Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003241

Physical Location & Seq

Genomic Coordinates Reverse (-)

48512092 .. 48515782

Gene Structure 3691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGAAATACTAACGGCAGAGAAGAGGAGGAGGAGGAGGGAGAGGAGGAGGAGATCCAAGATGTGGTCGTCGTCAATGGCCAACTAGATATTGGGATGGAATCCGTGGAACCCTTGTTCTCTCCCCAGGTTCCTGTAGCTCCTCTTCAAAGGGGTGAGGGCATTCCTGAATTTCCTCAAATGTGGACGACTGAATTTCAAGGTGTTGATCGTCCTCCTGAACAAGGAATTCCCACCATGATTACATGGAACTATGGTGGGAACAATTTGGCTGTGGAGGGTTCTTGGGACAATTGGAAATCTAGGAAATCACTACAGAGATCTGGTAAGGATCATTCAGTTCTTTTGGTCTTGCCATCAGGCATATACCGGTACAAGTTCATTGTTGATGGTGAACCGAGATATATCCCAGATCTTCCATTCATAGCTGATGAAATGGGCCATGTTTGTAATCTTCTTGATGTTCATGACTATGTGCCAGAAAATTTGGACAGTGTGGCTGAGTTTGAGGCTCCAGCTTCCCCAGAATCCAGCTATGATCAAGCATTTCCAGCTGAGGAAGACCTTACAAAGGAACCAGTGGTTATCCCACCACAGCTGCAACTGACTGTCCTTGGCATGGAGGATTCAAATGAGGATTCTCCAAAGCCTCGACATGTTGTACTTAACCACCTTTTTATAGAAAAAGGATGGGCCTCACAATCTATGGTTTCCCTGGGACTAACTCACAGGTTTGAGTCTAAATATGTGACTGTTGTCCTATATAAATCACTTAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

261

Amino Acids

29.3

Weight (kDa)

