Rh5DG389300

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010785
Physical Location & Seq
Reverse (-)
60679634 .. 60683146
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG389300.1

Sequence Viewer

Length: 1221 bp
ATGTCACTCTGTTCGCCACCATCGCATTTTCACCTCTCAAACGCCGTCGTTTCGCACTACCACGGCCCCGACCTTATTAGCCTCCCTCTCCAATGTCCCCAAAACCCTAAACCCTCTCCCGAGCCCTCGGCCTCGCTAAAGCTCGCGGCTCCTGTCCGCAACCGCGGCTCCCGCCTCAATTGCCTGAGATCAGATACGCCGATCTCCATTGCGCCGCAGAATGGCGATATCACCGAGCCGAAAATCGACGGCTCCGGCGGCGGAGGCCGTGACGGCGGGGATTCCTCCTCCGGTGGTGGTGGTGGTGGGGGAGGAGAGGGCGGTGGCAATGAGGAGGATGCGGAGGGGGAGGAGTTTGGGCCGTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTGGCGGAGTGGAGCTTCCTTTGGATATGATCGAGGCTGCTAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCAGTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGCACAGAGATAGTCATAGACTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGGAAGGACTTCTGGAATGAGTTTGAGCTGTATGCCGCGGATCTTTTGGTTGGAGTCGTTGTTGACATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGAATTGGAAAACCATCAGTATCACATGGTTTATTTGGACGCGTACAACAAGCTTGTGCGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGGTGTGTTGTATGGTTCAGTTGGTTTTGTATGTGGTATTATTGGACAAGGGATTGCTAACCTGATCATGAATGCTAAACGGAGCATTAAGAAGTCAGAAGAGGACATACCTGTGCCTCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTGTTTCTTGCTTTCTCGTCCAACACTCGTTATCAGATTGTTAATGGACTGGAAGGGCTGGTTGAAGCATCGCCTTTGGCGAAGCGTGTTCCACCAGTTGCAATGGCATTCACTATAGGTGTCCGATTTGCCAACAATATCTATGGTGGTATGCAATTTGTAGATTGGGCCAAATTGAGTGGAGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

406

Amino Acids

43.32

Weight (kDa)

