pycom11g12630

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010785
Physical Location & Seq
Forward (+)
11525671 .. 11526634
964 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12630.2

Sequence Viewer

Length: 693 bp
ATGTCAGTTTGTTCGCCGCCACCATCGCATGCGCACCTACCAAACGCCGTCGTTTCCAGCTCCACCTCCGAGGCCAGAGCTCCTCTGCAATGTCTCCAAAACCCTAAACCCCATTCCGAACTCGCAAACTCCTTAAAGCTGGTGGCTTTACACCATTCGCCGTCTCGCAACCGCCGTTTCCATCTCAATTGCGTGGGATCAGAGACCATTTCTGTCGCGGAAAAAAATGGTGATTTCACGGAGGCGAAAGCGATGGTTTCTGAGCCGAAAATCGACGGCTTCGGCGGAGGAAATGACGGTGGTGATGGCGGGGATTCATTTGGTGGCGGAGGAAGAGGAGAAGGAGACGGCGGGGGTAAAGAGGAGGGCGGAGAGGGAGAGGAGTTTGGGCCATTGCTGAAGTTTGATGAGGTGATGAAGGAGAGCGAAGCGCGGGGAGTGAAGCTTCCTTTGGACATGGTTGAGGCTGCTAAGACTACTGGGCTTCGGGAAGTGTTCCTTCTCCGCTACTTGGATTTGCAGGGGTCAGTTTGGCCACTGGGTTTTTTGATGAAGTACTGCTCAATGCTACGTAATCGGATGCTGGCTGATCCTTCCTTTCTTTTCAAAGTTGGGACAGAGAGTCATAGATTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGAAAGGATTTCTGGGCGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

231

Amino Acids

24.57

Weight (kDa)

