Prupe.6G117100_v2.0.a1

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010785
Physical Location & Seq
Forward (+)
8561446 .. 8566816
5371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G117100.1

Sequence Viewer

Length: 1281 bp
ATGTCAGTCTGCTCGCCACCGCCATCGCATTCCCACCTCCCAAACGCCGTCGTTTCGAACTCCGTCCCCGAATTTAGAATTCCTCTGCAATGTCCCCAAAACCCTAAACTCCATTTCGAGCTCACAAACTCCTTAAAGCTGGTGGCTTCACGCCATTCCTCGTTTCGTAACCGCCGGTTCTATTTCAATTGCGCGGGATGGGACACGACCTTTGTTGAGGGACAGAATGGTGATTTCACGGTGGCAGAAGCTAGGGTTTCTGAGCCGAGAATAGATGGCTCCGGTGGAGGCAATGATGGTGGTGATGGTGGTGATGGTGGAGATTCATTTGATGGTGGAGATTCATTTGGTGGTGGAGGAAGAGGTGGAGAAGGAGAAGGAGATGGTGGTGATAAGGGTGGGGAGGGAGATGAGTTTGGGCCATTGTTGAAGTTTGATGAGGTGATGAAGGAGAGTAAAGCTCGGGGCGTGAAGCTTCCTCAGGACATGGTTGAGGCTGCGAAGACTACTGGGCTTCGGGAAGTGTTTCTTCAACGCTACTTGGATTTGCAGGGGTCAGTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGAAATCGTATGCTGGCTGATCCTTCCTTTCTTTTTAAAGTTGGGACAGAGATAGTCATAGATTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGAAAGGATTTCTGGGCTGAGTTTGAGTTGTACGCTGCTGATCTTTTGGTTGGAATAGCTGTTGACATTGCTTTGGTTGGCATGTTGGCACCCTATGCTCGAATTGGAAAGCCATCAGTATCACGAGGATTATTTGGACGCTTGCAACATGCTTGTGCGGCCCTTCCTAGCAGTGTCTTTGAAGCTGAAAGGCCGGGATGTAAATTCTCAGTGAAGCAGAGAGTAGCCACATACTTCTATAAGGGTGTGTTGTATGGATCAGTTGGCTTTGTATGTGGTCTTATTGGACAAGGAATTGCAAATTTTATCATGAATGCCAAACGGAGCATAAAGAAGACAGAAGAGGACATACCTGTGCCGCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTTTTTCTTGCTGTCTCGTCCAACACTCGTTACCAGATTGTAAACGGTCTGGAAGGGCTTGTTGAAGCATCACCGTTGGCAAAGCGTGTGCCACCTGTTGCAATGGCATTTACCATAGGTGTACGATTTGCCAACAATATTTACGGCGGTATGCAATTCGTAGATTGGGCTAAATTGAGTGGAGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

427

Amino Acids

45.89

Weight (kDa)

