, 664
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	69, 438
BsiWI	CGTACG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	487, 583
BslI	CCNNNNNNNGG	3 cut(s)	46, 110, 796
BsmFI	GGGAC	2 cut(s)	487, 583
BsnI	GGCC	5 cut(s)	56, 68, 150, 389, 789
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	246, 359, 398, 632
BspANI	GGCC	5 cut(s)	56, 68, 150, 389, 789
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	79, 654, 666
BspMAI	CTGCAG	1 cut(s)	681
BspPI	GGATC	3 cut(s)	241, 367, 640
BspT107I	GGYRCC	2 cut(s)	77, 664
BsrBI	CCGCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	3 cut(s)	151, 448, 595
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	57, 84, 170
BssMI	GATC	4 cut(s)	246, 359, 398, 632
BssSI	CACGAG	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	2 cut(s)	57, 776
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	124, 723
BstF5I	GGATG	3 cut(s)	270, 373, 434
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	122, 128
BstKTI	GATC	4 cut(s)	249, 362, 401, 635
BstMBI	GATC	4 cut(s)	246, 359, 398, 632
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 134
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	4 cut(s)	292, 625, 749, 772
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	677
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	637
BstV2I	GAAGAC	3 cut(s)	291, 383, 567
BstX2I	RGATCY	2 cut(s)	246, 632
BstYI	RGATCY	2 cut(s)	246, 632
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	56, 68, 150, 389, 789
BtsCI	GGATG	3 cut(s)	270, 373, 434
BtsI	GCAGTG	2 cut(s)	479, 686
BtsIMutI	CAGTG	3 cut(s)	479, 686, 849
Cac8I	GCNNGC	2 cut(s)	124, 723
CfoI	GCGC	2 cut(s)	122, 128
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	148, 788
Csp6I	GTAC	4 cut(s)	280, 428, 665, 752
CviAII	CATG	7 cut(s)	289, 316, 363, 622, 712, 746, 769
CviQI	GTAC	4 cut(s)	280, 428, 665, 752
DpnI	GATC	4 cut(s)	248, 361, 400, 634
DpnII	GATC	4 cut(s)	246, 359, 398, 632
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	57, 776
EarI	CTCTTC	2 cut(s)	57, 776
EciI	GGCGGA	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	258, 657
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	7 cut(s)	292, 319, 366, 625, 715, 749, 772
FaqI	GGGAC	2 cut(s)	487, 583
FatI	CATG	7 cut(s)	288, 315, 362, 621, 711, 745, 768
Fnu4HI	GCNGC	6 cut(s)	48, 51, 54, 76, 626, 656
FokI	GGATG	3 cut(s)	277, 380, 421
Fsp4HI	GCNGC	6 cut(s)	48, 51, 54, 76, 626, 656
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	2 cut(s)	121, 127
GluI	GCNGC	6 cut(s)	48, 51, 54, 76, 626, 656
HaeIII	GGCC	5 cut(s)	56, 68, 150, 389, 789
HapII	CCGG	2 cut(s)	69, 438
HhaI	GCGC	2 cut(s)	122, 128
Hin1II	CATG	7 cut(s)	292, 319, 366, 625, 715, 749, 772
Hin6I	GCGC	2 cut(s)	120, 126
HinP1I	GCGC	2 cut(s)	120, 126
HinfI	GANTC	1 cut(s)	605
HpaII	CCGG	2 cut(s)	69, 438
HphI	GGTGA	2 cut(s)	89, 147
Hpy166II	GTNNAC	3 cut(s)	198, 321, 445
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	3 cut(s)	488, 557, 735
Hpy8I	GTNNAC	3 cut(s)	198, 321, 445
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	334, 400, 643, 711
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4IV	ACGT	2 cut(s)	323, 345
HpyCH4V	TGCA	8 cut(s)	244, 268, 544, 625, 679, 711, 772, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 134
HpySE526I	ACGT	2 cut(s)	323, 345
Hsp92II	CATG	7 cut(s)	292, 319, 366, 625, 715, 749, 772
HspAI	GCGC	2 cut(s)	120, 126
KpnI	GGTACC	1 cut(s)	668
Kzo9I	GATC	4 cut(s)	246, 359, 398, 632
LmnI	GCTCC	4 cut(s)	327, 490, 652, 730
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	4 cut(s)	231, 255, 502, 708
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	2 cut(s)	323, 345
MaeIII	GTNAC	4 cut(s)	95, 153, 222, 838
MalI	GATC	4 cut(s)	248, 361, 400, 634
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	4 cut(s)	246, 359, 398, 632
MboII	GAAGA	7 cut(s)	35, 74, 296, 388, 572, 650, 793
MflI	RGATCY	2 cut(s)	246, 632
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	3 cut(s)	140, 306, 520
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	574
MseI	TTAA	1 cut(s)	756
MslI	CAYNNNNRTG	2 cut(s)	510, 716
MspI	CCGG	2 cut(s)	69, 438
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	53, 134
NdeII	GATC	4 cut(s)	246, 359, 398, 632
NlaIII	CATG	7 cut(s)	292, 319, 366, 625, 715, 749, 772
NlaIV	GGNNCC	3 cut(s)	79, 654, 666
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	3 cut(s)	95, 153, 838
NspI	RCATGY	4 cut(s)	292, 625, 749, 772
PciI	ACATGT	2 cut(s)	288, 745
PdmI	GAANNNNTTC	1 cut(s)	574
Pfl23II	CGTACG	1 cut(s)	279
PkrI	GCNGC	6 cut(s)	49, 52, 55, 77, 627, 657
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	324
PscI	ACATGT	2 cut(s)	288, 745
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspLI	CGTACG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	79, 654, 666
PspPI	GGNCC	2 cut(s)	148, 788
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	2 cut(s)	246, 632
RsaI	GTAC	4 cut(s)	281, 429, 666, 753
RsaNI	GTAC	4 cut(s)	280, 428, 665, 752
RseI	CAYNNNNRTG	2 cut(s)	510, 716
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	6 cut(s)	48, 51, 54, 76, 626, 656
Sau3AI	GATC	4 cut(s)	246, 359, 398, 632
Sau96I	GGNCC	2 cut(s)	148, 788
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	4 cut(s)	231, 255, 502, 708
SfcI	CTRYAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	2 cut(s)	510, 716
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
Sse9I	AATT	3 cut(s)	140, 306, 520
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	844
TaiI	ACGT	2 cut(s)	326, 348
TasI	AATT	3 cut(s)	140, 306, 520
TatI	WGTACW	2 cut(s)	427, 751
TauI	GCSGC	5 cut(s)	50, 53, 56, 78, 658
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	3 cut(s)	479, 693, 849
TseFI	GTSAC	3 cut(s)	95, 153, 838
TseI	GCWGC	1 cut(s)	625
Tsp45I	GTSAC	3 cut(s)	95, 153, 838
TspDTI	ATGAA	2 cut(s)	437, 693
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	3 cut(s)	479, 693, 849
XapI	RAATTY	2 cut(s)	306, 520
XceI	RCATGY	4 cut(s)	292, 625, 749, 772
XcmI	CCANNNNNNNNNTGG	2 cut(s)	258, 512
XmaJI	CCTAGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.