6.18

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 33
AccII CGCG 2 cut(s) 218, 433
AclWI GGATC 2 cut(s) 205, 584
AcoI YGGCCR 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 1 cut(s) 607
AhdI GACNNNNNGTC 1 cut(s) 621
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 4 cut(s) 60, 80, 139, 445
AluI AGCT 4 cut(s) 60, 80, 139, 445
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 4 cut(s) 98, 168, 197, 339
AlwI GGATC 2 cut(s) 205, 584
AoxI GGCC 3 cut(s) 72, 389, 533
ApeKI GCWGC 1 cut(s) 467
AspLEI GCGC 2 cut(s) 34, 433
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 242, 314, 424
BalI TGGCCA 1 cut(s) 535
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 454
BccI CCATC 4 cut(s) 31, 189, 247, 299
BceAI ACGGC 5 cut(s) 32, 145, 159, 292, 364
BcoDI GTCTC 4 cut(s) 98, 168, 197, 339
BisI GCNGC 2 cut(s) 17, 468
BlsI GCNGC 2 cut(s) 18, 469
BmcAI AGTACT 1 cut(s) 557
BmeRI GACNNNNNGTC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 389
BmrI ACTGGG 2 cut(s) 489, 548
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 2 cut(s) 489, 548
BsaAI YACGTR 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 484, 543
Bse3DI GCAATG 2 cut(s) 95, 392
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 2 cut(s) 95, 392
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 484, 543
BseRI GAGGAG 4 cut(s) 72, 351, 377, 395
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 2 cut(s) 218, 433
BshFI GGCC 3 cut(s) 74, 391, 535
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 4 cut(s) 98, 168, 197, 339
BsmBI CGTCTC 2 cut(s) 168, 339
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 3 cut(s) 74, 391, 535
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 197, 589
BspANI GGCC 3 cut(s) 74, 391, 535
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 218, 433
BspPI GGATC 2 cut(s) 205, 584
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 95, 392
BsrI ACTGG 2 cut(s) 484, 543
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 197, 589
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 648
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 30, 585
BstDEI CTNAG 2 cut(s) 261, 471
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 2 cut(s) 218, 433
BstHHI GCGC 2 cut(s) 34, 433
BstKTI GATC 2 cut(s) 200, 592
BstMAI GTCTC 4 cut(s) 98, 168, 197, 339
BstMBI GATC 2 cut(s) 197, 589
BstMWI GCNNNNNNNGC 2 cut(s) 25, 648
BstNSI RCATGY 1 cut(s) 32
BstSNI TACGTA 1 cut(s) 572
BstUI CGCG 2 cut(s) 218, 433
BstV1I GCAGC 1 cut(s) 454
BsuRI GGCC 3 cut(s) 74, 391, 535
BtgZI GCGATG 2 cut(s) 9, 266
BtsCI GGATG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 30, 585
CfoI GCGC 2 cut(s) 34, 433
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 556
CviAII CATG 2 cut(s) 29, 457
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 2 cut(s) 261, 471
DpnI GATC 2 cut(s) 199, 591
DpnII GATC 2 cut(s) 197, 589
DriI GACNNNNNGTC 1 cut(s) 621
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 328
Eam1105I GACNNNNNGTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 328
EciI GGCGGA 3 cut(s) 300, 342, 384
Ecl136II GAGCTC 1 cut(s) 80
Eco105I TACGTA 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 82
Esp3I CGTCTC 2 cut(s) 168, 339
FaeI CATG 2 cut(s) 32, 460
FaiI YATR 3 cut(s) 30, 458, 627
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 628
FatI CATG 2 cut(s) 28, 456
FauI CCCGC 3 cut(s) 302, 344, 426
Fnu4HI GCNGC 2 cut(s) 17, 468
FokI GGATG 1 cut(s) 592
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 17, 468
FspAI RTGCGCAY 1 cut(s) 33
FspI TGCGCA 1 cut(s) 33
GlaI GCGC 2 cut(s) 33, 432
GluI GCNGC 2 cut(s) 17, 468
HaeIII GGCC 3 cut(s) 74, 391, 535
HhaI GCGC 2 cut(s) 34, 433
Hin1II CATG 2 cut(s) 32, 460
Hin6I GCGC 2 cut(s) 32, 431
HinP1I GCGC 2 cut(s) 32, 431
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 3 cut(s) 314, 622, 630
HphI GGTGA 3 cut(s) 242, 314, 424
Hpy188I TCNGA 6 cut(s) 70, 118, 202, 262, 579, 661
Hpy188III TCNNGA 1 cut(s) 488
Hpy99I CGWCG 2 cut(s) 53, 278
HpyAV CCTTC 4 cut(s) 335, 412, 509, 603
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 4 cut(s) 88, 520, 642, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 648
HpyF3I CTNAG 2 cut(s) 261, 471
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 2 cut(s) 32, 460
HspAI GCGC 2 cut(s) 32, 431
Kzo9I GATC 2 cut(s) 197, 589
LmnI GCTCC 2 cut(s) 65, 85
LpnPI CCDG 8 cut(s) 70, 88, 125, 465, 506, 524, 569, 665
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 570
MaeII ACGT 1 cut(s) 571
MalI GATC 2 cut(s) 199, 591
MboI GATC 2 cut(s) 197, 589
MboII GAAGA 1 cut(s) 345
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 535
MlyI GAGTC 1 cut(s) 631
Mox20I TGGCCA 1 cut(s) 535
MscI TGGCCA 1 cut(s) 535
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 535
MunI CAATTG 1 cut(s) 187
MvnI CGCG 2 cut(s) 218, 433
MwoI GCNNNNNNNGC 2 cut(s) 25, 648
NdeII GATC 2 cut(s) 197, 589
NlaIII CATG 2 cut(s) 32, 460
NsbI TGCGCA 1 cut(s) 33
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PfeI GAWTC 2 cut(s) 314, 630
PkrI GCNGC 2 cut(s) 18, 469
PleI GAGTC 1 cut(s) 630
PpsI GAGTC 1 cut(s) 630
Ppu21I YACGTR 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 389
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 2 cut(s) 17, 468
Sau3AI GATC 2 cut(s) 197, 589
Sau96I GGNCC 1 cut(s) 389
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 631
SduI GDGCHC 1 cut(s) 82
SetI ASST 8 cut(s) 39, 62, 68, 82, 141, 414, 447, 574
SfaNI GCATC 1 cut(s) 570
SnaBI TACGTA 1 cut(s) 572
SphI GCATGC 1 cut(s) 32
Sse9I AATT 1 cut(s) 187
SstI GAGCTC 1 cut(s) 82
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 2 cut(s) 314, 630
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 543
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 306, 431, 566
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 543
XceI RCATGY 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.