AT5G22790

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010785
Physical Location & Seq
Reverse (-)
7599081 .. 7602522
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22790.1

Sequence Viewer

Length: 1302 bp
ATGTCTATTTCCCTAAAAATTTCCCACATTTCAAGTTTCTCCAACGATGGGTTCAATAGTGTAAAGCAATGCAGAGTGAGTCAAAGGTTTGAAATTAGATCGGTTTGTTTCCGTAGAAGCCCTGGTGTTGAATCTAGACGGATCCATTTAAATTCGGACTTGTCTTCTCGGAATTTGAGAAACCGATGTGTAGGATCGGATGTGGTTACGGGTGAAATATCCGGTAGATCGATACCGGATTGGGCTTATAGTGGCGTAAAAGATGAGACTTTAAGCGATTTGGAGCCGGAACTTGATGATGGTGATGGCGGCGATGAGAATGGGAACAACGACGGTGGTGGAAATGGTGGTAATGGAGACGGAGGAGGAGGAGGTGGAGATGGAGAAGGAGATGATGGAGAGGATGAAGCAGATAAAGCTGAGGAGAAGGAGTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAAGAGACAGAACGTAGAGGGATTACGTTACCGGAGGATATGTTGGAAGCGGCTAAATCCGTGGGGATTCGAAAACTGTTCCTTCTTCGTTACCTTGATCTACAGGGTTCTGTTTGGCCGCTTGGGTTTCTGATGAGATCATGTGCGATGCTTCGAAATAGAATGCTTGCAGATCCTTCATTTCTCTTCAAAGTTGGAACCGAGGTAGCCATAGACTCTTGCTGTGCAACTTTTGCAGAAGTACAGAAGAGAGGGGAAGATTTCTGGTCAGAGTTTGAGTTATATGCTGCTGATCTTTTAGTTGGTCTTGTGGTTGATGTTGCCTTGGTTGGACTTTTGGCTCCTTATGCACGTATCGGGAAGCCGTCTGTGGCATCAACAGGTTTATTCAAGGATCTTAAACGTGCTTGTGCATCCCTTCCTAGCAGTGTTTTTGAAGCAGAAAGACCGGGTTGTAAATTCTCAGTTAACCAGCGGATTGCAACATTCTTCTACAAGGGCCTCTTGTATGGGTCGGTTGGATTCGGCTGCGGCCTCATTGGTCAGGGAATTGCAAATCTGATCATGACAGCAAAACGGAGTGTGAAGAAATCAGAGGAAGACGTCCCTATTCCACCTCTTTTCGAAAGCGCTGCTCTCTGGGGTGTGTTCCTCGGCTTATCTTCCAATGCGCGTTACCAAATCATCAACGGCCTCGAACGCGTCGTGGAAGGTTCTACAGCGGCCAAACGTATCCCTGTGGTCGCTATGGCATTCACGGTGGGAGTCCGGTTTGCTAACAATGTGTATGGCGGTATGCAATTTGTAGATTGGGCTAAATTGTCCGGCGTTCAGTAA

Protein Analysis

433

Amino Acids

46.83

Weight (kDa)

