Rh5BG376200

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010785
Physical Location & Seq
Reverse (-)
59540958 .. 59544461
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG376200.1

Sequence Viewer

Length: 1215 bp
ATGTCACTCTGTTCGCCACCATCGCATTTTCACCTCTCAAACGCCGTCGTTTCGCACTACGACGGCCCCGACCTTATTAACCTCCCTCTCCAATGTCCCCAAAACCCTAAACCCTCTCCCGAGCCCTCGGCCTCGCTAAAGCTCGCGGCTCCTGTCCGCAACCGCGGCTTCCGCCTCAATTGCCTGAGATCAGATACGCCGATCTCCATTGCGCCGCAGAATGGCGATTTCACGGAGCCGAAAATGGACGGCTCCGGCGGCGGAGGGCGTGACGGCGGGGATTCCTCCTCCGGTGGTGGTGGGGGAGGAGAGGGCGGTGGCAATGAGGAGGATGCGGAGGGGGAGGAGTTTGGGCCGTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTCGCGGAGTGGAGCTTCCTTTGGATATGGTCGAGGCTGCAAAGACTACCGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCAGTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGCACAGAGGTAGTCATAGACTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGGAAGGACTTCTGGAATGAGTTTGAGTTGTATGCCGCGGATCTTTTGGTTGGAGTCGTTGTTGACATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGCATTGGAAAACCATCAGTATCACATGGTTTATTTGGACGCGTACAACAAGCTTGTGCGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGGTGTGTTGTATGGTTCAGTTGGTTTTGTATGTGGTATTATTGGACAAGGGATTGCTAACCTGATCATGAATGCCAAACGGAGCATTAGGAAGTCAGAAGAGGACATACCTGTGCCTCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTGTTTCTTGCTTTCTCGTCCAACACTCGTTATCAGATTGTAAATGGACTGGAAGGGCTGGTTGAAGCATCGCCTTTGGCGAAGCGTGTTCCACCAGTTGCAATGGCATTCACTATAGGTGTCCGATTTGCCAACAATATCTATGGTGGTATGCAATTTGTAGATTGGGCCAAATTGAGTGGAGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

404

Amino Acids

43.42

Weight (kDa)

