Rroxscaffold_1G00024560

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010785
Physical Location & Seq
Forward (+)
30516793 .. 30520748
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024560.1

Sequence Viewer

Length: 1221 bp
ATGTCACTTTGTTCGCCACCATCGCATTTTCACCTCTCAAACGCCGTCGTTTCGCACTACCACGGCCCCGACCTTATTAACCTCCCTCTCCATTGTCCCCAAAACCCTAAACCCTCTCCCGAGCCCGCAGCCTCGTTAAAGCTCGCCGCTCCTGTCCGCAACCGCGGCTTCCGCCTCAATTGCCTGAGATCAGATACGCCGATCTCCATTGCGCCGCAGAATGGCGATTTCACCGAGCCGAAAATCGACGGCTCCGGCGGAGGCCGTGACGGCGGGGATTCCTCCTCCGGGGGTGGTGGTGGTGGTGGTGGAGGAGAGGGCGGTGGCAATGAGGGGGATGCGGAGGGGGAGGAGTTTGGGCCGTTGTTGAGGTTTGATGAGGTGATGAAGGAGACTGAAGCTCGCGGAGTGGAGCTTCCTCTGGATATGCTCGAGGCTGCTAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCACTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGGACGGAGATAGTCATAGATTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGAAAGGACTTCTGGAGTGAGTTTGAGTTGTATGCCGCGGATCTTTTGGTTGGAATCGTTGTTGATATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGAATTGGAAAACCATCAGTATCACATGGTTTATTTGGACGCATACAACAAGCTTGTGTGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGGTGTGTTGTATGGTTCAGTTGGTTTTGTATGTGGTATTATTGGACAAGGGATTGCTAACCTGATCATGAATGCCAAACGGAGCATTAAGAAGTCAGAAGAGGACATACCTGTGCCTCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTGTTTCTTGCTTTCTCGTCCAACACTCGTTATCAGATTGTAAATGGACTGGAAGGGCTGGTTGAAGCATCGCCTTTGGCGAAGCGTGTTCCACCAGTTGCAATGGCATTCACTATAGGTGTCCGATTTGCCAACAATATCTATGGTGGTATGCAATTTGTAGATTGGGCCAAATTGAGTGGAGTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

406

Amino Acids

43.51

Weight (kDa)

