Rmu_sc0037521.1_g000001

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037521.1
OG0010785
Physical Location & Seq
Forward (+)
1195 .. 2306
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037521.1_g000001.1.cds

Sequence Viewer

Length: 813 bp
atgtcactctgttcgccaccatcgcattttcacctctcaaacgccgtcgtttcgcagtaccacggccccgaccttattagcctccctctccaatgtccccaaaaccctaaaccctctcccgagccctcagcctcgctaaagctcgcggctcctgtccgcaaccgcggcttccgcctcaattgcctgagatcagatacgccgatctccattgcgccgcagaatggcgatatcaccgagccgaaaatcgacggctccggcggcggaggccgtgacggcggggattcctcctccggtggtggtggtgggggaggagagggcggtggcaatgaggaggatgcggagggggaggagtttgggccgttgttgaggtttgatgaggtgatgaaggagactgaagctcgcggagtggagcttcctttggatatggtcgaggctgctaagactactggccttcgtaaagagtttcttctccgctacttggctttacaggggtcagtttggccactgggctttttgatgaagtactgctctatgctacgtaatcgaatgctggctgatccttcctttctgtttaaagttggcacagagatagtcatagactcttgttgtgcaacatttgcagaagttcagaaaagggggaaggacttctggaatgagtttgagttgtatgccgcagatcttttggttggagtcgttgttgacattgctttggttggtatgttggcaccctatgctcgaattggaaaaccatcagtatcacatggtttatttggacgcgtacaacaagcttgtgcagctctccctagcaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

270

Amino Acids

28.83

Weight (kDa)

