RLG00000035009

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010785
Physical Location & Seq
Reverse (-)
59092341 .. 59095869
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035009

Sequence Viewer

Length: 1218 bp
ATGTCACTCTGTTCGCCACCATCGCATTTTCACCTCTCAAACGCCGTCGTTTCGCACTACCACGGCCCGGACCTTATTAACCTCCCTCTCCATTGTCCCCAAAACCCTAAACCCTCTCCCGAGCCCGCAGCCTCGTTAAAGCTCGCGGCTCCTGTCCGCAACCGCGGCTTCCGCCTCAATTGCCTGAGATCAGATACGCCGATCTCCATTGCGCCGCAGAATGGCGATTTCACCGAGCCGAAAATCGACGGCGGCGGCGGAGGCCGTGACGGCGGGGATTCCTCCTCCGGTGGTGGTGGTGGTGGAGGAGGAGAGGGCGGTGGCAATGAGGAGGATGCGGAGGGGGAGGAGTTTGGGCCGTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTCGCGGAGTGGAGCTTCCTCTGGATATGCTCGAGGCTGCTAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCACTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGGACGGAGATAGTCATAGATTCTTGTTGTGCGACATTTGCAGAAGTTCAGAAAAGGGGAAAGGACTTCTGGAATGAGTTTGAGTTGTATGCTGCGGATCTTTTGGTTGGAATCGTTGTTGACATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGAATTGGAAAACCATCAATATCACATGGTTTATTTGGACGCGTACAACAAGCTTGTGCGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGGTGTGTTGTATGGTTCAGTTGGTTTTGTATGTGGTATTATTGGGCAAGGGATTGCTAACCTGATCATGAATGCCAAACGGAGCATTAAGAAGTCAGAAGAGGACATACCTGTGCCTCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTGTTTCTTGCTTTCTCGTCCAACACTCGTTATCAGATTGTAAATGGACTGGAAGGGCTGGTTGAAGCATTGCCTTTGGCGAAGCGTGTTCCACCAGTTGCAATGGCATTCACCATAGGTGTCCGATTTGCCAACAATATCTATGGTGGTATGCAATTTGTAGATTGGGCCAGATTGAGTGGAGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

406

Amino Acids

43.54

Weight (kDa)

