MD11G1154900.v1.1

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010785
Physical Location & Seq
Forward (+)
14857474 .. 14862157
4684 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1154900.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGTCAGTTTGCTCGCCGCCACCATCGCATGCGCACCTGCCAAACGCCGTCGTTTCCAGCTCCGCCTCCGAGGCCAGAGCTCCTCTGCAATGTCTCCAAAATCCTAAACCCCATTCCGAACTCGCAAACTCGTTAAAGCTGGTGGCTTTACACCATTCGCCGTCTCGCAACCGCCGTTTCCATCTCAATTGCGCGGGATCAGAGACCATTTCTGTCGCGGAAAAAAATGGTGATTTCACGGAGGCGAAAGCGATGGTTTCTGAGCCGAAAATCGACGGCTCCGGCGGAGGAAATGACAGTGGTGATGGCGGCGATTCATTTGGTGGCAGAGGAAGAGGAGAAGGAGACGGCGGGGGTAAAGAGGAGGGCGGAGAGGGAGAGGAGTTTGGGCCATTGCTGAAGTTTGATGAGGTGATGAAGGAGAGCGAAGCGCGGGGAGTGAAGCTTCCTTTGGACATGCTTGAGGCTGCTAAGACTACTGGGCTTCGGGAGGTGTTCCTTCTCCGCTACTTGGATTTGCAGGGTTCAGTTTGGCCACTGGGTTTTTTGATCAAGTACTGCTCAATGCTACGTAACCGGATGCTGGCTGATCCTTCCTTTCTTTTCAAAGTTGGGACAGAGATAGTCATAGATTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGAAAGGATTTCTGGGCGGAGTTTGAGTTGTATGCTGCTGATCTTTTGGTTGGAATAGTGGTTGACATTGCTTTGGTTGGCATGTTGGCACCCTATGCTCGGATTGGAAAGCCATCAGTGTCACGAGGTTTATTAGGAAGCGTGCAACAGGCTTGTGCCTCTCTTCCTAGCAGCGTCTTTGAAGCTGAAAGGCCGGGATGTAAATTCACAGTCCAGCAGAGAACAGCCACATACTTCTATAAGGGTGTGTTGTACGGATCAGTTGGCTTTGTATGCGGTCTTATTGGACAAGGAATTGCAAATATGATCATGAATGCCAAAAGGAGCGTAAACAAGTCAGAAGGGGACATACCCGTGCCTCCTCTCGTGAAAAGTGCCGCTCTTTGGGGTGTATTTCTTGCTGTCTCGTCCAACACTCGTTATCAGATCGTAAACGGTCTGGAAGGGCTGGTTGAAGCATCACCGTTGGCAAAACGTGTCCCGCCTGTTGCGATGGCATTCACTATAGGCGTACGATTCGCCAACAATATCTACGGTGGTATGCAGTTCGTAGATTGGGCTAAATTAAGCGGAGTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

417

Amino Acids

44.42

Weight (kDa)