6.55

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 182 - 360 2.5e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AccII CGCG 4 cut(s) 146, 165, 677, 780
AclWI GGATC 2 cut(s) 554, 687
AcoI YGGCCR 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 2 cut(s) 527, 783
AfiI CCNNNNNNNGG 2 cut(s) 221, 481
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 2 cut(s) 821, 1094
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 6 cut(s) 142, 401, 415, 667, 791, 824
AluI AGCT 6 cut(s) 142, 401, 415, 667, 791, 824
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 2 cut(s) 554, 687
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 8 cut(s) 64, 129, 265, 359, 451, 503, 830, 1197
ApeKI GCWGC 3 cut(s) 437, 810, 1016
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 65, 359, 1197
AsuHPI GGTGA 3 cut(s) 23, 223, 394
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 505
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 972, 1004
BbvI GCAGC 3 cut(s) 424, 822, 1003
BccI CCATC 2 cut(s) 28, 760
BceAI ACGGC 6 cut(s) 29, 79, 252, 265, 289, 346
BciT130I CCWGG 1 cut(s) 834
BclI TGATCA 1 cut(s) 945
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 807
BfmI CTRYAG 1 cut(s) 1143
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 9 cut(s) 147, 166, 215, 259, 438, 675, 798, 811, 1017
BlsI GCNGC 9 cut(s) 148, 167, 216, 260, 439, 676, 799, 812, 1018
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 1 cut(s) 834
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 65, 359, 1197
BmiI GGNNCC 5 cut(s) 67, 150, 169, 253, 729
BmrFI CCNGG 1 cut(s) 834
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 2 cut(s) 328, 1106
BmuI ACTGGG 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 61, 126, 163, 675
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 684, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 481
Bse1I ACTGG 4 cut(s) 454, 513, 1083, 1124
Bse3DI GCAATG 4 cut(s) 207, 334, 705, 1137
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 4 cut(s) 61, 126, 163, 675
BseGI GGATG 2 cut(s) 343, 842
BseLI CCNNNNNNNGG 2 cut(s) 221, 481
BseMI GCAATG 4 cut(s) 207, 334, 705, 1137
BseMII CTCAG 2 cut(s) 176, 861
BseNI ACTGG 4 cut(s) 454, 513, 1083, 1124
BseRI GAGGAG 5 cut(s) 277, 327, 347, 365, 990
BseXI GCAGC 3 cut(s) 424, 822, 1003
Bsh1236I CGCG 4 cut(s) 146, 165, 677, 780
BshFI GGCC 8 cut(s) 66, 131, 267, 361, 453, 505, 832, 1199
BshNI GGYRCC 1 cut(s) 727
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 255, 291
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 221, 481
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 3 cut(s) 555, 958, 1136
BsnI GGCC 8 cut(s) 66, 131, 267, 361, 453, 505, 832, 1199
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 6 cut(s) 188, 201, 429, 559, 679, 945
BspANI GGCC 8 cut(s) 66, 131, 267, 361, 453, 505, 832, 1199
BspCNI CTCAG 2 cut(s) 177, 860
BspFNI CGCG 4 cut(s) 146, 165, 677, 780
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 5 cut(s) 67, 150, 169, 253, 729
BspPI GGATC 2 cut(s) 554, 687
BspT107I GGYRCC 1 cut(s) 727
BsrDI GCAATG 4 cut(s) 207, 334, 705, 1137
BsrI ACTGG 4 cut(s) 454, 513, 1083, 1124
BssECI CCNNGG 4 cut(s) 61, 126, 163, 675
BssMI GATC 6 cut(s) 188, 201, 429, 559, 679, 945
Bst2UI CCWGG 1 cut(s) 834
Bst6I CTCTTC 1 cut(s) 975
BstAPI GCANNNNNTGC 2 cut(s) 620, 734
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 144, 403, 555
BstDEI CTNAG 3 cut(s) 185, 441, 847
BstDSI CCRYGG 3 cut(s) 61, 163, 675
BstF5I GGATG 2 cut(s) 343, 842
BstFNI CGCG 4 cut(s) 146, 165, 677, 780
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 6 cut(s) 191, 204, 432, 562, 682, 948
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 6 cut(s) 188, 201, 429, 559, 679, 945
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 1143
BstSNI TACGTA 1 cut(s) 542
BstUI CGCG 4 cut(s) 146, 165, 677, 780
BstV1I GCAGC 3 cut(s) 424, 822, 1003
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 8 cut(s) 66, 131, 267, 361, 453, 505, 832, 1199
BtgI CCRYGG 3 cut(s) 61, 163, 675
BtgZI GCGATG 2 cut(s) 6, 1083
BtsCI GGATG 2 cut(s) 343, 842
BtsIMutI CAGTG 2 cut(s) 506, 855
Cac8I GCNNGC 3 cut(s) 144, 403, 555
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 65, 359, 1197
Cfr42I CCGCGG 2 cut(s) 166, 678
CseI GACGC 2 cut(s) 786, 802
Csp6I GTAC 2 cut(s) 526, 782
CspCI CAANNNNNGTGG 1 cut(s) 1189
CviAII CATG 2 cut(s) 764, 949
CviQI GTAC 2 cut(s) 526, 782
DdeI CTNAG 3 cut(s) 185, 441, 847
DpnI GATC 6 cut(s) 190, 203, 431, 561, 681, 947