6.95

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 787
AccII CGCG 1 cut(s) 194
AciI CCGC 6 cut(s) 20, 172, 194, 857, 1058, 1236
AclWI GGATC 2 cut(s) 614, 964
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 4 cut(s) 71, 78, 902, 1000
AfaI GTAC 3 cut(s) 587, 731, 1212
AgsI TTSAA 5 cut(s) 187, 430, 533, 881, 1154
AluBI AGCT 7 cut(s) 121, 139, 251, 461, 475, 758, 884
AluI AGCT 7 cut(s) 121, 139, 251, 461, 475, 758, 884
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 1108
AlwI GGATC 2 cut(s) 614, 964
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 4 cut(s) 419, 563, 858, 890
ApeKI GCWGC 3 cut(s) 497, 734, 1076
ApoI RAATTY 4 cut(s) 71, 78, 902, 1000
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 419, 859
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 6 cut(s) 242, 314, 323, 401, 454, 1152
AsuII TTCGAA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 480
BalI TGGCCA 1 cut(s) 565
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 1032, 1064
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 2 cut(s) 509, 1040
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 484, 721, 1063
BccI CCATC 9 cut(s) 31, 192, 269, 290, 299, 308, 326, 377, 820
BceAI ACGGC 2 cut(s) 32, 1249
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 1 cut(s) 1108
BfaI CTAG 2 cut(s) 252, 867
BisI GCNGC 5 cut(s) 498, 735, 858, 1058, 1077
BlsI GCNGC 5 cut(s) 499, 736, 859, 1059, 1078
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 1 cut(s) 894
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 419, 859
BmiI GGNNCC 2 cut(s) 280, 789
BmrFI CCNGG 1 cut(s) 894
BmrI ACTGGG 2 cut(s) 519, 578
BmsI GCATC 1 cut(s) 1166
BmuI ACTGGG 2 cut(s) 519, 578
BpiI GAAGAC 2 cut(s) 509, 1040
BplI GAGNNNNNCTC 2 cut(s) 445, 477
Bpu14I TTCGAA 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 894
BsaWI WCCGGW 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 514, 573
Bse21I CCTNAGG 1 cut(s) 480
Bse3DI GCAATG 4 cut(s) 95, 298, 765, 1197
BseGI GGATG 2 cut(s) 203, 902
BseMI GCAATG 4 cut(s) 95, 298, 765, 1197
BseMII CTCAG 4 cut(s) 252, 494, 708, 921
BseNI ACTGG 2 cut(s) 514, 573
BseXI GCAGC 3 cut(s) 484, 721, 1063
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 4 cut(s) 421, 565, 860, 892
BshNI GGYRCC 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 3 cut(s) 175, 282, 893
BslFI GGGAC 5 cut(s) 50, 78, 215, 234, 658
BsmAI GTCTC 1 cut(s) 1108
BsmFI GGGAC 5 cut(s) 50, 78, 215, 234, 658
BsmI GAATGC 2 cut(s) 28, 1018
BsnI GGCC 4 cut(s) 421, 565, 860, 892
BsoBI CYCGRG 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 619, 739, 956
BspACI CCGC 6 cut(s) 20, 172, 194, 857, 1058, 1236
BspANI GGCC 4 cut(s) 421, 565, 860, 892
BspCNI CTCAG 4 cut(s) 253, 493, 709, 920
BspFNI CGCG 1 cut(s) 194
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 2 cut(s) 280, 789
BspPI GGATC 2 cut(s) 614, 964
BspT104I TTCGAA 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 787
BsrDI GCAATG 4 cut(s) 95, 298, 765, 1197
BsrFI RCCGGY 1 cut(s) 174
BsrI ACTGG 2 cut(s) 514, 573
BssAI RCCGGY 1 cut(s) 174
BssMI GATC 3 cut(s) 619, 739, 956
BssSI CACGAG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 822
Bst4CI ACNGT 3 cut(s) 241, 1136, 1164
Bst6I CTCTTC 2 cut(s) 355, 1035
BstAPI GCANNNNNTGC 2 cut(s) 680, 794
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 14, 615, 842
BstDEI CTNAG 4 cut(s) 261, 480, 717, 907
BstF5I GGATG 2 cut(s) 203, 902
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 622, 742, 959
BstMAI GTCTC 1 cut(s) 1108
BstMBI GATC 3 cut(s) 619, 739, 956
BstMWI GCNNNNNNNGC 3 cut(s) 680, 794, 857
BstNSI RCATGY 2 cut(s) 784, 851
BstSCI CCNGG 1 cut(s) 892
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 484, 721, 1063
BstV2I GAAGAC 2 cut(s) 509, 1040
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 4 cut(s) 421, 565, 860, 892
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 203, 902
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 3 cut(s) 566, 877, 915
Cac8I GCNNGC 3 cut(s) 14, 615, 842
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 419, 859
CseI GACGC 1 cut(s) 846
Csp6I GTAC 3 cut(s) 586, 730, 1211
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 4 cut(s) 487, 781, 848, 1009
CviQI GTAC 3 cut(s) 586, 730, 1211
DdeI CTNAG 4 cut(s) 261, 480, 717, 907