4.46

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	77 - 157	3.6e-30	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	191 - 257	6.7e-22	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21170 AT5G21170 AT5G21170
fragaria_vesca	FvH4_1g28790 FvH4_1g28790 FvH4_3g00390
malus_domestica	MD05G1360800.v1.1 MD10G1338400.v1.1 MD15G1312500.v1.1
prunus_persica	Prupe.4G004500_v2.0.a1
pyrus_communis	pycom05g32760 pycom10g28820
rosa_chinensis	RchiOBHm_Chr5g0000591 RchiOBHm_Chr5g0050101
rosa_laevigata	RLG00000030878 RLG00000034686
rosa_multiflora	Rmu_sc0002289.1_g000010 Rmu_sc0003699.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031050 Rroxscaffold_1G00075620
rosa_rugosa	Rorug04G0385100 Rorug04G0385100 Rorug04G0385200 Rorug04G0385300.1 Rorug05G0258500 Rorug05G0258600 Rorug05G0258700 Rorug05G0258800
rosa_samantha	Rh5AG004800 Rh5AG330500 Rh5BG006400 Rh5BG341200 Rh5CG005200 Rh5DG005200 Rh5DG354000
rosa_wichuraiana	Rw5G000480 Rw5G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AclWI	GGATC	2 cut(s)	49, 339
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	4 cut(s)	170, 194, 228, 484
AfaI	GTAC	2 cut(s)	374, 663
AfiI	CCNNNNNNNGG	4 cut(s)	64, 224, 571, 619
AflIII	ACRYGT	1 cut(s)	655
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	149, 200, 630
AjnI	CCWGG	2 cut(s)	126, 714
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	140, 428, 518, 534, 554, 598
AluI	AGCT	6 cut(s)	140, 428, 518, 534, 554, 598
AlwI	GGATC	2 cut(s)	49, 339
AoxI	GGCC	3 cut(s)	79, 439, 693
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	4 cut(s)	170, 194, 228, 484
AsiGI	ACCGGT	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	439, 693
AsuHPI	GGTGA	2 cut(s)	167, 404
BalI	TGGCCA	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
BbsI	GAAGAC	1 cut(s)	567
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	4 cut(s)	91, 364, 383, 684
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	128, 716
BclI	TGATCA	1 cut(s)	538
BfaI	CTAG	2 cut(s)	86, 303
BfmI	CTRYAG	2 cut(s)	135, 314
BglII	AGATCT	2 cut(s)	320, 412
BisI	GCNGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	600
Bme1390I	CCNGG	2 cut(s)	128, 716
BmgT120I	GGNCC	2 cut(s)	439, 693
BmiI	GGNNCC	4 cut(s)	111, 132, 513, 576
BmrFI	CCNGG	2 cut(s)	128, 716
BoxI	GACNNNNGTC	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	555
BsaJI	CCNNGG	5 cut(s)	105, 126, 613, 714, 715
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 224, 571, 619
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	578
BseBI	CCWGG	2 cut(s)	128, 716
BseDI	CCNNGG	5 cut(s)	105, 126, 613, 714, 715
BseGI	GGATG	2 cut(s)	102, 695
BseLI	CCNNNNNNNGG	4 cut(s)	64, 224, 571, 619
BseMII	CTCAG	2 cut(s)	492, 546
BseNI	ACTGG	1 cut(s)	578
BseRI	GAGGAG	8 cut(s)	41, 44, 47, 50, 59, 62, 65, 132
BseXI	GCAGC	1 cut(s)	585
BshFI	GGCC	3 cut(s)	81, 441, 695
BshTI	ACCGGT	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	302, 732
BslI	CCNNNNNNNGG	4 cut(s)	64, 224, 571, 619
BsmFI	GGGAC	2 cut(s)	302, 732
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	81, 441, 695
Bsp143I	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
BspANI	GGCC	3 cut(s)	81, 441, 695
BspCNI	CTCAG	2 cut(s)	493, 547
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	111, 132, 513, 576
BspPI	GGATC	2 cut(s)	49, 339
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	5 cut(s)	105, 126, 613, 714, 715
BssMI	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
BssT1I	CCWWGG	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	128, 716
Bst4CI	ACNGT	3 cut(s)	494, 610, 754
Bst6I	CTCTTC	2 cut(s)	18, 150
BstDEI	CTNAG	2 cut(s)	501, 555
BstDSI	CCRYGG	1 cut(s)	105
BstENI	CCTNNNNNAGG	2 cut(s)	222, 569
BstF5I	GGATG	2 cut(s)	102, 695
BstKTI	GATC	6 cut(s)	57, 211, 323, 334, 415, 541
BstMBI	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	128, 716
BstNSI	RCATGY	1 cut(s)	659
BstPAI	GACNNNNGTC	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	126, 714
BstSFI	CTRYAG	2 cut(s)	135, 314
BstV1I	GCAGC	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	3 cut(s)	54, 320, 412
BstYI	RGATCY	3 cut(s)	54, 320, 412
BsuRI	GGCC	3 cut(s)	81, 441, 695
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	102, 695
BtsIMutI	CAGTG	2 cut(s)	499, 585
