FvH4_3g30080

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010785
Physical Location & Seq
Forward (+)
23303311 .. 23307315
4005 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30080.t3

Sequence Viewer

Length: 1218 bp
ATGTCACTTTTTTCGCCACCCTCTCACTTTCACCTCCCAAACGCCGTCGTTTCGCACCACGGCTCCGACCTCATTAACCTCCCTCTCCATTCTCCCCAAAACCCTAAACCCTCCTTCGACCCCTTACGCCCATTAAAGCTCGTCGCCTCACACCACTCCCCCATCCACAACCGCCGCGGCTTCCGCCTCACTTCTTGCCTGGGATCAGATTCCGCGTTCCCCATTTCGCCGCAGAATGTCGATCTCACCGAGCCGAAACTCGACGGCGGCGCCGGCGGAGGCCGTGACGGCGGAGATGGAGATTCGTCCTCCGGCGGCGGTGGCAACGAGGAGGATGCGGAGGGGGAGGAGTTCGGGCCTTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTTGCGGAGTGGAGCTTCCTTTGGATATGCTCGAGGCTGCCAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTTCGCTATTTGGCTTTACAGGGCGCAGCTTGGCCGTTGGGGTTTTTGATCAAGTACTGCTCTATGCTACGAAATCGAATGCTGGCTGATCCTTCGTTTTTGTTTAAAGTTGGGACAGAGATAGTCATAGATTCTTGTTGTGCCACCTTTGCGGAAGTTCAGAAGCGGGGAAAGGACTTCTGGAATGAGTTTGAGTTGTATGCTGCGGATCTTTTGGTGGGAATAGTTGTTGACATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGTATTGGAAAACCATCAATATCACATGGTTTATTTGGACAGATGCAACAGGCTTGCGCGTCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGCAGATTCTCCTTGAAGCAGAGGGTAGCCACGTTCTTCTATAAGGGTGTGTTGTATGGATCTGTCGGCTTTGTATGTGGTATTATTGGACAAGGGATTGCTAATACGATCATGAATGCCAAACGGAGCATAAAGAAGTCAGAAGAGGACGTAGCTGTGCCTCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTTTTTCTTGCTATCTCGTCCAACACTCGTTATCAGATCGTAAATGGACTGGAAGGACTGGTTGAAGCATCACCTTTGACAAAGCGTGTTCCACCTATTGCAATGGCGTTCACTATAGGTGTTCGATTTGCCAACAATATCTACGGTGGTATGCAATTTGTAGATTGGGCCAAATTGAGTGGAGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

406

Amino Acids

43.75

Weight (kDa)