7.0

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 192 - 370 5.1e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 45
Acc16I TGCGCA 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 757
AccBSI CCGCTC 1 cut(s) 1049
AccII CGCG 3 cut(s) 194, 218, 433
AclWI GGATC 3 cut(s) 205, 584, 934
AcoI YGGCCR 1 cut(s) 533
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 3 cut(s) 557, 923, 1182
AfiI CCNNNNNNNGG 4 cut(s) 511, 583, 768, 1053
AflIII ACRYGT 1 cut(s) 1144
AgsI TTSAA 3 cut(s) 607, 851, 1124
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 5 cut(s) 60, 80, 139, 445, 854
AluI AGCT 5 cut(s) 60, 80, 139, 445, 854
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 5 cut(s) 98, 168, 197, 339, 1078
AlwI GGATC 3 cut(s) 205, 584, 934
AoxI GGCC 4 cut(s) 72, 389, 533, 860
ApeKI GCWGC 3 cut(s) 467, 704, 840
ApoI RAATTY 1 cut(s) 872
AspLEI GCGC 3 cut(s) 34, 194, 433
AspS9I GGNCC 1 cut(s) 389
AsuC2I CCSGG 1 cut(s) 864
AsuHPI GGTGA 4 cut(s) 242, 314, 424, 1122
BalI TGGCCA 1 cut(s) 535
BanI GGYRCC 1 cut(s) 757
BanII GRGCYC 1 cut(s) 82
BarI GAAGNNNNNNTAC 2 cut(s) 1002, 1034
BauI CACGAG 2 cut(s) 792, 1034
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 454, 691, 852
BccI CCATC 6 cut(s) 31, 189, 247, 299, 790, 1156
BceAI ACGGC 5 cut(s) 32, 145, 159, 292, 364
BclI TGATCA 2 cut(s) 549, 975
BcnI CCSGG 1 cut(s) 864
BcoDI GTCTC 5 cut(s) 98, 168, 197, 339, 1078
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 1 cut(s) 1173
BfuAI ACCTGC 1 cut(s) 45
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 6 cut(s) 17, 310, 468, 705, 841, 1047
BlsI GCNGC 6 cut(s) 18, 311, 469, 706, 842, 1048
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 864
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 280, 759
BmrFI CCNGG 1 cut(s) 864
BmrI ACTGGG 2 cut(s) 489, 548
BmsI GCATC 2 cut(s) 570, 1136
BmuI ACTGGG 2 cut(s) 489, 548
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 864
BsaAI YACGTR 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 576
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 4 cut(s) 511, 583, 768, 1053
Bse1I ACTGG 2 cut(s) 484, 543
Bse3DI GCAATG 3 cut(s) 95, 392, 735
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 585, 872
BseLI CCNNNNNNNGG 4 cut(s) 511, 583, 768, 1053
BseMI GCAATG 3 cut(s) 95, 392, 735
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 484, 543
BseRI GAGGAG 5 cut(s) 72, 351, 377, 395, 1020
BseXI GCAGC 3 cut(s) 454, 691, 852
Bsh1236I CGCG 3 cut(s) 194, 218, 433
BshFI GGCC 4 cut(s) 74, 391, 535, 862
BshNI GGYRCC 1 cut(s) 757
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 3 cut(s) 282, 577, 863
BsiWI CGTACG 1 cut(s) 1180
BslFI GGGAC 3 cut(s) 628, 1028, 1133
BslI CCNNNNNNNGG 4 cut(s) 511, 583, 768, 1053
BsmAI GTCTC 5 cut(s) 98, 168, 197, 339, 1078
BsmBI CGTCTC 2 cut(s) 168, 339
BsmFI GGGAC 3 cut(s) 628, 1028, 1133
BsmI GAATGC 2 cut(s) 988, 1166
BsnI GGCC 4 cut(s) 74, 391, 535, 862
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
BspANI GGCC 4 cut(s) 74, 391, 535, 862
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 3 cut(s) 194, 218, 433
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 2 cut(s) 280, 759