7.0

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 181 - 359 4.7e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 724
AccII CGCG 4 cut(s) 146, 165, 402, 777
AclWI GGATC 2 cut(s) 551, 684
AcoI YGGCCR 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 524, 780
AfiI CCNNNNNNNGG 3 cut(s) 67, 221, 478
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 2 cut(s) 818, 1091
AjnI CCWGG 1 cut(s) 829
AluBI AGCT 5 cut(s) 142, 398, 412, 788, 821
AluI AGCT 5 cut(s) 142, 398, 412, 788, 821
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 551, 684
Ama87I CYCGRG 2 cut(s) 119, 428
AoxI GGCC 7 cut(s) 64, 262, 356, 448, 500, 827, 1194
ApeKI GCWGC 5 cut(s) 128, 434, 671, 807, 1013
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 4 cut(s) 65, 70, 356, 1194
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 4 cut(s) 23, 223, 391, 1129
AvaI CYCGRG 2 cut(s) 119, 428
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 502
BanI GGYRCC 1 cut(s) 724
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 969, 1001
BbvI GCAGC 5 cut(s) 140, 421, 658, 819, 1000
BccI CCATC 2 cut(s) 28, 757
BceAI ACGGC 6 cut(s) 29, 79, 249, 265, 286, 343
BciT130I CCWGG 1 cut(s) 831
BclI TGATCA 1 cut(s) 942
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 804
BglI GCCNNNNNGGC 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 68, 831
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 2 cut(s) 119, 428
BmgT120I GGNCC 4 cut(s) 65, 70, 356, 1194
BmiI GGNNCC 2 cut(s) 150, 726
BmrFI CCNGG 2 cut(s) 68, 831
BmrI ACTGGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 61, 163
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 221, 478
Bse1I ACTGG 4 cut(s) 451, 510, 1080, 1121
Bse3DI GCAATG 5 cut(s) 207, 331, 702, 1094, 1134
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 61, 163
BseGI GGATG 2 cut(s) 340, 839
BseLI CCNNNNNNNGG 3 cut(s) 67, 221, 478
BseMI GCAATG 5 cut(s) 207, 331, 702, 1094, 1134
BseMII CTCAG 2 cut(s) 176, 858
BseNI ACTGG 4 cut(s) 451, 510, 1080, 1121
BseRI GAGGAG 6 cut(s) 274, 321, 324, 344, 362, 987
BseXI GCAGC 5 cut(s) 140, 421, 658, 819, 1000
Bsh1236I CGCG 4 cut(s) 146, 165, 402, 777
BshFI GGCC 7 cut(s) 66, 264, 358, 450, 502, 829, 1196
BshNI GGYRCC 1 cut(s) 724
BsiHKCI CYCGRG 2 cut(s) 119, 428
BsiSI CCGG 2 cut(s) 68, 288
BslFI GGGAC 2 cut(s) 81, 595
BslI CCNNNNNNNGG 3 cut(s) 67, 221, 478
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 81, 595
BsmI GAATGC 3 cut(s) 552, 955, 1133
BsnI GGCC 7 cut(s) 66, 264, 358, 450, 502, 829, 1196
BsoBI CYCGRG 2 cut(s) 119, 428
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 188, 201, 556, 676, 942
BspANI GGCC 7 cut(s) 66, 264, 358, 450, 502, 829, 1196
BspCNI CTCAG 2 cut(s) 177, 857
BspFNI CGCG 4 cut(s) 146, 165, 402, 777
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 2 cut(s) 150, 726
BspPI GGATC 2 cut(s) 551, 684
BspT107I GGYRCC 1 cut(s) 724
BsrDI GCAATG 5 cut(s) 207, 331, 702, 1094, 1134
BsrI ACTGG 4 cut(s) 451, 510, 1080, 1121
BssECI CCNNGG 2 cut(s) 61, 163
BssMI GATC 5 cut(s) 188, 201, 556, 676, 942
Bst2UI CCWGG 1 cut(s) 831
Bst6I CTCTTC 1 cut(s) 972
BstAPI GCANNNNNTGC 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 4 cut(s) 126, 144, 400, 552
BstDEI CTNAG 3 cut(s) 185, 438, 844
BstDSI CCRYGG 2 cut(s) 61, 163
BstF5I GGATG 2 cut(s) 340, 839
BstFNI CGCG 4 cut(s) 146, 165, 402, 777
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 5 cut(s) 191, 204, 559, 679, 945
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 5 cut(s) 188, 201, 556, 676, 942
BstMWI GCNNNNNNNGC 9 cut(s) 22, 165, 171, 180, 261, 270, 617, 731, 794
BstNI CCWGG 1 cut(s) 831
BstSCI CCNGG 2 cut(s) 66, 829
BstSNI TACGTA 1 cut(s) 539
BstUI CGCG 4 cut(s) 146, 165, 402, 777
BstV1I GCAGC 5 cut(s) 140, 421, 658, 819, 1000
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 7 cut(s) 66, 264, 358, 450, 502, 829, 1196
BtgI CCRYGG 2 cut(s) 61, 163
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 340, 839
BtsIMutI CAGTG 2 cut(s) 503, 852
Cac8I GCNNGC 4 cut(s) 126, 144, 400, 552
CciI TCATGA 1 cut(s) 945
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 4 cut(s) 65, 70, 356, 1194
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 2 cut(s) 783, 799
Csp6I GTAC 2 cut(s) 523, 779
CviAII CATG 2 cut(s) 761, 946
CviQI GTAC 2 cut(s) 523, 779
DdeI CTNAG 3 cut(s) 185, 438, 844