6.52

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 181 - 320 3.4e-48 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 269, 724
AccII CGCG 3 cut(s) 177, 215, 794
AclWI GGATC 4 cut(s) 211, 551, 684, 901
AcoI YGGCCR 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 1 cut(s) 524
AgsI TTSAA 3 cut(s) 818, 850, 1091
AjnI CCWGG 2 cut(s) 198, 829
AluBI AGCT 6 cut(s) 139, 398, 412, 497, 821, 989
AluI AGCT 6 cut(s) 139, 398, 412, 497, 821, 989
Alw26I GTCTC 2 cut(s) 383, 801
AlwI GGATC 4 cut(s) 211, 551, 684, 901
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 6 cut(s) 280, 356, 448, 500, 827, 1194
ApeKI GCWGC 5 cut(s) 434, 494, 671, 807, 1013
AspLEI GCGC 3 cut(s) 272, 494, 794
AspS9I GGNCC 2 cut(s) 356, 1194
AsuHPI GGTGA 4 cut(s) 23, 238, 391, 1089
AvaI CYCGRG 1 cut(s) 428
BanI GGYRCC 2 cut(s) 269, 724
BbvI GCAGC 5 cut(s) 421, 506, 658, 819, 1000
BccI CCATC 3 cut(s) 170, 290, 757
BceAI ACGGC 6 cut(s) 29, 76, 267, 280, 304, 487
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 2 cut(s) 200, 831
BclI TGATCA 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 383, 801
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 1140
BfoI RGCGCY 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 288
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 200, 831
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 356, 1194
BmiI GGNNCC 3 cut(s) 64, 271, 726
BmrFI CCNGG 2 cut(s) 200, 831
BmsI GCATC 4 cut(s) 325, 768, 824, 1103
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 58, 175, 199
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 451, 1080, 1089
Bse3DI GCAATG 2 cut(s) 702, 1134
BseBI CCWGG 2 cut(s) 200, 831
BseDI CCNNGG 3 cut(s) 58, 175, 199
BseGI GGATG 3 cut(s) 162, 340, 839
BseMI GCAATG 2 cut(s) 702, 1134
BseNI ACTGG 3 cut(s) 451, 1080, 1089
BseRI GAGGAG 3 cut(s) 344, 362, 987
BseXI GCAGC 5 cut(s) 421, 506, 658, 819, 1000
Bsh1236I CGCG 3 cut(s) 177, 215, 794
BshFI GGCC 6 cut(s) 282, 358, 450, 502, 829, 1196
BshNI GGYRCC 2 cut(s) 269, 724
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 273, 312
BslFI GGGAC 1 cut(s) 595
BsmAI GTCTC 2 cut(s) 383, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 2 cut(s) 552, 955
BsnI GGCC 6 cut(s) 282, 358, 450, 502, 829, 1196
BsoBI CYCGRG 1 cut(s) 428
Bsp143I GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
BspANI GGCC 6 cut(s) 282, 358, 450, 502, 829, 1196
BspFNI CGCG 3 cut(s) 177, 215, 794
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 3 cut(s) 64, 271, 726
BspPI GGATC 4 cut(s) 211, 551, 684, 901
BspT107I GGYRCC 2 cut(s) 269, 724
BsrDI GCAATG 2 cut(s) 702, 1134
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 3 cut(s) 451, 1080, 1089
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 58, 175, 199
BssMI GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 200, 831
Bst4CI ACNGT 1 cut(s) 1172
Bst6I CTCTTC 1 cut(s) 972
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 731
BstC8I GCNNGC 4 cut(s) 274, 400, 552, 790
BstDSI CCRYGG 2 cut(s) 58, 175
BstF5I GGATG 3 cut(s) 162, 340, 839
BstFNI CGCG 3 cut(s) 177, 215, 794
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 3 cut(s) 272, 494, 794
BstKTI GATC 8 cut(s) 206, 244, 519, 559, 679, 896, 945, 1065
BstMAI GTCTC 2 cut(s) 383, 801
BstMBI GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
BstMWI GCNNNNNNNGC 6 cut(s) 183, 273, 288, 321, 617, 731
BstNI CCWGG 2 cut(s) 200, 831
BstSCI CCNGG 2 cut(s) 198, 829
BstSFI CTRYAG 1 cut(s) 1140
BstUI CGCG 3 cut(s) 177, 215, 794
BstV1I GCAGC 5 cut(s) 421, 506, 658, 819, 1000
BstX2I RGATCY 2 cut(s) 676, 893
BstYI RGATCY 2 cut(s) 676, 893
BsuRI GGCC 6 cut(s) 282, 358, 450, 502, 829, 1196
BtgI CCRYGG 2 cut(s) 58, 175
BtsCI GGATG 3 cut(s) 162, 340, 839
Cac8I GCNNGC 4 cut(s) 274, 400, 552, 790
CciI TCATGA 1 cut(s) 945
CfoI GCGC 3 cut(s) 272, 494, 794
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 356, 1194
Cfr42I CCGCGG 1 cut(s) 178
CseI GACGC 2 cut(s) 783, 799
Csp6I GTAC 1 cut(s) 523
CspCI CAANNNNNGTGG 1 cut(s) 1186
CviAII CATG 2 cut(s) 761, 946
CviQI GTAC 1 cut(s) 523
DinI GGCGCC 1 cut(s) 271
DpnI GATC 8 cut(s) 205, 243, 518, 558, 678, 895, 944, 1064
DpnII GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
DraI TTTAAA 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 972
EarI CTCTTC 1 cut(s) 972
EciI GGCGGA 3 cut(s) 173, 291, 306