5.14

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 208 - 387 1.4e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1071
AccII CGCG 2 cut(s) 1138, 1167
AciI CCGC 7 cut(s) 309, 515, 584, 940, 996, 1187, 1257
AclWI GGATC 5 cut(s) 136, 149, 202, 632, 867
AcoI YGGCCR 2 cut(s) 581, 1188
AcsI RAATTY 4 cut(s) 18, 151, 172, 923
AcyI GRCGYC 1 cut(s) 1068
AfaI GTAC 1 cut(s) 708
AfeI AGCGCT 1 cut(s) 1096
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 1165
AgsI TTSAA 9 cut(s) 33, 55, 92, 131, 448, 455, 655, 856, 902
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 3 cut(s) 260, 351, 464
AlwI GGATC 5 cut(s) 136, 149, 202, 632, 867
Aor51HI AGCGCT 1 cut(s) 1096
AoxI GGCC 5 cut(s) 581, 964, 997, 1156, 1188
ApeKI GCWGC 3 cut(s) 752, 993, 1097
ApoI RAATTY 4 cut(s) 18, 151, 172, 923
AspLEI GCGC 2 cut(s) 1097, 1138
AspS9I GGNCC 2 cut(s) 437, 964
AsuC2I CCSGG 1 cut(s) 915
AsuHPI GGTGA 2 cut(s) 224, 314
AsuII TTCGAA 3 cut(s) 535, 619, 1089
AvaII GGWCC 1 cut(s) 437
BamHI GGATCC 1 cut(s) 141
BbsI GAAGAC 2 cut(s) 156, 1071
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 739, 980, 1084
BccI CCATC 5 cut(s) 41, 293, 299, 374, 389
BceAI ACGGC 2 cut(s) 814, 1171
BcgI CGANNNNNNTGC 2 cut(s) 1079, 1113
BciT130I CCWGG 1 cut(s) 123
BciVI GTATCC 1 cut(s) 1208
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 1 cut(s) 915
BcoDI GTCTC 3 cut(s) 260, 351, 464
BfaI CTAG 2 cut(s) 135, 888
BfmI CTRYAG 2 cut(s) 566, 1182
BfoI RGCGCY 1 cut(s) 1098
BfuI GTATCC 1 cut(s) 1208
BisI GCNGC 8 cut(s) 310, 516, 584, 753, 994, 997, 1098, 1188
BlsI GCNGC 8 cut(s) 311, 517, 585, 754, 995, 998, 1099, 1189
Bme1390I CCNGG 2 cut(s) 123, 915
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 437, 964
BmiI GGNNCC 4 cut(s) 143, 285, 664, 807
BmrFI CCNGG 2 cut(s) 123, 915
BmsI GCATC 3 cut(s) 603, 848, 887
BpiI GAAGAC 2 cut(s) 156, 1071
Bpu10I CCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 3 cut(s) 535, 619, 1089
BpuMI CCSGG 1 cut(s) 915
Bsa29I ATCGAT 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 1068
BsaJI CCNNGG 5 cut(s) 121, 525, 666, 789, 1117
BsaWI WCCGGW 4 cut(s) 221, 235, 496, 1233
BsaXI ACNNNNNCTCC 4 cut(s) 416, 446, 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 123
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 5 cut(s) 121, 525, 666, 789, 1117
BseGI GGATG 3 cut(s) 205, 409, 878
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 411, 942
BseRI GAGGAG 4 cut(s) 378, 381, 384, 437
BseXI GCAGC 3 cut(s) 739, 980, 1084
Bsh1236I CGCG 2 cut(s) 1138, 1167
BshFI GGCC 5 cut(s) 583, 966, 999, 1158, 1190
BshVI ATCGAT 1 cut(s) 230
BsiSI CCGG 7 cut(s) 222, 236, 287, 497, 914, 1234, 1290
BslFI GGGAC 1 cut(s) 1055
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 3 cut(s) 260, 351, 464
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 1055
BsmI GAATGC 2 cut(s) 633, 1217
BsnI GGCC 5 cut(s) 583, 966, 999, 1158, 1190
Bsp119I TTCGAA 3 cut(s) 535, 619, 1089
BspACI CCGC 7 cut(s) 309, 515, 584, 940, 996, 1187, 1257
BspANI GGCC 5 cut(s) 583, 966, 999, 1158, 1190
BspCNI CTCAG 2 cut(s) 412, 941
BspDI ATCGAT 1 cut(s) 230
BspFNI CGCG 2 cut(s) 1138, 1167
BspHI TCATGA 1 cut(s) 1029