5.34

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 798
AccB1I GGYRCC 1 cut(s) 724
AccII CGCG 4 cut(s) 146, 165, 402, 777
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 3 cut(s) 59, 524, 780
AfiI CCNNNNNNNGG 2 cut(s) 221, 478
AflIII ACRYGT 1 cut(s) 775
AluBI AGCT 5 cut(s) 142, 398, 412, 788, 797
AluI AGCT 5 cut(s) 142, 398, 412, 788, 797
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 5 cut(s) 64, 265, 356, 448, 500
ApeKI GCWGC 2 cut(s) 434, 794
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 65, 356
AsuHPI GGTGA 3 cut(s) 23, 223, 391
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 502
BanI GGYRCC 1 cut(s) 724
BanII GRGCYC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 421, 806
BccI CCATC 2 cut(s) 28, 757
BceAI ACGGC 6 cut(s) 29, 79, 252, 265, 289, 343
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 798
BglI GCCNNNNNGGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 676
BisI GCNGC 7 cut(s) 147, 166, 215, 259, 435, 672, 795
BlsI GCNGC 7 cut(s) 148, 167, 216, 260, 436, 673, 796
BmcAI AGTACT 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 65, 356
BmiI GGNNCC 4 cut(s) 67, 150, 253, 726
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 61, 163
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 478
Bse1I ACTGG 2 cut(s) 451, 510
Bse3DI GCAATG 3 cut(s) 207, 331, 702
BseDI CCNNGG 2 cut(s) 61, 163
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 221, 478
BseMI GCAATG 3 cut(s) 207, 331, 702
BseMII CTCAG 2 cut(s) 141, 176
BseNI ACTGG 2 cut(s) 451, 510
BseRI GAGGAG 4 cut(s) 277, 324, 344, 362
BseXI GCAGC 2 cut(s) 421, 806
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 4 cut(s) 146, 165, 402, 777
BshFI GGCC 5 cut(s) 66, 267, 358, 450, 502
BshNI GGYRCC 1 cut(s) 724
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 255, 291
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 221, 478
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 5 cut(s) 66, 267, 358, 450, 502
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 188, 201, 556, 676
BspANI GGCC 5 cut(s) 66, 267, 358, 450, 502
BspCNI CTCAG 2 cut(s) 140, 177
BspFNI CGCG 4 cut(s) 146, 165, 402, 777
BspLI GGNNCC 4 cut(s) 67, 150, 253, 726
BspMI ACCTGC 1 cut(s) 798
BspPI GGATC 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 724
BsrDI GCAATG 3 cut(s) 207, 331, 702
BsrI ACTGG 2 cut(s) 451, 510
BssECI CCNNGG 2 cut(s) 61, 163
BssMI GATC 4 cut(s) 188, 201, 556, 676
BstAPI GCANNNNNTGC 2 cut(s) 617, 731
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 3 cut(s) 144, 400, 552
BstDEI CTNAG 3 cut(s) 127, 185, 438
BstDSI CCRYGG 2 cut(s) 61, 163
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 4 cut(s) 146, 165, 402, 777
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 191, 204, 559, 679
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 188, 201, 556, 676
BstSNI TACGTA 1 cut(s) 539
BstUI CGCG 4 cut(s) 146, 165, 402, 777
BstV1I GCAGC 2 cut(s) 421, 806
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 5 cut(s) 66, 267, 358, 450, 502
BtgI CCRYGG 2 cut(s) 61, 163
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 3 cut(s) 144, 400, 552
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 65, 356
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 1 cut(s) 783
Csp6I GTAC 3 cut(s) 58, 523, 779
CviAII CATG 1 cut(s) 761
CviQI GTAC 3 cut(s) 58, 523, 779
DdeI CTNAG 3 cut(s) 127, 185, 438
DpnI GATC 4 cut(s) 190, 203, 558, 678
DpnII GATC 4 cut(s) 188, 201, 556, 676
DraI TTTAAA 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 500
EciI GGCGGA 2 cut(s) 161, 276
Eco105I TACGTA 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 1 cut(s) 764
FaiI YATR 7 cut(s) 425, 533, 596, 669, 719, 732, 762
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 81
FatI CATG 1 cut(s) 760
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 7 cut(s) 147, 166, 215, 259, 435, 672, 795
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 7 cut(s) 147, 166, 215, 259, 435, 672, 795
FspBI CTAG 1 cut(s) 804
GlaI GCGC 1 cut(s) 213
GluI GCNGC 7 cut(s) 147, 166, 215, 259, 435, 672, 795
HaeIII GGCC 5 cut(s) 66, 267, 358, 450, 502
HapII CCGG 2 cut(s) 255, 291
HgaI GACGC 1 cut(s) 783
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 764
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 3 cut(s) 281, 599, 690
HpaII CCGG 2 cut(s) 255, 291
HphI GGTGA 3 cut(s) 23, 223, 391
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 193, 630
Hpy188III TCNNGA 2 cut(s) 119, 649
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 2 cut(s) 50, 251
HpyAV CCTTC 4 cut(s) 379, 461, 570, 634
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 3 cut(s) 611, 620, 794
HpyF3I CTNAG 3 cut(s) 127, 185, 438
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 1 cut(s) 764
HspAI GCGC 1 cut(s) 212
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 4 cut(s) 188, 201, 556, 676
LmnI GCTCC 3 cut(s) 154, 257, 409
Lsp1109I GCAGC 2 cut(s) 421, 806
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 804
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 2 cut(s) 3, 269
MalI GATC 4 cut(s) 190, 203, 558, 678
MboI GATC 4 cut(s) 188, 201, 556, 676
MboII GAAGA 1 cut(s) 458
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 2 cut(s) 178, 738
MluI ACGCGT 1 cut(s) 775
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 2 cut(s) 593, 699
MmeI TCCRAC 1 cut(s) 667
Mox20I TGGCCA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 644
MscI TGGCCA 1 cut(s) 502
MseI TTAA 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 2 cut(s) 255, 291
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 1 cut(s) 552
MvnI CGCG 4 cut(s) 146, 165, 402, 777
NdeII GATC 4 cut(s) 188, 201, 556, 676
NlaIII CATG 1 cut(s) 764
NlaIV GGNNCC 4 cut(s) 67, 150, 253, 726
NmuCI GTSAC 2 cut(s) 3, 269
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 7 cut(s) 148, 167, 216, 260, 436, 673, 796
PleI GAGTC 2 cut(s) 593, 698
PpsI GAGTC 2 cut(s) 593, 698
Ppu21I YACGTR 1 cut(s) 539
PspN4I GGNNCC 4 cut(s) 67, 150, 253, 726
PspPI GGNCC 2 cut(s) 65, 356
PsuI RGATCY 1 cut(s) 676
RsaI GTAC 3 cut(s) 59, 524, 780
RsaNI GTAC 3 cut(s) 58, 523, 779
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 7 cut(s) 147, 166, 215, 259, 435, 672, 795
Sau3AI GATC 4 cut(s) 188, 201, 556, 676
Sau96I GGNCC 2 cut(s) 65, 356
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 2 cut(s) 593, 699
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 1 cut(s) 325
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SnaBI TACGTA 1 cut(s) 539
Sse9I AATT 2 cut(s) 178, 738
SspMI CTAG 1 cut(s) 804
TaiI ACGT 1 cut(s) 541
TaqI TCGA 4 cut(s) 246, 429, 544, 736
TasI AATT 2 cut(s) 178, 738
TatI WGTACW 1 cut(s) 522
TauI GCSGC 5 cut(s) 149, 168, 217, 261, 674
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 2 cut(s) 3, 269
TseI GCWGC 2 cut(s) 434, 794
Tsp45I GTSAC 2 cut(s) 3, 269
TspDTI ATGAA 2 cut(s) 398, 533
TspRI CASTG 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 1 cut(s) 804
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.