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 3 cut(s) 205, 584, 934
BspT107I GGYRCC 1 cut(s) 757
BspTNI GGTCTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 1049
BsrDI GCAATG 3 cut(s) 95, 392, 735
BsrI ACTGG 2 cut(s) 484, 543
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
BssSI CACGAG 2 cut(s) 792, 1034
Bst2BI CACGAG 2 cut(s) 792, 1034
Bst4CI ACNGT 5 cut(s) 299, 880, 1106, 1134, 1205
Bst6I CTCTTC 2 cut(s) 328, 837
BstAPI GCANNNNNTGC 2 cut(s) 650, 764
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 4 cut(s) 14, 30, 585, 812
BstDEI CTNAG 2 cut(s) 261, 471
BstF5I GGATG 2 cut(s) 585, 872
BstFNI CGCG 3 cut(s) 194, 218, 433
BstHHI GCGC 3 cut(s) 34, 194, 433
BstKTI GATC 7 cut(s) 200, 552, 592, 712, 929, 978, 1098
BstMAI GTCTC 5 cut(s) 98, 168, 197, 339, 1078
BstMBI GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
BstMWI GCNNNNNNNGC 5 cut(s) 25, 71, 650, 764, 942
BstNSI RCATGY 3 cut(s) 32, 460, 754
BstSCI CCNGG 1 cut(s) 862
BstSFI CTRYAG 1 cut(s) 1173
BstSNI TACGTA 1 cut(s) 572
BstUI CGCG 3 cut(s) 194, 218, 433
BstV1I GCAGC 3 cut(s) 454, 691, 852
BsuRI GGCC 4 cut(s) 74, 391, 535, 862
BtgZI GCGATG 3 cut(s) 9, 266, 1175
BtsCI GGATG 2 cut(s) 585, 872
BtsIMutI CAGTG 3 cut(s) 304, 536, 792
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 4 cut(s) 14, 30, 585, 812
CciI TCATGA 1 cut(s) 978
CfoI GCGC 3 cut(s) 34, 194, 433
Cfr13I GGNCC 1 cut(s) 389
CseI GACGC 1 cut(s) 832
Csp6I GTAC 3 cut(s) 556, 922, 1181
CviAII CATG 4 cut(s) 29, 457, 751, 979
CviQI GTAC 3 cut(s) 556, 922, 1181
DdeI CTNAG 2 cut(s) 261, 471
DpnI GATC 7 cut(s) 199, 551, 591, 711, 928, 977, 1097
DpnII GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 328, 837
EarI CTCTTC 2 cut(s) 328, 837
EciI GGCGGA 4 cut(s) 52, 300, 384, 701
Ecl136II GAGCTC 1 cut(s) 80
Eco105I TACGTA 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 82
Esp3I CGTCTC 2 cut(s) 168, 339
FaeI CATG 4 cut(s) 32, 460, 754, 982
FaqI GGGAC 3 cut(s) 628, 1028, 1133
FatI CATG 4 cut(s) 28, 456, 750, 978
FauI CCCGC 4 cut(s) 187, 344, 426, 1158
FbaI TGATCA 2 cut(s) 549, 975
Fnu4HI GCNGC 6 cut(s) 17, 310, 468, 705, 841, 1047
FokI GGATG 2 cut(s) 592, 879
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 6 cut(s) 17, 310, 468, 705, 841, 1047
FspAI RTGCGCAY 1 cut(s) 33
FspBI CTAG 1 cut(s) 837
FspI TGCGCA 1 cut(s) 33
GlaI GCGC 3 cut(s) 33, 193, 432
GluI GCNGC 6 cut(s) 17, 310, 468, 705, 841, 1047
HaeIII GGCC 4 cut(s) 74, 391, 535, 862
HapII CCGG 3 cut(s) 282, 577, 863
HgaI GACGC 1 cut(s) 832
HhaI GCGC 3 cut(s) 34, 194, 433
Hin1II CATG 4 cut(s) 32, 460, 754, 982
Hin6I GCGC 3 cut(s) 32, 192, 431
HinP1I GCGC 3 cut(s) 32, 192, 431
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 3 cut(s) 314, 632, 1185
HpaII CCGG 3 cut(s) 282, 577, 863
HphI GGTGA 4 cut(s) 242, 314, 424, 1122
Hpy166II GTNNAC 3 cut(s) 733, 1000, 1102
Hpy188I TCNGA 8 cut(s) 70, 118, 202, 262, 663, 771, 1009, 1095
Hpy188III TCNNGA 5 cut(s) 488, 792, 979, 1036, 1109
Hpy8I GTNNAC 3 cut(s) 733, 1000, 1102
Hpy99I CGWCG 2 cut(s) 53, 278
HpyAV CCTTC 6 cut(s) 335, 412, 509, 603, 1004, 1106
HpyCH4III ACNGT 5 cut(s) 299, 880, 1106, 1134, 1205
HpyCH4IV ACGT 2 cut(s) 571, 1144