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 198, 829
EgeI GGCGCC 1 cut(s) 271
EheI GGCGCC 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 2 cut(s) 764, 949
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 595
FatI CATG 2 cut(s) 760, 945
FauI CCCGC 1 cut(s) 627
FbaI TGATCA 1 cut(s) 516
FokI GGATG 3 cut(s) 149, 347, 846
FspBI CTAG 1 cut(s) 804
GlaI GCGC 3 cut(s) 271, 493, 793
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 6 cut(s) 282, 358, 450, 502, 829, 1196
HapII CCGG 2 cut(s) 273, 312
HgaI GACGC 2 cut(s) 783, 799
HhaI GCGC 3 cut(s) 272, 494, 794
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 764, 949
Hin6I GCGC 3 cut(s) 270, 492, 792
HinP1I GCGC 3 cut(s) 270, 492, 792
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 4 cut(s) 209, 302, 599, 840
HpaII CCGG 2 cut(s) 273, 312
HphI GGTGA 4 cut(s) 23, 238, 391, 1089
Hpy166II GTNNAC 2 cut(s) 700, 1137
Hpy188I TCNGA 5 cut(s) 67, 208, 630, 976, 1062
Hpy188III TCNNGA 2 cut(s) 649, 946
Hpy8I GTNNAC 2 cut(s) 700, 1137
Hpy99I CGWCG 3 cut(s) 50, 146, 266
HpyAV CCTTC 5 cut(s) 124, 379, 461, 570, 1073
HpyCH4III ACNGT 1 cut(s) 1172
HpyCH4IV ACGT 2 cut(s) 866, 984
HpyCH4V TGCA 5 cut(s) 781, 837, 1127, 1180, 1213
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 273, 288, 321, 617, 731
HpySE526I ACGT 2 cut(s) 866, 984
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 764, 949
HspAI GCGC 3 cut(s) 270, 492, 792
KasI GGCGCC 1 cut(s) 269
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 516
KspI CCGCGG 1 cut(s) 178
Kzo9I GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
LmnI GCTCC 3 cut(s) 68, 409, 960
Lsp1109I GCAGC 5 cut(s) 421, 506, 658, 819, 1000
LweI GCATC 4 cut(s) 325, 768, 824, 1103
MaeI CTAG 1 cut(s) 804
MaeII ACGT 2 cut(s) 866, 984
MaeIII GTNAC 2 cut(s) 3, 284
MalI GATC 8 cut(s) 205, 243, 518, 558, 678, 895, 944, 1064
MboI GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
MboII GAAGA 4 cut(s) 458, 461, 862, 989
MflI RGATCY 2 cut(s) 676, 893
MluCI AATT 2 cut(s) 1181, 1199
Mly113I GGCGCC 1 cut(s) 270
MmeI TCCRAC 2 cut(s) 90, 1071
MreI CGCCGGCG 1 cut(s) 272
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 3 cut(s) 75, 134, 573
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 2 cut(s) 273, 312
MspR9I CCNGG 2 cut(s) 200, 831
Mva1269I GAATGC 2 cut(s) 552, 955
MvaI CCWGG 2 cut(s) 200, 831
MvnI CGCG 3 cut(s) 177, 215, 794
MwoI GCNNNNNNNGC 6 cut(s) 183, 273, 288, 321, 617, 731
NaeI GCCGGC 1 cut(s) 274
NarI GGCGCC 1 cut(s) 270
NdeII GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 764, 949
NlaIV GGNNCC 3 cut(s) 64, 271, 726
NmuCI GTSAC 2 cut(s) 3, 284
PaeR7I CTCGAG 1 cut(s) 428
PagI TCATGA 1 cut(s) 945
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 2 cut(s) 552, 955
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 4 cut(s) 209, 302, 599, 840
PluTI GGCGCC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 198, 829
PspGI CCWGG 2 cut(s) 198, 829
PspN4I GGNNCC 3 cut(s) 64, 271, 726
PspPI GGNCC 2 cut(s) 356, 1194
PspXI VCTCGAGB 1 cut(s) 428
PsuI RGATCY 2 cut(s) 676, 893
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacII CCGCGG 1 cut(s) 178
SaqAI TTAA 3 cut(s) 75, 134, 573
Sau3AI GATC 8 cut(s) 203, 241, 516, 556, 676, 893, 942, 1062
Sau96I GGNCC 2 cut(s) 356, 1194
ScaI AGTACT 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 200, 831
SfaNI GCATC 4 cut(s) 325, 768, 824, 1103
SfcI CTRYAG 1 cut(s) 1140
SfoI GGCGCC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 428
Sfr303I CCGCGG 1 cut(s) 178
SgrAI CRCCGGYG 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 178
SlaI CTCGAG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 1181, 1199
SspDI GGCGCC 1 cut(s) 269
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 198, 829
TaaI ACNGT 1 cut(s) 1172
TaiI ACGT 2 cut(s) 869, 987
TaqI TCGA 6 cut(s) 117, 240, 261, 429, 544, 1150
TasI AATT 2 cut(s) 1181, 1199
TatI WGTACW 1 cut(s) 522
TauI GCSGC 5 cut(s) 177, 180, 232, 270, 318
TfiI GAWTC 4 cut(s) 209, 302, 599, 840
Tru1I TTAA 3 cut(s) 75, 134, 573
Tru9I TTAA 3 cut(s) 75, 134, 573
TseFI GTSAC 2 cut(s) 3, 284
TseI GCWGC 5 cut(s) 434, 494, 671, 807, 1013
Tsp45I GTSAC 2 cut(s) 3, 284
TspDTI ATGAA 2 cut(s) 398, 962
TspGWI ACGGA 1 cut(s) 973
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 1 cut(s) 804
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.