pycom11g12640

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010785
Physical Location & Seq
Forward (+)
11526691 .. 11529209
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12640.4

Sequence Viewer

Length: 507 bp
ATGTTGGCACCCTATGCTCGGATTGGAAAGCCATCAGTGTCACGAGGTTTATTAGGAAGCGTGCAACAGGCTTGTGCCTCTCTTCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAAATTCACAGTCCAGCAGAGAACAGCCACATACTTCTATAAGGGTGTGTTGTACGGATCAGTTGGCTTTGTATGTGGTCTTATTGGACAAGGAATTGCAACTTGTATATCGATCATGAATGCCAAAAGGAGCGTAAACAAGTCAGAAGGGGACATACCCGTGCCTCCTCTCGTGAAAAGTGCTGCTCTTTGGGGTGTGTTTCTTGCTGTCTCGTCCAACACTCGTTATCAGATCATAAACGGTCTGGAAGGGCTGGTTGAAGCGTCACCGTTGGCAAAGCGTGTCCCGCCTGTTGCAATGGCATTCACTATAGGTGTACGATTCGCCAACAATATCTACGGTGGTATGCAATTCGTAGATTGGGCTAAATTAAGCGGAGTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

169

Amino Acids

17.85

Weight (kDa)

9.69

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 2 cut(s) 407, 495
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 2 cut(s) 173, 438
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 101, 380
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 1 cut(s) 184
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 90, 302
ApoI RAATTY 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 7
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
BauI CACGAG 2 cut(s) 42, 290
BbvI GCAGC 2 cut(s) 102, 289
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 2 cut(s) 91, 303
BlsI GCNGC 2 cut(s) 92, 304
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 114
BseCI ATCGAT 1 cut(s) 230
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 102, 289
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 230
BslFI GGGAC 2 cut(s) 284, 389
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 334
BsmFI GGGAC 2 cut(s) 284, 389
BsmI GAATGC 2 cut(s) 244, 422
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 176, 231, 351
BspACI CCGC 2 cut(s) 407, 495
BspANI GGCC 1 cut(s) 112
BspDI ATCGAT 1 cut(s) 230
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 423
BssMI GATC 3 cut(s) 176, 231, 351
BssSI CACGAG 2 cut(s) 42, 290
Bst2BI CACGAG 2 cut(s) 42, 290
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 4 cut(s) 130, 362, 390, 461
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 3 cut(s) 179, 234, 354
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 3 cut(s) 176, 231, 351
BstMWI GCNNNNNNNGC 2 cut(s) 14, 406
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 102, 289
Bsu15I ATCGAT 1 cut(s) 230
BsuRI GGCC 1 cut(s) 112
BsuTUI ATCGAT 1 cut(s) 230
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 62
CciI TCATGA 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 230
CseI GACGC 2 cut(s) 82, 372
Csp6I GTAC 2 cut(s) 172, 437
CviAII CATG 1 cut(s) 235
CviJI RGCY 8 cut(s) 31, 71, 104, 112, 146, 186, 373, 485
CviKI_1 RGCY 8 cut(s) 31, 71, 104, 112, 146, 186, 373, 485
CviQI GTAC 2 cut(s) 172, 437
DpnI GATC 3 cut(s) 178, 233, 353
DpnII GATC 3 cut(s) 176, 231, 351
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 1 cut(s) 238
FaqI GGGAC 2 cut(s) 284, 389
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 91, 303
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 91, 303
FspBI CTAG 1 cut(s) 87
GluI GCNGC 2 cut(s) 91, 303
HaeIII GGCC 1 cut(s) 112
HgaI GACGC 2 cut(s) 82, 372
Hin1II CATG 1 cut(s) 238
HinfI GANTC 1 cut(s) 441
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 256, 437
Hpy188I TCNGA 3 cut(s) 21, 265, 351
Hpy188III TCNNGA 4 cut(s) 42, 235, 292, 365
Hpy8I GTNNAC 2 cut(s) 256, 437
HpyAV CCTTC 2 cut(s) 260, 362
HpyCH4III ACNGT 4 cut(s) 130, 362, 390, 461
HpyCH4V TGCA 5 cut(s) 64, 218, 416, 469, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 406
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 3 cut(s) 176, 231, 351
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 7 cut(s) 53, 99, 126, 146, 350, 359, 423
Lsp1109I GCAGC 2 cut(s) 102, 289
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 39, 384
MalI GATC 3 cut(s) 178, 233, 353
MboI GATC 3 cut(s) 176, 231, 351
MboII GAAGA 1 cut(s) 74
MluCI AATT 4 cut(s) 122, 213, 470, 488
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 4 cut(s) 38, 88, 294, 297
MseI TTAA 1 cut(s) 491
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 2 cut(s) 244, 422
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 14, 406
NdeII GATC 3 cut(s) 176, 231, 351
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 2 cut(s) 39, 384
PagI TCATGA 1 cut(s) 234
PctI GAATGC 2 cut(s) 244, 422
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 2 cut(s) 92, 304
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 2 cut(s) 173, 438
RsaNI GTAC 2 cut(s) 172, 437
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 2 cut(s) 91, 303
Sau3AI GATC 3 cut(s) 176, 231, 351
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 49, 106, 436
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 4 cut(s) 122, 213, 470, 488
SsiI CCGC 2 cut(s) 407, 495
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 4 cut(s) 130, 362, 390, 461
TaqI TCGA 1 cut(s) 230
TasI AATT 4 cut(s) 122, 213, 470, 488
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 2 cut(s) 39, 384
TseI GCWGC 2 cut(s) 90, 302
Tsp45I GTSAC 2 cut(s) 39, 384
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 122
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.