Rh5CG399300

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010785
Physical Location & Seq
Reverse (-)
53167763 .. 53171879
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG399300.1

Sequence Viewer

Length: 933 bp
ATGTCACTCTGTTCGCCACCATCGCATTTTCACCTCTCAAACGCCGTCGTTTCGCACTACCACGGCCCCGACCTTATTAACCTCCCTCTCCAATGCCCCCAAAACCCTAAACCCTGTCCCGAGCCCTCAGCCTCGTTAAAGCTCGCGGCTCCTGTCCGCAACCGCGGCTTCCGCCTCAATTGCCTGAGATCAGATACGCCGATCTCCATTGCGCCGCAGAATGGCGATTTCACCGAGCCGAAAATCGACGGCGGCGGCGGAGGCCGTGACGGCGGGGATTCCTCCTCCGGTGGTGGTGGTGGTGGTGGGGAAGGAGAGGGCGGTGGCAATGAGGAGGATGCGGAGGGGGAGGAGTTTGGGCCGTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTCGCGGAGTGGAGCTTCCTTTGGATATGGTCGAGGCTGCTAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCAGTTTGGCCACTGAGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGCACAGAGATAGTCATAGACTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGGAAGGACTTCTGGAATGAGTTTGAGTTGTATGCCGCGGATCTTTTGGTTGGAATCGTTGTTGATATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGAATTGGAAAACCATCAATATCACATGGTTTATTTGGACGCGTACAACAAGCTTGTGCGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGTACAACATCTTGTTATTATTATTATTATTATTATTATTTTTAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

310

Amino Acids

33.59

Weight (kDa)