6.47

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 180 - 358 4.9e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AccII CGCG 5 cut(s) 146, 165, 399, 671, 774
AclWI GGATC 2 cut(s) 548, 681
AcoI YGGCCR 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 521, 777
AfiI CCNNNNNNNGG 2 cut(s) 221, 475
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 2 cut(s) 815, 1088
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 5 cut(s) 142, 395, 409, 785, 818
AluI AGCT 5 cut(s) 142, 395, 409, 785, 818
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 2 cut(s) 548, 681
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 7 cut(s) 64, 129, 353, 445, 497, 824, 1191
ApeKI GCWGC 3 cut(s) 431, 804, 1010
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 65, 353, 1191
AsuHPI GGTGA 2 cut(s) 23, 388
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 499
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 966, 998
BbvI GCAGC 3 cut(s) 418, 816, 997
BccI CCATC 2 cut(s) 28, 754
BceAI ACGGC 5 cut(s) 29, 79, 265, 289, 340
BciT130I CCWGG 1 cut(s) 828
BclI TGATCA 1 cut(s) 939
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 1 cut(s) 1137
BisI GCNGC 9 cut(s) 147, 166, 215, 259, 432, 669, 792, 805, 1011
BlsI GCNGC 9 cut(s) 148, 167, 216, 260, 433, 670, 793, 806, 1012
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 828
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 65, 353, 1191
BmiI GGNNCC 5 cut(s) 67, 150, 237, 253, 723
BmrFI CCNGG 1 cut(s) 828
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 322, 1100
BmuI ACTGGG 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 126, 163, 669
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 475
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 3 cut(s) 507, 1077, 1118
Bse3DI GCAATG 4 cut(s) 207, 328, 699, 1131
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 126, 163, 669
BseGI GGATG 2 cut(s) 337, 836
BseLI CCNNNNNNNGG 2 cut(s) 221, 475
BseMI GCAATG 4 cut(s) 207, 328, 699, 1131
BseMII CTCAG 2 cut(s) 176, 855
BseNI ACTGG 3 cut(s) 507, 1077, 1118
BseRI GAGGAG 5 cut(s) 277, 321, 341, 359, 984
BseXI GCAGC 3 cut(s) 418, 816, 997
Bsh1236I CGCG 5 cut(s) 146, 165, 399, 671, 774
BshFI GGCC 7 cut(s) 66, 131, 355, 447, 499, 826, 1193
BshNI GGYRCC 1 cut(s) 721
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 255, 291, 444
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 221, 475
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 3 cut(s) 549, 952, 1130
BsnI GGCC 7 cut(s) 66, 131, 355, 447, 499, 826, 1193
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 188, 201, 553, 673, 939
BspANI GGCC 7 cut(s) 66, 131, 355, 447, 499, 826, 1193
BspCNI CTCAG 2 cut(s) 177, 854
BspFNI CGCG 5 cut(s) 146, 165, 399, 671, 774
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 5 cut(s) 67, 150, 237, 253, 723
BspPI GGATC 2 cut(s) 548, 681
BspT107I GGYRCC 1 cut(s) 721
BsrDI GCAATG 4 cut(s) 207, 328, 699, 1131
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 3 cut(s) 507, 1077, 1118
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 3 cut(s) 126, 163, 669
BssMI GATC 5 cut(s) 188, 201, 553, 673, 939
Bst2UI CCWGG 1 cut(s) 828
Bst6I CTCTTC 1 cut(s) 969
BstAPI GCANNNNNTGC 2 cut(s) 614, 728
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 4 cut(s) 144, 397, 549, 733
BstDEI CTNAG 2 cut(s) 185, 841
BstDSI CCRYGG 2 cut(s) 163, 669
BstF5I GGATG 2 cut(s) 337, 836
BstFNI CGCG 5 cut(s) 146, 165, 399, 671, 774
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 5 cut(s) 191, 204, 556, 676, 942
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 5 cut(s) 188, 201, 553, 673, 939
BstMWI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 258, 614, 728, 791
BstNI CCWGG 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 826
BstSFI CTRYAG 1 cut(s) 1137
BstSNI TACGTA 1 cut(s) 536
BstUI CGCG 5 cut(s) 146, 165, 399, 671, 774
BstV1I GCAGC 3 cut(s) 418, 816, 997
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 7 cut(s) 66, 131, 355, 447, 499, 826, 1193
BtgI CCRYGG 2 cut(s) 163, 669
BtgZI GCGATG 2 cut(s) 6, 1077
BtsCI GGATG 2 cut(s) 337, 836
BtsIMutI CAGTG 2 cut(s) 500, 849
Cac8I GCNNGC 4 cut(s) 144, 397, 549, 733
CciI TCATGA 1 cut(s) 942
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 3 cut(s) 65, 353, 1191
Cfr42I CCGCGG 2 cut(s) 166, 672
CseI GACGC 2 cut(s) 780, 796
Csp6I GTAC 2 cut(s) 520, 776
CspCI CAANNNNNGTGG 1 cut(s) 1183
CviAII CATG 2 cut(s) 758, 943
CviQI GTAC 2 cut(s) 520, 776
DdeI CTNAG 2 cut(s) 185, 841
DpnI GATC 5 cut(s) 190, 203, 555, 675, 941
DpnII GATC 5 cut(s) 188, 201, 553, 673, 939