DpnI GATC 5 cut(s) 190, 203, 558, 678, 944
DpnII GATC 5 cut(s) 188, 201, 556, 676, 942
DraI TTTAAA 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 972
EarI CTCTTC 1 cut(s) 972
EciI GGCGGA 2 cut(s) 161, 273
Eco105I TACGTA 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 119, 428
EcoRII CCWGG 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 764, 949
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 81, 595
FatI CATG 2 cut(s) 760, 945
FauI CCCGC 2 cut(s) 133, 266
FbaI TGATCA 1 cut(s) 942
FokI GGATG 2 cut(s) 347, 846
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 1 cut(s) 804
GlaI GCGC 1 cut(s) 213
HaeIII GGCC 7 cut(s) 66, 264, 358, 450, 502, 829, 1196
HapII CCGG 2 cut(s) 68, 288
HgaI GACGC 2 cut(s) 783, 799
HhaI GCGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 764, 949
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 4 cut(s) 278, 599, 690, 840
HpaII CCGG 2 cut(s) 68, 288
HphI GGTGA 4 cut(s) 23, 223, 391, 1129
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 5 cut(s) 193, 630, 976, 1062, 1151
Hpy188III TCNNGA 4 cut(s) 119, 419, 649, 946
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 2 cut(s) 50, 251
HpyAV CCTTC 4 cut(s) 379, 461, 570, 1073
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 4 cut(s) 620, 1127, 1180, 1213
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 165, 171, 180, 261, 270, 617, 731, 794
HpyF3I CTNAG 3 cut(s) 185, 438, 844
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 2 cut(s) 764, 949
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 942
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 5 cut(s) 188, 201, 556, 676, 942
LmnI GCTCC 3 cut(s) 154, 409, 960
Lsp1109I GCAGC 5 cut(s) 140, 421, 658, 819, 1000
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 804
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 3 cut(s) 3, 266, 492
MalI GATC 5 cut(s) 190, 203, 558, 678, 944
MboI GATC 5 cut(s) 188, 201, 556, 676, 942
MboII GAAGA 3 cut(s) 458, 862, 989
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 3 cut(s) 178, 738, 1181
MluI ACGCGT 1 cut(s) 775
MluNI TGGCCA 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 667, 1071
Mox20I TGGCCA 1 cut(s) 502
MscI TGGCCA 1 cut(s) 502
MseI TTAA 4 cut(s) 78, 137, 573, 966
MslI CAYNNNNRTG 1 cut(s) 989
Msp20I TGGCCA 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 2 cut(s) 68, 288
MspR9I CCNGG 2 cut(s) 68, 831
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 3 cut(s) 552, 955, 1133
MvaI CCWGG 1 cut(s) 831
MvnI CGCG 4 cut(s) 146, 165, 402, 777
MwoI GCNNNNNNNGC 9 cut(s) 22, 165, 171, 180, 261, 270, 617, 731, 794
NciI CCSGG 1 cut(s) 68
NdeII GATC 5 cut(s) 188, 201, 556, 676, 942
NlaIII CATG 2 cut(s) 764, 949
NlaIV GGNNCC 2 cut(s) 150, 726
NmuCI GTSAC 3 cut(s) 3, 266, 492
PaeR7I CTCGAG 1 cut(s) 428
PagI TCATGA 1 cut(s) 945
PctI GAATGC 3 cut(s) 552, 955, 1133
PfeI GAWTC 4 cut(s) 278, 599, 690, 840
Ppu21I YACGTR 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 150, 726
PspPI GGNCC 4 cut(s) 65, 70, 356, 1194
PspXI VCTCGAGB 1 cut(s) 428
PsuI RGATCY 1 cut(s) 676
RsaI GTAC 2 cut(s) 524, 780
RsaNI GTAC 2 cut(s) 523, 779
RseI CAYNNNNRTG 1 cut(s) 989
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 4 cut(s) 78, 137, 573, 966
Sau3AI GATC 5 cut(s) 188, 201, 556, 676, 942
Sau96I GGNCC 4 cut(s) 65, 70, 356, 1194
ScaI AGTACT 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 68, 831
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 428
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 989
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SnaBI TACGTA 1 cut(s) 539
Sse9I AATT 3 cut(s) 178, 738, 1181
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 66, 829
TaiI ACGT 1 cut(s) 541
TaqI TCGA 4 cut(s) 246, 429, 544, 736
TasI AATT 3 cut(s) 178, 738, 1181
TatI WGTACW 1 cut(s) 522
TauI GCSGC 6 cut(s) 149, 168, 217, 255, 258, 797
TfiI GAWTC 4 cut(s) 278, 599, 690, 840
Tru1I TTAA 4 cut(s) 78, 137, 573, 966
Tru9I TTAA 4 cut(s) 78, 137, 573, 966
TscAI CASTG 2 cut(s) 510, 852
TseFI GTSAC 3 cut(s) 3, 266, 492
TseI GCWGC 5 cut(s) 128, 434, 671, 807, 1013
Tsp45I GTSAC 3 cut(s) 3, 266, 492
TspDTI ATGAA 3 cut(s) 398, 533, 962
TspGWI ACGGA 2 cut(s) 599, 973
TspRI CASTG 2 cut(s) 510, 852
VpaK11BI GGWCC 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 1 cut(s) 804
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.