BspLI GGNNCC 4 cut(s) 143, 285, 664, 807
BspPI GGATC 5 cut(s) 136, 149, 202, 632, 867
BspT104I TTCGAA 3 cut(s) 535, 619, 1089
BsrDI GCAATG 1 cut(s) 74
BssECI CCNNGG 5 cut(s) 121, 525, 666, 789, 1117
BssNI GRCGYC 1 cut(s) 1068
BssT1I CCWWGG 1 cut(s) 789
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 335, 543, 1225
Bst6I CTCTTC 2 cut(s) 656, 707
BstACI GRCGYC 1 cut(s) 1068
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 818
BstBI TTCGAA 3 cut(s) 535, 619, 1089
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 420, 928
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 3 cut(s) 205, 409, 878
BstFNI CGCG 2 cut(s) 1138, 1167
BstH2I RGCGCY 1 cut(s) 1098
BstHHI GCGC 2 cut(s) 1097, 1138
BstMAI GTCTC 3 cut(s) 260, 351, 464
BstMWI GCNNNNNNNGC 4 cut(s) 416, 698, 812, 1164
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 121, 913
BstSFI CTRYAG 2 cut(s) 566, 1182
BstUI CGCG 2 cut(s) 1138, 1167
BstV1I GCAGC 3 cut(s) 739, 980, 1084
BstV2I GAAGAC 2 cut(s) 156, 1071
BstX2I RGATCY 3 cut(s) 141, 637, 859
BstYI RGATCY 3 cut(s) 141, 637, 859
Bsu15I ATCGAT 1 cut(s) 230
BsuI GTATCC 1 cut(s) 1208
BsuRI GGCC 5 cut(s) 583, 966, 999, 1158, 1190
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 525
BtgZI GCGATG 2 cut(s) 327, 626
BtsCI GGATG 3 cut(s) 205, 409, 878
BtsI GCAGTG 1 cut(s) 898
BtsIMutI CAGTG 1 cut(s) 898
Cac8I GCNNGC 1 cut(s) 633
CciI TCATGA 1 cut(s) 1029
CfoI GCGC 2 cut(s) 1097, 1138
Cfr13I GGNCC 2 cut(s) 437, 964
ClaI ATCGAT 1 cut(s) 230
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 1 cut(s) 707
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 2 cut(s) 606, 1030
CviQI GTAC 1 cut(s) 707
DdeI CTNAG 2 cut(s) 420, 928
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 2 cut(s) 581, 1188
Eam1104I CTCTTC 2 cut(s) 656, 707
EarI CTCTTC 2 cut(s) 656, 707
Eco130I CCWWGG 1 cut(s) 789
Eco47I GGWCC 1 cut(s) 437
Eco47III AGCGCT 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 2 cut(s) 609, 1033
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FaqI GGGAC 1 cut(s) 1055
FatI CATG 2 cut(s) 605, 1029
FbaI TGATCA 1 cut(s) 1026
Fnu4HI GCNGC 8 cut(s) 310, 516, 584, 753, 994, 997, 1098, 1188
FokI GGATG 3 cut(s) 212, 416, 865
Fsp4HI GCNGC 8 cut(s) 310, 516, 584, 753, 994, 997, 1098, 1188
FspBI CTAG 2 cut(s) 135, 888
GlaI GCGC 2 cut(s) 1096, 1137
GluI GCNGC 8 cut(s) 310, 516, 584, 753, 994, 997, 1098, 1188
HaeII RGCGCY 1 cut(s) 1098
HaeIII GGCC 5 cut(s) 583, 966, 999, 1158, 1190
HapII CCGG 7 cut(s) 222, 236, 287, 497, 914, 1234, 1290
HgaI GACGC 1 cut(s) 1156
HhaI GCGC 2 cut(s) 1097, 1138
Hin1I GRCGYC 1 cut(s) 1068
Hin1II CATG 2 cut(s) 609, 1033
Hin6I GCGC 2 cut(s) 1095, 1136
HinP1I GCGC 2 cut(s) 1095, 1136
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HinfI GANTC 6 cut(s) 79, 131, 532, 680, 987, 1230
HpaI GTTAAC 1 cut(s) 934
HpaII CCGG 7 cut(s) 222, 236, 287, 497, 914, 1234, 1290
HphI GGTGA 2 cut(s) 224, 314
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 8 cut(s) 157, 171, 199, 441, 597, 736, 1026, 1060
Hpy188III TCNNGA 3 cut(s) 135, 823, 1030
Hpy8I GTNNAC 1 cut(s) 934
Hpy99I CGWCG 2 cut(s) 335, 1172
HpyAV CCTTC 6 cut(s) 380, 421, 557, 651, 893, 1169
