Rh5AG365700

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010785
Physical Location & Seq
Reverse (-)
61731437 .. 61735464
4028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG365700.1

Sequence Viewer

Length: 972 bp
ATGTCACTCTGTTCGCCACCATCGCATTTTCACCTCTCAAACGCCGTCGTTTCGCACTACCACGGCCCCGACCTTATTAACCTCCCTCTCCAATGTCCCCAAAACCCTAAACCCTCTCCCGAGCCCTCAGCCTCGCTAAAGCTCGCGGCTCCTGTCCGCAACCGCGGCTTCCGCCTCAATTGCCTGAGATCAGATACGCCGATCTCCATTGCGCCGCAGAATGACGATATCACCGAGCCGAAAATCGACGGCTCCGGTGGAGGCCGTGACGGCGGGGATTCCTCCTCCGGTGGTGGTGGTGGGGGAGGAGAGGGCGGTGGCAATGAGGAGGATGCGGAGGGGGAGGAGTTTGGGCCGTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTCGCGGAGTGGAGCTTCCTTTGGATATGGTCGAGGCTGCTAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCAGTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGCACAGAGATAGTCATAGACTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGGAAGGACTTCTGGAATGAGTTTGAGTTGTATGCCGCGGATCTTTTGGTTGGAATCGTTGTTGATATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGAATTGGAAAACCATCAGTATCACATGGTTTATTTGGACGCGTACAACAAGCTTGTGCGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGGTGTGTTGTATGGTTCAGTTGGTTTTGTATGTGGTATTATTGGACAAGGGATTGCTAACCTGATCATGAATGCCAAACGGTATGTATCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

323

Amino Acids

34.77

Weight (kDa)