DpnII GATC 6 cut(s) 188, 201, 429, 559, 679, 945
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 975
EarI CTCTTC 1 cut(s) 975
EciI GGCGGA 2 cut(s) 276, 420
Eco105I TACGTA 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 767, 952
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 763, 948
FauI CCCGC 2 cut(s) 179, 269
FbaI TGATCA 1 cut(s) 945
Fnu4HI GCNGC 9 cut(s) 147, 166, 215, 259, 438, 675, 798, 811, 1017
FokI GGATG 2 cut(s) 350, 849
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 9 cut(s) 147, 166, 215, 259, 438, 675, 798, 811, 1017
FspBI CTAG 1 cut(s) 807
GlaI GCGC 1 cut(s) 213
GluI GCNGC 9 cut(s) 147, 166, 215, 259, 438, 675, 798, 811, 1017
HaeIII GGCC 8 cut(s) 66, 131, 267, 361, 453, 505, 832, 1199
HapII CCGG 2 cut(s) 255, 291
HgaI GACGC 2 cut(s) 786, 802
HhaI GCGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 767, 952
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 4 cut(s) 281, 602, 693, 843
HpaII CCGG 2 cut(s) 255, 291
HphI GGTGA 3 cut(s) 23, 223, 394
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 5 cut(s) 193, 633, 979, 1065, 1154
Hpy188III TCNNGA 3 cut(s) 119, 652, 949
Hpy8I GTNNAC 1 cut(s) 703
Hpy99I CGWCG 2 cut(s) 50, 251
HpyAV CCTTC 5 cut(s) 382, 464, 573, 637, 1076
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 5 cut(s) 614, 623, 1130, 1183, 1216
HpyF3I CTNAG 3 cut(s) 185, 441, 847
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 2 cut(s) 767, 952
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 945
KspI CCGCGG 2 cut(s) 166, 678
Kzo9I GATC 6 cut(s) 188, 201, 429, 559, 679, 945
LmnI GCTCC 5 cut(s) 154, 173, 257, 412, 963
Lsp1109I GCAGC 3 cut(s) 424, 822, 1003
LweI GCATC 2 cut(s) 328, 1106
MaeI CTAG 1 cut(s) 807
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 2 cut(s) 3, 269
MalI GATC 6 cut(s) 190, 203, 431, 561, 681, 947
MboI GATC 6 cut(s) 188, 201, 429, 559, 679, 945
MboII GAAGA 3 cut(s) 461, 865, 992
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 4 cut(s) 178, 741, 1184, 1202
MluI ACGCGT 1 cut(s) 778
MluNI TGGCCA 1 cut(s) 505
MlyI GAGTC 2 cut(s) 596, 702
MmeI TCCRAC 2 cut(s) 670, 1074
Mox20I TGGCCA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 647
MscI TGGCCA 1 cut(s) 505
MseI TTAA 3 cut(s) 576, 969, 1071
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 1 cut(s) 505
MspA1I CMGCKG 2 cut(s) 165, 677
MspI CCGG 2 cut(s) 255, 291
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 3 cut(s) 555, 958, 1136
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 4 cut(s) 146, 165, 677, 780
NdeII GATC 6 cut(s) 188, 201, 429, 559, 679, 945
NlaIII CATG 2 cut(s) 767, 952
NlaIV GGNNCC 5 cut(s) 67, 150, 169, 253, 729
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 2 cut(s) 3, 269
PagI TCATGA 1 cut(s) 948
PcsI WCGNNNNNNNCGW 1 cut(s) 1106
PctI GAATGC 3 cut(s) 555, 958, 1136
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 2 cut(s) 281, 843
PkrI GCNGC 9 cut(s) 148, 167, 216, 260, 439, 676, 799, 812, 1018
PleI GAGTC 2 cut(s) 596, 701
PpsI GAGTC 2 cut(s) 596, 701
Ppu21I YACGTR 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 5 cut(s) 67, 150, 169, 253, 729
PspPI GGNCC 3 cut(s) 65, 359, 1197
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 2 cut(s) 527, 783
RsaNI GTAC 2 cut(s) 526, 782
RseI CAYNNNNRTG 1 cut(s) 992
SacII CCGCGG 2 cut(s) 166, 678
SaqAI TTAA 3 cut(s) 576, 969, 1071
SatI GCNGC 9 cut(s) 147, 166, 215, 259, 438, 675, 798, 811, 1017
Sau3AI GATC 6 cut(s) 188, 201, 429, 559, 679, 945
Sau96I GGNCC 3 cut(s) 65, 359, 1197
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 596, 702
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 2 cut(s) 328, 1106
SfcI CTRYAG 1 cut(s) 1143
Sfr303I CCGCGG 2 cut(s) 166, 678
SgrBI CCGCGG 2 cut(s) 166, 678
SmiMI CAYNNNNRTG 1 cut(s) 992
SnaBI TACGTA 1 cut(s) 542
Sse9I AATT 4 cut(s) 178, 741, 1184, 1202
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 1 cut(s) 832
TaiI ACGT 1 cut(s) 544
TaqI TCGA 4 cut(s) 246, 432, 547, 739
TasI AATT 4 cut(s) 178, 741, 1184, 1202
TatI WGTACW 1 cut(s) 525
TauI GCSGC 6 cut(s) 149, 168, 217, 261, 677, 800
TfiI GAWTC 2 cut(s) 281, 843
Tru1I TTAA 3 cut(s) 576, 969, 1071
Tru9I TTAA 3 cut(s) 576, 969, 1071
TscAI CASTG 2 cut(s) 513, 855
TseFI GTSAC 2 cut(s) 3, 269
TseI GCWGC 3 cut(s) 437, 810, 1016
Tsp45I GTSAC 2 cut(s) 3, 269
TspDTI ATGAA 3 cut(s) 401, 536, 965
TspGWI ACGGA 1 cut(s) 976
TspRI CASTG 2 cut(s) 513, 855
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 807
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.