DraI TTTAAA 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
EciI GGCGGA 2 cut(s) 161, 276
Eco105I TACGTA 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 761, 946
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 757, 942
FauI CCCGC 1 cut(s) 269
FbaI TGATCA 1 cut(s) 939
Fnu4HI GCNGC 9 cut(s) 147, 166, 215, 259, 432, 669, 792, 805, 1011
FokI GGATG 2 cut(s) 344, 843
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 9 cut(s) 147, 166, 215, 259, 432, 669, 792, 805, 1011
FspBI CTAG 1 cut(s) 801
GlaI GCGC 1 cut(s) 213
GluI GCNGC 9 cut(s) 147, 166, 215, 259, 432, 669, 792, 805, 1011
HaeIII GGCC 7 cut(s) 66, 131, 355, 447, 499, 826, 1193
HapII CCGG 3 cut(s) 255, 291, 444
HgaI GACGC 2 cut(s) 780, 796
HhaI GCGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 761, 946
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 4 cut(s) 281, 596, 687, 837
HpaII CCGG 3 cut(s) 255, 291, 444
HphI GGTGA 2 cut(s) 23, 388
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 5 cut(s) 193, 627, 973, 1059, 1148
Hpy188III TCNNGA 3 cut(s) 119, 646, 943
Hpy8I GTNNAC 1 cut(s) 697
Hpy99I CGWCG 2 cut(s) 50, 65
HpyAV CCTTC 5 cut(s) 376, 458, 567, 631, 1070
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 6 cut(s) 434, 608, 617, 1124, 1177, 1210
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 258, 614, 728, 791
HpyF3I CTNAG 2 cut(s) 185, 841
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 2 cut(s) 761, 946
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 939
KspI CCGCGG 2 cut(s) 166, 672
Kzo9I GATC 5 cut(s) 188, 201, 553, 673, 939
LmnI GCTCC 5 cut(s) 154, 235, 257, 406, 957
Lsp1109I GCAGC 3 cut(s) 418, 816, 997
LweI GCATC 2 cut(s) 322, 1100
MaeI CTAG 1 cut(s) 801
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 2 cut(s) 3, 269
MalI GATC 5 cut(s) 190, 203, 555, 675, 941
MboI GATC 5 cut(s) 188, 201, 553, 673, 939
MboII GAAGA 3 cut(s) 455, 859, 986
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 499
MluCI AATT 3 cut(s) 178, 1178, 1196
MluI ACGCGT 1 cut(s) 772
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 2 cut(s) 590, 696
MmeI TCCRAC 2 cut(s) 664, 1068
Mox20I TGGCCA 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 641
MscI TGGCCA 1 cut(s) 499
MseI TTAA 2 cut(s) 78, 570
MslI CAYNNNNRTG 1 cut(s) 986
Msp20I TGGCCA 1 cut(s) 499
MspA1I CMGCKG 2 cut(s) 165, 671
MspI CCGG 3 cut(s) 255, 291, 444
MspR9I CCNGG 1 cut(s) 828
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 3 cut(s) 549, 952, 1130
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 5 cut(s) 146, 165, 399, 671, 774
MwoI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 258, 614, 728, 791
NdeII GATC 5 cut(s) 188, 201, 553, 673, 939
NlaIII CATG 2 cut(s) 761, 946
NlaIV GGNNCC 5 cut(s) 67, 150, 237, 253, 723
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 2 cut(s) 3, 269
PagI TCATGA 1 cut(s) 942
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 1100
PctI GAATGC 3 cut(s) 549, 952, 1130
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 2 cut(s) 281, 837
PkrI GCNGC 9 cut(s) 148, 167, 216, 260, 433, 670, 793, 806, 1012
PleI GAGTC 2 cut(s) 590, 695
PpsI GAGTC 2 cut(s) 590, 695
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 5 cut(s) 67, 150, 237, 253, 723
PspPI GGNCC 3 cut(s) 65, 353, 1191
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 521, 777
RsaNI GTAC 2 cut(s) 520, 776
RseI CAYNNNNRTG 1 cut(s) 986
SacII CCGCGG 2 cut(s) 166, 672
SaqAI TTAA 2 cut(s) 78, 570
SatI GCNGC 9 cut(s) 147, 166, 215, 259, 432, 669, 792, 805, 1011
Sau3AI GATC 5 cut(s) 188, 201, 553, 673, 939
Sau96I GGNCC 3 cut(s) 65, 353, 1191
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 590, 696
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 2 cut(s) 322, 1100
SfcI CTRYAG 1 cut(s) 1137
Sfr303I CCGCGG 2 cut(s) 166, 672
SgrBI CCGCGG 2 cut(s) 166, 672
SmiMI CAYNNNNRTG 1 cut(s) 986
SnaBI TACGTA 1 cut(s) 536
Sse9I AATT 3 cut(s) 178, 1178, 1196
SspMI CTAG 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 826
TaiI ACGT 1 cut(s) 538
TaqI TCGA 2 cut(s) 426, 541
TasI AATT 3 cut(s) 178, 1178, 1196
TatI WGTACW 1 cut(s) 519
TauI GCSGC 6 cut(s) 149, 168, 217, 261, 671, 794
TfiI GAWTC 2 cut(s) 281, 837
Tru1I TTAA 2 cut(s) 78, 570
Tru9I TTAA 2 cut(s) 78, 570
TscAI CASTG 2 cut(s) 507, 849
TseFI GTSAC 2 cut(s) 3, 269
TseI GCWGC 3 cut(s) 431, 804, 1010
Tsp45I GTSAC 2 cut(s) 3, 269
TspDTI ATGAA 3 cut(s) 395, 530, 959
TspGWI ACGGA 2 cut(s) 248, 970
TspRI CASTG 2 cut(s) 507, 849
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 1 cut(s) 801
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.