HpyCH4V TGCA 8 cut(s) 88, 520, 644, 653, 814, 968, 1213, 1246
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 71, 650, 764, 942
HpyF3I CTNAG 2 cut(s) 261, 471
HpySE526I ACGT 2 cut(s) 571, 1144
Hsp92II CATG 4 cut(s) 32, 460, 754, 982
HspAI GCGC 3 cut(s) 32, 192, 431
Ksp22I TGATCA 2 cut(s) 549, 975
Kzo9I GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
LmnI GCTCC 4 cut(s) 65, 85, 284, 993
Lsp1109I GCAGC 3 cut(s) 454, 691, 852
LweI GCATC 2 cut(s) 570, 1136
MaeI CTAG 1 cut(s) 837
MaeII ACGT 2 cut(s) 571, 1144
MaeIII GTNAC 2 cut(s) 572, 789
MalI GATC 7 cut(s) 199, 551, 591, 711, 928, 977, 1097
MbiI CCGCTC 1 cut(s) 1049
MboI GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
MboII GAAGA 2 cut(s) 345, 824
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 4 cut(s) 187, 872, 963, 1232
MluNI TGGCCA 1 cut(s) 535
MmeI TCCRAC 2 cut(s) 700, 1104
Mox20I TGGCCA 1 cut(s) 535
MscI TGGCCA 1 cut(s) 535
MseI TTAA 2 cut(s) 134, 1235
MslI CAYNNNNRTG 1 cut(s) 1022
Msp20I TGGCCA 1 cut(s) 535
MspI CCGG 3 cut(s) 282, 577, 863
MspR9I CCNGG 1 cut(s) 864
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 2 cut(s) 988, 1166
MvnI CGCG 3 cut(s) 194, 218, 433
MwoI GCNNNNNNNGC 5 cut(s) 25, 71, 650, 764, 942
NciI CCSGG 1 cut(s) 864
NdeII GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
NlaIII CATG 4 cut(s) 32, 460, 754, 982
NlaIV GGNNCC 2 cut(s) 280, 759
NmuCI GTSAC 1 cut(s) 789
NsbI TGCGCA 1 cut(s) 33
NspI RCATGY 3 cut(s) 32, 460, 754
PaeI GCATGC 1 cut(s) 32
PagI TCATGA 1 cut(s) 978
PaqCI CACCTGC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PctI GAATGC 2 cut(s) 988, 1166
PfeI GAWTC 3 cut(s) 314, 632, 1185
Pfl23II CGTACG 1 cut(s) 1180
PkrI GCNGC 6 cut(s) 18, 311, 469, 706, 842, 1048
Ppu21I YACGTR 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 82
PspLI CGTACG 1 cut(s) 1180
PspN4I GGNNCC 2 cut(s) 280, 759
PspPI GGNCC 1 cut(s) 389
RsaI GTAC 3 cut(s) 557, 923, 1182
RsaNI GTAC 3 cut(s) 556, 922, 1181
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 134, 1235
SatI GCNGC 6 cut(s) 17, 310, 468, 705, 841, 1047
Sau3AI GATC 7 cut(s) 197, 549, 589, 709, 926, 975, 1095
Sau96I GGNCC 1 cut(s) 389
ScaI AGTACT 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 864
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 2 cut(s) 570, 1136
SfcI CTRYAG 1 cut(s) 1173
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SnaBI TACGTA 1 cut(s) 572
SphI GCATGC 1 cut(s) 32
Sse9I AATT 4 cut(s) 187, 872, 963, 1232
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 862
TaaI ACNGT 5 cut(s) 299, 880, 1106, 1134, 1205
TaiI ACGT 2 cut(s) 574, 1147
TaqI TCGA 1 cut(s) 273
TasI AATT 4 cut(s) 187, 872, 963, 1232
TatI WGTACW 1 cut(s) 555
TauI GCSGC 3 cut(s) 19, 312, 1049
TfiI GAWTC 3 cut(s) 314, 632, 1185
Tru1I TTAA 2 cut(s) 134, 1235
Tru9I TTAA 2 cut(s) 134, 1235
TscAI CASTG 3 cut(s) 304, 543, 792
TseFI GTSAC 1 cut(s) 789
TseI GCWGC 3 cut(s) 467, 704, 840
Tsp45I GTSAC 1 cut(s) 789
TspDTI ATGAA 3 cut(s) 306, 431, 995
TspGWI ACGGA 2 cut(s) 254, 939
TspRI CASTG 3 cut(s) 304, 543, 792
XapI RAATTY 1 cut(s) 872
XceI RCATGY 3 cut(s) 32, 460, 754
XspI CTAG 1 cut(s) 837
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.