HpyCH4III ACNGT 3 cut(s) 335, 543, 1225
HpyCH4IV ACGT 6 cut(s) 478, 491, 817, 868, 1068, 1195
HpyCH4V TGCA 9 cut(s) 72, 635, 692, 701, 815, 878, 947, 1019, 1264
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 698, 812, 1164
HpyF3I CTNAG 2 cut(s) 420, 928
HpySE526I ACGT 6 cut(s) 478, 491, 817, 868, 1068, 1195
Hsp92I GRCGYC 1 cut(s) 1068
Hsp92II CATG 2 cut(s) 609, 1033
HspAI GCGC 2 cut(s) 1095, 1136
Ksp22I TGATCA 1 cut(s) 1026
KspAI GTTAAC 1 cut(s) 934
LmnI GCTCC 2 cut(s) 283, 811
Lsp1109I GCAGC 3 cut(s) 739, 980, 1084
LweI GCATC 3 cut(s) 603, 848, 887
MaeI CTAG 2 cut(s) 135, 888
MaeII ACGT 6 cut(s) 478, 491, 817, 868, 1068, 1195
MaeIII GTNAC 4 cut(s) 205, 492, 554, 1139
MflI RGATCY 3 cut(s) 141, 637, 859
MluCI AATT 8 cut(s) 18, 93, 151, 172, 923, 1014, 1265, 1283
MluI ACGCGT 1 cut(s) 1165
MlyI GAGTC 3 cut(s) 88, 674, 1239
MmeI TCCRAC 5 cut(s) 66, 489, 640, 775, 964
MseI TTAA 4 cut(s) 149, 272, 864, 933
MspA1I CMGCKG 2 cut(s) 940, 1187
MspI CCGG 7 cut(s) 222, 236, 287, 497, 914, 1234, 1290
MspR9I CCNGG 2 cut(s) 123, 915
Mva1269I GAATGC 2 cut(s) 633, 1217
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 2 cut(s) 1138, 1167
MwoI GCNNNNNNNGC 4 cut(s) 416, 698, 812, 1164
NciI CCSGG 1 cut(s) 915
NlaIII CATG 2 cut(s) 609, 1033
NlaIV GGNNCC 4 cut(s) 143, 285, 664, 807
NmeAIII GCCGAG 1 cut(s) 1098
NspV TTCGAA 3 cut(s) 535, 619, 1089
PagI TCATGA 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 1 cut(s) 1167
PctI GAATGC 2 cut(s) 633, 1217
PfeI GAWTC 3 cut(s) 131, 532, 987
PkrI GCNGC 8 cut(s) 311, 517, 585, 754, 995, 998, 1099, 1189
PleI GAGTC 3 cut(s) 87, 674, 1238
PpsI GAGTC 3 cut(s) 87, 674, 1238
Ppu21I YACGTR 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 4 cut(s) 143, 285, 664, 807
PspPI GGNCC 2 cut(s) 437, 964
PsuI RGATCY 3 cut(s) 141, 637, 859
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
SaqAI TTAA 4 cut(s) 149, 272, 864, 933
SatI GCNGC 8 cut(s) 310, 516, 584, 753, 994, 997, 1098, 1188
Sau96I GGNCC 2 cut(s) 437, 964
SchI GAGTC 3 cut(s) 88, 674, 1239
ScrFI CCNGG 2 cut(s) 123, 915
SfaNI GCATC 3 cut(s) 603, 848, 887
SfcI CTRYAG 2 cut(s) 566, 1182
SfuI TTCGAA 3 cut(s) 535, 619, 1089
SinI GGWCC 1 cut(s) 437
SmiI ATTTAAAT 1 cut(s) 150
Sse9I AATT 8 cut(s) 18, 93, 151, 172, 923, 1014, 1265, 1283
SsiI CCGC 7 cut(s) 309, 515, 584, 940, 996, 1187, 1257
SspMI CTAG 2 cut(s) 135, 888
StyD4I CCNGG 2 cut(s) 121, 913
StyI CCWWGG 1 cut(s) 789
SwaI ATTTAAAT 1 cut(s) 150
TaaI ACNGT 3 cut(s) 335, 543, 1225
TaiI ACGT 6 cut(s) 481, 494, 820, 871, 1071, 1198
TaqI TCGA 5 cut(s) 230, 535, 619, 1089, 1161
TasI AATT 8 cut(s) 18, 93, 151, 172, 923, 1014, 1265, 1283
TatI WGTACW 1 cut(s) 706
TauI GCSGC 5 cut(s) 312, 518, 586, 999, 1190
TfiI GAWTC 3 cut(s) 131, 532, 987
Tru1I TTAA 4 cut(s) 149, 272, 864, 933
Tru9I TTAA 4 cut(s) 149, 272, 864, 933
TscAI CASTG 1 cut(s) 898
TseI GCWGC 3 cut(s) 752, 993, 1097
TspDTI ATGAA 3 cut(s) 420, 479, 633
TspGWI ACGGA 5 cut(s) 101, 154, 375, 514, 1057
TspRI CASTG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 4 cut(s) 18, 151, 172, 923
XbaI TCTAGA 1 cut(s) 134
XspI CTAG 2 cut(s) 135, 888
ZraI GACGTC 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.