6.01

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 180 - 321 1.5e-48 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AccII CGCG 5 cut(s) 146, 165, 399, 671, 774
AclWI GGATC 2 cut(s) 548, 681
AcoI YGGCCR 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 521, 777
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 1 cut(s) 815
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 5 cut(s) 142, 395, 409, 785, 818
AluI AGCT 5 cut(s) 142, 395, 409, 785, 818
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 2 cut(s) 548, 681
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 6 cut(s) 64, 262, 353, 445, 497, 824
ApeKI GCWGC 2 cut(s) 431, 804
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 65, 353
AsuHPI GGTGA 3 cut(s) 23, 223, 388
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 499
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 418, 816
BccI CCATC 2 cut(s) 28, 754
BceAI ACGGC 6 cut(s) 29, 79, 249, 265, 286, 340
BciT130I CCWGG 1 cut(s) 828
BclI TGATCA 1 cut(s) 939
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 801
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 7 cut(s) 147, 166, 215, 432, 669, 792, 805
BlsI GCNGC 7 cut(s) 148, 167, 216, 433, 670, 793, 806
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 828
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 65, 353
BmiI GGNNCC 4 cut(s) 67, 150, 253, 723
BmrFI CCNGG 1 cut(s) 828
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 512
Bpu10I CCTNAGC 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 61, 163, 669
BsaWI WCCGGW 2 cut(s) 254, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 2 cut(s) 448, 507
Bse3DI GCAATG 2 cut(s) 207, 328
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 61, 163, 669
BseGI GGATG 2 cut(s) 337, 836
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 2 cut(s) 207, 328
BseMII CTCAG 3 cut(s) 141, 176, 855
BseNI ACTGG 2 cut(s) 448, 507
BseRI GAGGAG 4 cut(s) 274, 321, 341, 359
BseXI GCAGC 2 cut(s) 418, 816
Bsh1236I CGCG 5 cut(s) 146, 165, 399, 671, 774
BshFI GGCC 6 cut(s) 66, 264, 355, 447, 499, 826
BshNI GGYRCC 1 cut(s) 721
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 255, 288
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 2 cut(s) 549, 952
BsnI GGCC 6 cut(s) 66, 264, 355, 447, 499, 826
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 188, 201, 553, 673, 939
BspANI GGCC 6 cut(s) 66, 264, 355, 447, 499, 826
BspCNI CTCAG 3 cut(s) 140, 177, 854
BspFNI CGCG 5 cut(s) 146, 165, 399, 671, 774
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 4 cut(s) 67, 150, 253, 723
BspPI GGATC 2 cut(s) 548, 681
BspT107I GGYRCC 1 cut(s) 721
BsrDI GCAATG 2 cut(s) 207, 328
BsrI ACTGG 2 cut(s) 448, 507
BssECI CCNNGG 3 cut(s) 61, 163, 669
BssMI GATC 5 cut(s) 188, 201, 553, 673, 939
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 1 cut(s) 957
BstAPI GCANNNNNTGC 2 cut(s) 614, 728
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 3 cut(s) 144, 397, 549
BstDEI CTNAG 4 cut(s) 127, 185, 435, 841
BstDSI CCRYGG 3 cut(s) 61, 163, 669
BstF5I GGATG 2 cut(s) 337, 836
BstFNI CGCG 5 cut(s) 146, 165, 399, 671, 774
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 5 cut(s) 191, 204, 556, 676, 942
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 5 cut(s) 188, 201, 553, 673, 939
BstMWI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 270, 614, 728, 791
BstNI CCWGG 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 826
BstSNI TACGTA 1 cut(s) 536
BstUI CGCG 5 cut(s) 146, 165, 399, 671, 774
BstV1I GCAGC 2 cut(s) 418, 816
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 6 cut(s) 66, 264, 355, 447, 499, 826
BtgI CCRYGG 3 cut(s) 61, 163, 669
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 337, 836
BtsIMutI CAGTG 2 cut(s) 500, 849
Cac8I GCNNGC 3 cut(s) 144, 397, 549
CciI TCATGA 1 cut(s) 942
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 65, 353
Cfr42I CCGCGG 2 cut(s) 166, 672
CseI GACGC 2 cut(s) 780, 796
Csp6I GTAC 2 cut(s) 520, 776
CviAII CATG 2 cut(s) 758, 943
CviQI GTAC 2 cut(s) 520, 776
DdeI CTNAG 4 cut(s) 127, 185, 435, 841
DpnI GATC 5 cut(s) 190, 203, 555, 675, 941
DpnII GATC 5 cut(s) 188, 201, 553, 673, 939
DraI TTTAAA 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 497
EciI GGCGGA 1 cut(s) 161
Eco105I TACGTA 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 761, 946
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 757, 942
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 939
Fnu4HI GCNGC 7 cut(s) 147, 166, 215, 432, 669, 792, 805
FokI GGATG 2 cut(s) 344, 843
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 7 cut(s) 147, 166, 215, 432, 669, 792, 805
FspBI CTAG 1 cut(s) 801
GlaI GCGC 1 cut(s) 213
GluI GCNGC 7 cut(s) 147, 166, 215, 432, 669, 792, 805
HaeIII GGCC 6 cut(s) 66, 264, 355, 447, 499, 826
HapII CCGG 2 cut(s) 255, 288
HgaI GACGC 2 cut(s) 780, 796
HhaI GCGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 761, 946
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 4 cut(s) 278, 596, 687, 837
HpaII CCGG 2 cut(s) 255, 288
HphI GGTGA 3 cut(s) 23, 223, 388
Hpy188I TCNGA 2 cut(s) 193, 627
Hpy188III TCNNGA 3 cut(s) 119, 646, 943
Hpy99I CGWCG 2 cut(s) 50, 251
HpyAV CCTTC 4 cut(s) 376, 458, 567, 631
HpyCH4III ACNGT 1 cut(s) 957
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 2 cut(s) 608, 617
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 270, 614, 728, 791
HpyF3I CTNAG 4 cut(s) 127, 185, 435, 841
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 2 cut(s) 761, 946
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 939
KspI CCGCGG 2 cut(s) 166, 672
Kzo9I GATC 5 cut(s) 188, 201, 553, 673, 939
LmnI GCTCC 3 cut(s) 154, 257, 406
Lsp1109I GCAGC 2 cut(s) 418, 816
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 801
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 2 cut(s) 3, 266
MalI GATC 5 cut(s) 190, 203, 555, 675, 941
MboI GATC 5 cut(s) 188, 201, 553, 673, 939
MboII GAAGA 2 cut(s) 455, 859
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 499
MluCI AATT 2 cut(s) 178, 735
MluI ACGCGT 1 cut(s) 772
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 664
Mox20I TGGCCA 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 641
MscI TGGCCA 1 cut(s) 499
MseI TTAA 2 cut(s) 78, 570
Msp20I TGGCCA 1 cut(s) 499
MspA1I CMGCKG 2 cut(s) 165, 671
MspI CCGG 2 cut(s) 255, 288
MspR9I CCNGG 1 cut(s) 828
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 2 cut(s) 549, 952
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 5 cut(s) 146, 165, 399, 671, 774
MwoI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 270, 614, 728, 791
NdeII GATC 5 cut(s) 188, 201, 553, 673, 939
NlaIII CATG 2 cut(s) 761, 946
NlaIV GGNNCC 4 cut(s) 67, 150, 253, 723
NmuCI GTSAC 2 cut(s) 3, 266
PagI TCATGA 1 cut(s) 942
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 2 cut(s) 549, 952
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 3 cut(s) 278, 687, 837
PkrI GCNGC 7 cut(s) 148, 167, 216, 433, 670, 793, 806
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 4 cut(s) 67, 150, 253, 723
PspPI GGNCC 2 cut(s) 65, 353
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 521, 777
RsaNI GTAC 2 cut(s) 520, 776
SacII CCGCGG 2 cut(s) 166, 672
SaqAI TTAA 2 cut(s) 78, 570
SatI GCNGC 7 cut(s) 147, 166, 215, 432, 669, 792, 805
Sau3AI GATC 5 cut(s) 188, 201, 553, 673, 939
Sau96I GGNCC 2 cut(s) 65, 353
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 1 cut(s) 322
Sfr303I CCGCGG 2 cut(s) 166, 672
SgrBI CCGCGG 2 cut(s) 166, 672
SnaBI TACGTA 1 cut(s) 536
Sse9I AATT 2 cut(s) 178, 735
SspMI CTAG 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 826
TaaI ACNGT 1 cut(s) 957
TaiI ACGT 1 cut(s) 538
TaqI TCGA 4 cut(s) 246, 426, 541, 733
TasI AATT 2 cut(s) 178, 735
TatI WGTACW 1 cut(s) 519
TauI GCSGC 5 cut(s) 149, 168, 217, 671, 794
TfiI GAWTC 3 cut(s) 278, 687, 837
Tru1I TTAA 2 cut(s) 78, 570
Tru9I TTAA 2 cut(s) 78, 570
TscAI CASTG 2 cut(s) 507, 849
TseFI GTSAC 2 cut(s) 3, 266
TseI GCWGC 2 cut(s) 431, 804
Tsp45I GTSAC 2 cut(s) 3, 266
TspDTI ATGAA 3 cut(s) 395, 530, 959
TspRI CASTG 2 cut(s) 507, 849
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 1 cut(s) 801
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.