CciI	TCATGA	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	439, 693
Csp6I	GTAC	2 cut(s)	373, 662
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	6 cut(s)	238, 246, 443, 467, 619, 656
CviQI	GTAC	2 cut(s)	373, 662
DdeI	CTNAG	2 cut(s)	501, 555
DpnI	GATC	6 cut(s)	56, 210, 322, 333, 414, 540
DpnII	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	18, 150
EarI	CTCTTC	2 cut(s)	18, 150
Eco130I	CCWWGG	1 cut(s)	613
EcoNI	CCTNNNNNAGG	2 cut(s)	222, 569
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	126, 714
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	6 cut(s)	241, 249, 446, 470, 622, 659
FaqI	GGGAC	2 cut(s)	302, 732
FatI	CATG	6 cut(s)	237, 245, 442, 466, 618, 655
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	599
FokI	GGATG	2 cut(s)	109, 702
Fsp4HI	GCNGC	1 cut(s)	599
FspBI	CTAG	2 cut(s)	86, 303
GluI	GCNGC	1 cut(s)	599
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	81, 441, 695
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	6 cut(s)	241, 249, 446, 470, 622, 659
HinfI	GANTC	5 cut(s)	101, 527, 626, 638, 737
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	167, 404
Hpy166II	GTNNAC	2 cut(s)	186, 395
Hpy188III	TCNNGA	4 cut(s)	167, 218, 458, 467
Hpy8I	GTNNAC	2 cut(s)	186, 395
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	3 cut(s)	494, 610, 754
HpyCH4V	TGCA	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	501, 555
Hsp92II	CATG	6 cut(s)	241, 249, 446, 470, 622, 659
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
LmnI	GCTCC	2 cut(s)	145, 517
Lsp1109I	GCAGC	1 cut(s)	585
MaeI	CTAG	2 cut(s)	86, 303
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	6 cut(s)	56, 210, 322, 333, 414, 540
MboI	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
MboII	GAAGA	5 cut(s)	35, 137, 407, 446, 572
MfeI	CAATTG	1 cut(s)	292
MflI	RGATCY	3 cut(s)	54, 320, 412
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	6 cut(s)	170, 194, 228, 265, 292, 484
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	746
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	2 cut(s)	666, 774
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	554, 598
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	128, 716
MunI	CAATTG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	128, 716
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
NlaIII	CATG	6 cut(s)	241, 249, 446, 470, 622, 659
NlaIV	GGNNCC	4 cut(s)	111, 132, 513, 576
NmuCI	GTSAC	1 cut(s)	748
NspI	RCATGY	1 cut(s)	659
PagI	TCATGA	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	715
PciI	ACATGT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	162
PfeI	GAWTC	4 cut(s)	101, 527, 626, 638
PflMI	CCANNNNNTGG	1 cut(s)	64
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	600
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PscI	ACATGT	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	126, 714
PspGI	CCWGG	2 cut(s)	126, 714
PspN4I	GGNNCC	4 cut(s)	111, 132, 513, 576
PspPI	GGNCC	2 cut(s)	439, 693
PsuI	RGATCY	3 cut(s)	54, 320, 412
PvuII	CAGCTG	2 cut(s)	554, 598
RsaI	GTAC	2 cut(s)	374, 663
RsaNI	GTAC	2 cut(s)	373, 662
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	666, 774
SatI	GCNGC	1 cut(s)	599
Sau3AI	GATC	6 cut(s)	54, 208, 320, 331, 412, 538
Sau96I	GGNCC	2 cut(s)	439, 693
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	2 cut(s)	128, 716
SfcI	CTRYAG	2 cut(s)	135, 314
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	6 cut(s)	170, 194, 228, 265, 292, 484
SspMI	CTAG	2 cut(s)	86, 303
StyD4I	CCNGG	2 cut(s)	126, 714
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	494, 610, 754
TaqI	TCGA	1 cut(s)	652
TasI	AATT	6 cut(s)	170, 194, 228, 265, 292, 484
TatI	WGTACW	1 cut(s)	661
TfiI	GAWTC	4 cut(s)	101, 527, 626, 638
Tru1I	TTAA	2 cut(s)	666, 774
Tru9I	TTAA	2 cut(s)	666, 774
TscAI	CASTG	2 cut(s)	499, 585
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	4 cut(s)	370, 412, 447, 455
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	499, 585
Van91I	CCANNNNNTGG	1 cut(s)	64
XagI	CCTNNNNNAGG	2 cut(s)	222, 569
XapI	RAATTY	4 cut(s)	170, 194, 228, 484
XceI	RCATGY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	2 cut(s)	86, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.