5.75

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 182 - 301 1.2e-37 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AccII CGCG 5 cut(s) 146, 165, 405, 677, 780
AclWI GGATC 2 cut(s) 554, 687
AcoI YGGCCR 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 3 cut(s) 527, 783, 885
AfiI CCNNNNNNNGG 2 cut(s) 221, 481
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 1 cut(s) 821
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 6 cut(s) 142, 401, 415, 513, 791, 824
AluI AGCT 6 cut(s) 142, 401, 415, 513, 791, 824
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 2 cut(s) 554, 687
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 6 cut(s) 64, 262, 359, 451, 503, 830
ApeKI GCWGC 2 cut(s) 437, 810
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 65, 359
AsuHPI GGTGA 3 cut(s) 23, 223, 394
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 505
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 424, 822
BccI CCATC 2 cut(s) 28, 760
BceAI ACGGC 6 cut(s) 29, 79, 249, 265, 286, 346
BciT130I CCWGG 1 cut(s) 834
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 807
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 9 cut(s) 147, 166, 215, 253, 256, 438, 675, 798, 811
BlsI GCNGC 9 cut(s) 148, 167, 216, 254, 257, 439, 676, 799, 812
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 1 cut(s) 834
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 65, 359
BmiI GGNNCC 3 cut(s) 67, 150, 729
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 542
BsaJI CCNNGG 3 cut(s) 61, 163, 675
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 481
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 2 cut(s) 207, 334
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 61, 163, 675
BseGI GGATG 2 cut(s) 343, 842
BseLI CCNNNNNNNGG 2 cut(s) 221, 481
BseMI GCAATG 2 cut(s) 207, 334
BseMII CTCAG 4 cut(s) 141, 176, 500, 861
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 3 cut(s) 274, 347, 365
BseXI GCAGC 2 cut(s) 424, 822
Bsh1236I CGCG 5 cut(s) 146, 165, 405, 677, 780
BshFI GGCC 6 cut(s) 66, 264, 361, 453, 505, 832
BshNI GGYRCC 1 cut(s) 727
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 221, 481
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 6 cut(s) 66, 264, 361, 453, 505, 832
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 188, 201, 559, 679
BspANI GGCC 6 cut(s) 66, 264, 361, 453, 505, 832
BspCNI CTCAG 4 cut(s) 140, 177, 501, 860
BspFNI CGCG 5 cut(s) 146, 165, 405, 677, 780
BspLI GGNNCC 3 cut(s) 67, 150, 729
BspPI GGATC 2 cut(s) 554, 687
BspT107I GGYRCC 1 cut(s) 727
BsrDI GCAATG 2 cut(s) 207, 334
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 61, 163, 675
BssMI GATC 4 cut(s) 188, 201, 559, 679
Bst2UI CCWGG 1 cut(s) 834
BstAPI GCANNNNNTGC 2 cut(s) 620, 734
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 144, 403, 555
BstDEI CTNAG 5 cut(s) 127, 185, 441, 509, 847
BstDSI CCRYGG 3 cut(s) 61, 163, 675
BstF5I GGATG 2 cut(s) 343, 842
BstFNI CGCG 5 cut(s) 146, 165, 405, 677, 780
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 191, 204, 562, 682
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 4 cut(s) 188, 201, 559, 679
BstMWI GCNNNNNNNGC 9 cut(s) 22, 165, 171, 180, 261, 270, 620, 734, 797
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 1 cut(s) 832
BstSNI TACGTA 1 cut(s) 542
BstUI CGCG 5 cut(s) 146, 165, 405, 677, 780
BstV1I GCAGC 2 cut(s) 424, 822
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 6 cut(s) 66, 264, 361, 453, 505, 832
BtgI CCRYGG 3 cut(s) 61, 163, 675
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 343, 842
BtsIMutI CAGTG 2 cut(s) 506, 855
Cac8I GCNNGC 3 cut(s) 144, 403, 555
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 65, 359
Cfr42I CCGCGG 2 cut(s) 166, 678
CseI GACGC 2 cut(s) 786, 802
Csp6I GTAC 3 cut(s) 526, 782, 884
CviAII CATG 1 cut(s) 764
CviQI GTAC 3 cut(s) 526, 782, 884
DdeI CTNAG 5 cut(s) 127, 185, 441, 509, 847
DpnI GATC 4 cut(s) 190, 203, 561, 681
DpnII GATC 4 cut(s) 188, 201, 559, 679
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 503
EciI GGCGGA 2 cut(s) 161, 273
Eco105I TACGTA 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 1 cut(s) 767
FaiI YATR 8 cut(s) 428, 536, 599, 672, 722, 735, 765, 879
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 763
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 9 cut(s) 147, 166, 215, 253, 256, 438, 675, 798, 811
FokI GGATG 2 cut(s) 350, 849
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 9 cut(s) 147, 166, 215, 253, 256, 438, 675, 798, 811
FspBI CTAG 1 cut(s) 807
GlaI GCGC 1 cut(s) 213
GluI GCNGC 9 cut(s) 147, 166, 215, 253, 256, 438, 675, 798, 811
HaeIII GGCC 6 cut(s) 66, 264, 361, 453, 505, 832
HapII CCGG 1 cut(s) 288
HgaI GACGC 2 cut(s) 786, 802
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 767
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 4 cut(s) 278, 602, 693, 843
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 23, 223, 394
Hpy188I TCNGA 2 cut(s) 193, 633
Hpy188III TCNNGA 2 cut(s) 119, 652
Hpy99I CGWCG 2 cut(s) 50, 251
HpyAV CCTTC 5 cut(s) 305, 382, 464, 573, 637
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 2 cut(s) 614, 623
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 165, 171, 180, 261, 270, 620, 734, 797
HpyF3I CTNAG 5 cut(s) 127, 185, 441, 509, 847
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 1 cut(s) 767
HspAI GCGC 1 cut(s) 212
KspI CCGCGG 2 cut(s) 166, 678
Kzo9I GATC 4 cut(s) 188, 201, 559, 679
LmnI GCTCC 2 cut(s) 154, 412
Lsp1109I GCAGC 2 cut(s) 424, 822
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 807
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 2 cut(s) 3, 266
MalI GATC 4 cut(s) 190, 203, 561, 681
MboI GATC 4 cut(s) 188, 201, 559, 679
MboII GAAGA 2 cut(s) 461, 865
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 2 cut(s) 178, 741
MluI ACGCGT 1 cut(s) 778
MluNI TGGCCA 1 cut(s) 505
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 670
Mox20I TGGCCA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 647
MscI TGGCCA 1 cut(s) 505
MseI TTAA 4 cut(s) 78, 137, 576, 924
Msp20I TGGCCA 1 cut(s) 505
MspA1I CMGCKG 2 cut(s) 165, 677
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 5 cut(s) 146, 165, 405, 677, 780
MwoI GCNNNNNNNGC 9 cut(s) 22, 165, 171, 180, 261, 270, 620, 734, 797
NdeII GATC 4 cut(s) 188, 201, 559, 679
NlaIII CATG 1 cut(s) 767
NlaIV GGNNCC 3 cut(s) 67, 150, 729
NmuCI GTSAC 2 cut(s) 3, 266
PctI GAATGC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 3 cut(s) 278, 693, 843
PkrI GCNGC 9 cut(s) 148, 167, 216, 254, 257, 439, 676, 799, 812
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
Ppu21I YACGTR 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 67, 150, 729
PspPI GGNCC 2 cut(s) 65, 359
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 3 cut(s) 527, 783, 885
RsaNI GTAC 3 cut(s) 526, 782, 884
SacII CCGCGG 2 cut(s) 166, 678
SaqAI TTAA 4 cut(s) 78, 137, 576, 924
SatI GCNGC 9 cut(s) 147, 166, 215, 253, 256, 438, 675, 798, 811
Sau3AI GATC 4 cut(s) 188, 201, 559, 679
Sau96I GGNCC 2 cut(s) 65, 359
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 1 cut(s) 328
Sfr303I CCGCGG 2 cut(s) 166, 678
SgrBI CCGCGG 2 cut(s) 166, 678
SnaBI TACGTA 1 cut(s) 542
Sse9I AATT 2 cut(s) 178, 741
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 1 cut(s) 832
TaiI ACGT 1 cut(s) 544
TaqI TCGA 4 cut(s) 246, 432, 547, 739
TasI AATT 2 cut(s) 178, 741
TatI WGTACW 1 cut(s) 525
TauI GCSGC 7 cut(s) 149, 168, 217, 255, 258, 677, 800
TfiI GAWTC 3 cut(s) 278, 693, 843
Tru1I TTAA 4 cut(s) 78, 137, 576, 924
Tru9I TTAA 4 cut(s) 78, 137, 576, 924
TscAI CASTG 2 cut(s) 513, 855
TseFI GTSAC 2 cut(s) 3, 266
TseI GCWGC 2 cut(s) 437, 810
Tsp45I GTSAC 2 cut(s) 3, 266
TspDTI ATGAA 2 cut(s) 401, 536
TspRI CASTG 2 cut(s) 513, 855
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 807
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.