DpnI GATC 3 cut(s) 621, 741, 958
DpnII GATC 3 cut(s) 619, 739, 956
DraI TTTAAA 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 2 cut(s) 355, 1035
EarI CTCTTC 2 cut(s) 355, 1035
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 4 cut(s) 490, 784, 851, 1012
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 5 cut(s) 50, 78, 215, 234, 658
FatI CATG 4 cut(s) 486, 780, 847, 1008
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 5 cut(s) 498, 735, 858, 1058, 1077
FokI GGATG 2 cut(s) 210, 909
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 5 cut(s) 498, 735, 858, 1058, 1077
FspBI CTAG 2 cut(s) 252, 867
GlaI GCGC 1 cut(s) 193
GluI GCNGC 5 cut(s) 498, 735, 858, 1058, 1077
HaeIII GGCC 4 cut(s) 421, 565, 860, 892
HapII CCGG 3 cut(s) 175, 282, 893
HgaI GACGC 1 cut(s) 846
HhaI GCGC 1 cut(s) 194
Hin1II CATG 4 cut(s) 490, 784, 851, 1012
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 3 cut(s) 323, 341, 662
HpaII CCGG 3 cut(s) 175, 282, 893
HphI GGTGA 6 cut(s) 242, 314, 323, 401, 454, 1152
Hpy166II GTNNAC 3 cut(s) 763, 1132, 1211
Hpy188I TCNGA 2 cut(s) 262, 693
Hpy188III TCNNGA 5 cut(s) 482, 518, 822, 1009, 1139
Hpy8I GTNNAC 3 cut(s) 763, 1132, 1211
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 6 cut(s) 365, 371, 442, 633, 872, 1136
HpyCH4III ACNGT 3 cut(s) 241, 1136, 1164
HpyCH4V TGCA 9 cut(s) 88, 550, 674, 683, 844, 998, 1190, 1243, 1276
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 794, 857
HpyF3I CTNAG 4 cut(s) 261, 480, 717, 907
Hsp92II CATG 4 cut(s) 490, 784, 851, 1012
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 3 cut(s) 619, 739, 956
LmnI GCTCC 2 cut(s) 284, 1023
Lsp1109I GCAGC 3 cut(s) 484, 721, 1063
LweI GCATC 1 cut(s) 1166
MaeI CTAG 2 cut(s) 252, 867
MaeIII GTNAC 2 cut(s) 167, 1118
MalI GATC 3 cut(s) 621, 741, 958
MboI GATC 3 cut(s) 619, 739, 956
MboII GAAGA 5 cut(s) 372, 514, 521, 1045, 1052
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 565
MluCI AATT 9 cut(s) 71, 78, 187, 801, 902, 993, 1000, 1244, 1262
MluNI TGGCCA 1 cut(s) 565
MmeI TCCRAC 2 cut(s) 730, 1134
Mox20I TGGCCA 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 565
MseI TTAA 2 cut(s) 134, 636
MslI CAYNNNNRTG 2 cut(s) 852, 1052
Msp20I TGGCCA 1 cut(s) 565
MspI CCGG 3 cut(s) 175, 282, 893
MspR9I CCNGG 1 cut(s) 894
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 2 cut(s) 28, 1018
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 680, 794, 857
NciI CCSGG 1 cut(s) 894
NdeII GATC 3 cut(s) 619, 739, 956
NlaIII CATG 4 cut(s) 490, 784, 851, 1012
NlaIV GGNNCC 2 cut(s) 280, 789
NmeAIII GCCGAG 1 cut(s) 291
NspI RCATGY 2 cut(s) 784, 851
NspV TTCGAA 1 cut(s) 56
PagI TCATGA 1 cut(s) 1008
PctI GAATGC 2 cut(s) 28, 1018
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 3 cut(s) 323, 341, 662
PkrI GCNGC 5 cut(s) 499, 736, 859, 1059, 1078
Psp124BI GAGCTC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 280, 789
PspPI GGNCC 2 cut(s) 419, 859
RsaI GTAC 3 cut(s) 587, 731, 1212
RsaNI GTAC 3 cut(s) 586, 730, 1211
RseI CAYNNNNRTG 2 cut(s) 852, 1052
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 134, 636
SatI GCNGC 5 cut(s) 498, 735, 858, 1058, 1077
Sau3AI GATC 3 cut(s) 619, 739, 956
Sau96I GGNCC 2 cut(s) 419, 859
ScaI AGTACT 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 894
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 1166
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 852, 1052
Sse9I AATT 9 cut(s) 71, 78, 187, 801, 902, 993, 1000, 1244, 1262
SsiI CCGC 6 cut(s) 20, 172, 194, 857, 1058, 1236
SspI AATATT 1 cut(s) 1228
SspMI CTAG 2 cut(s) 252, 867
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 892
TaaI ACNGT 3 cut(s) 241, 1136, 1164
TaqI TCGA 3 cut(s) 56, 117, 799
TasI AATT 9 cut(s) 71, 78, 187, 801, 902, 993, 1000, 1244, 1262
TatI WGTACW 1 cut(s) 585
TauI GCSGC 2 cut(s) 860, 1060
TfiI GAWTC 3 cut(s) 323, 341, 662
Tru1I TTAA 2 cut(s) 134, 636
Tru9I TTAA 2 cut(s) 134, 636
TscAI CASTG 3 cut(s) 573, 877, 915
TseI GCWGC 3 cut(s) 497, 734, 1076
TspDTI ATGAA 5 cut(s) 315, 333, 461, 596, 1025
TspGWI ACGGA 2 cut(s) 52, 1036
TspRI CASTG 3 cut(s) 573, 877, 915
XapI RAATTY 4 cut(s) 71, 78, 902, 1000
XceI RCATGY 2 cut(s) 784, 851
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 252, 867
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.