7.55

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 182 - 360 1.6e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 149
AccII CGCG 3 cut(s) 165, 405, 677
AclWI GGATC 2 cut(s) 554, 687
AcoI YGGCCR 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 3 cut(s) 221, 288, 481
AgsI TTSAA 2 cut(s) 821, 1094
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 5 cut(s) 142, 401, 415, 791, 824
AluI AGCT 5 cut(s) 142, 401, 415, 791, 824
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 2 cut(s) 554, 687
Ama87I CYCGRG 2 cut(s) 119, 431
AoxI GGCC 7 cut(s) 64, 262, 359, 451, 503, 830, 1197
ApeKI GCWGC 4 cut(s) 128, 437, 810, 1016
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 65, 359, 1197
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 23, 223, 394
AvaI CYCGRG 2 cut(s) 119, 431
BalI TGGCCA 1 cut(s) 505
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 972, 1004
BbvI GCAGC 4 cut(s) 140, 424, 822, 1003
BccI CCATC 2 cut(s) 28, 760
BceAI ACGGC 6 cut(s) 29, 79, 249, 265, 286, 346
BciT130I CCWGG 1 cut(s) 834
BclI TGATCA 1 cut(s) 945
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 807
BfmI CTRYAG 1 cut(s) 1143
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 8 cut(s) 129, 147, 166, 215, 438, 675, 811, 1017
BlsI GCNGC 8 cut(s) 130, 148, 167, 216, 439, 676, 812, 1018
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 2 cut(s) 289, 834
BmeT110I CYCGRG 2 cut(s) 119, 431
BmgT120I GGNCC 3 cut(s) 65, 359, 1197
BmiI GGNNCC 3 cut(s) 67, 253, 729
BmrFI CCNGG 2 cut(s) 289, 834
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 2 cut(s) 328, 1106
BmuI ACTGGG 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 673
BpuMI CCSGG 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 61, 163, 288, 675
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 288, 481
Bse1I ACTGG 4 cut(s) 454, 513, 1083, 1124
Bse3DI GCAATG 3 cut(s) 207, 334, 1137
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 4 cut(s) 61, 163, 288, 675
BseGI GGATG 2 cut(s) 343, 842
BseLI CCNNNNNNNGG 3 cut(s) 221, 288, 481
BseMI GCAATG 3 cut(s) 207, 334, 1137
BseMII CTCAG 2 cut(s) 176, 861
BseNI ACTGG 4 cut(s) 454, 513, 1083, 1124
BseRI GAGGAG 4 cut(s) 274, 327, 365, 990
BseXI GCAGC 4 cut(s) 140, 424, 822, 1003
Bsh1236I CGCG 3 cut(s) 165, 405, 677
BshFI GGCC 7 cut(s) 66, 264, 361, 453, 505, 832, 1199
BshNI GGYRCC 1 cut(s) 727
BsiHKCI CYCGRG 2 cut(s) 119, 431
BsiSI CCGG 2 cut(s) 255, 288
BslFI GGGAC 2 cut(s) 81, 598
BslI CCNNNNNNNGG 3 cut(s) 221, 288, 481
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 81, 598
BsmI GAATGC 3 cut(s) 555, 958, 1136
BsnI GGCC 7 cut(s) 66, 264, 361, 453, 505, 832, 1199
BsoBI CYCGRG 2 cut(s) 119, 431
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 188, 201, 559, 679, 945
BspANI GGCC 7 cut(s) 66, 264, 361, 453, 505, 832, 1199
BspCNI CTCAG 2 cut(s) 177, 860
BspFNI CGCG 3 cut(s) 165, 405, 677
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 3 cut(s) 67, 253, 729
BspPI GGATC 2 cut(s) 554, 687
BspT107I GGYRCC 1 cut(s) 727
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 3 cut(s) 207, 334, 1137
BsrI ACTGG 4 cut(s) 454, 513, 1083, 1124
BssECI CCNNGG 4 cut(s) 61, 163, 288, 675
BssMI GATC 5 cut(s) 188, 201, 559, 679, 945
Bst2UI CCWGG 1 cut(s) 834
Bst6I CTCTTC 1 cut(s) 975
BstAPI GCANNNNNTGC 2 cut(s) 620, 734
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 4 cut(s) 126, 144, 403, 555
BstDEI CTNAG 3 cut(s) 185, 441, 847
BstDSI CCRYGG 3 cut(s) 61, 163, 675
BstF5I GGATG 2 cut(s) 343, 842
BstFNI CGCG 3 cut(s) 165, 405, 677
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 5 cut(s) 191, 204, 562, 682, 948
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 5 cut(s) 188, 201, 559, 679, 945
BstMWI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 270, 620, 734, 797
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 2 cut(s) 287, 832
BstSFI CTRYAG 1 cut(s) 1143
BstSNI TACGTA 1 cut(s) 542
BstUI CGCG 3 cut(s) 165, 405, 677
BstV1I GCAGC 4 cut(s) 140, 424, 822, 1003
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 7 cut(s) 66, 264, 361, 453, 505, 832, 1199
BtgI CCRYGG 3 cut(s) 61, 163, 675
BtgZI GCGATG 2 cut(s) 6, 1083
BtsCI GGATG 2 cut(s) 343, 842
BtsIMutI CAGTG 2 cut(s) 506, 855
Cac8I GCNNGC 4 cut(s) 126, 144, 403, 555
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 65, 359, 1197
Cfr42I CCGCGG 2 cut(s) 166, 678
CseI GACGC 2 cut(s) 786, 802
Csp6I GTAC 1 cut(s) 526
CspCI CAANNNNNGTGG 1 cut(s) 1189
CviAII CATG 2 cut(s) 764, 949
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 3 cut(s) 185, 441, 847
DpnI GATC 5 cut(s) 190, 203, 561, 681, 947
DpnII GATC 5 cut(s) 188, 201, 559, 679, 945
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 975
EarI CTCTTC 1 cut(s) 975
EciI GGCGGA 2 cut(s) 161, 273
Eco105I TACGTA 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 2 cut(s) 119, 431
EcoRII CCWGG 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 767, 952
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 2 cut(s) 81, 598
FatI CATG 2 cut(s) 763, 948
FauI CCCGC 2 cut(s) 133, 266
FbaI TGATCA 1 cut(s) 945
Fnu4HI GCNGC 8 cut(s) 129, 147, 166, 215, 438, 675, 811, 1017
FokI GGATG 2 cut(s) 350, 849
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 8 cut(s) 129, 147, 166, 215, 438, 675, 811, 1017
FspBI CTAG 1 cut(s) 807
GlaI GCGC 1 cut(s) 213
GluI GCNGC 8 cut(s) 129, 147, 166, 215, 438, 675, 811, 1017
GsuI CTGGAG 1 cut(s) 673
HaeIII GGCC 7 cut(s) 66, 264, 361, 453, 505, 832, 1199
HapII CCGG 2 cut(s) 255, 288
HgaI GACGC 2 cut(s) 786, 802
HhaI GCGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 767, 952
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 4 cut(s) 278, 602, 693, 843
HpaII CCGG 2 cut(s) 255, 288
HphI GGTGA 3 cut(s) 23, 223, 394
Hpy188I TCNGA 5 cut(s) 193, 633, 979, 1065, 1154
Hpy188III TCNNGA 4 cut(s) 119, 422, 652, 949
Hpy99I CGWCG 2 cut(s) 50, 251
HpyAV CCTTC 4 cut(s) 382, 464, 573, 1076
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 5 cut(s) 614, 623, 1130, 1183, 1216
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 270, 620, 734, 797
HpyF3I CTNAG 3 cut(s) 185, 441, 847
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 2 cut(s) 767, 952
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 945
KspI CCGCGG 2 cut(s) 166, 678
Kzo9I GATC 5 cut(s) 188, 201, 559, 679, 945
LmnI GCTCC 4 cut(s) 154, 257, 412, 963
Lsp1109I GCAGC 4 cut(s) 140, 424, 822, 1003
LweI GCATC 2 cut(s) 328, 1106
MaeI CTAG 1 cut(s) 807
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 3 cut(s) 3, 266, 495
MalI GATC 5 cut(s) 190, 203, 561, 681, 947
MbiI CCGCTC 1 cut(s) 149
MboI GATC 5 cut(s) 188, 201, 559, 679, 945
MboII GAAGA 3 cut(s) 461, 865, 992
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 4 cut(s) 178, 741, 1184, 1202
MluNI TGGCCA 1 cut(s) 505
MmeI TCCRAC 2 cut(s) 670, 1074
Mox20I TGGCCA 1 cut(s) 505
MscI TGGCCA 1 cut(s) 505
MseI TTAA 4 cut(s) 78, 137, 576, 969
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 1 cut(s) 505
MspA1I CMGCKG 2 cut(s) 165, 677
MspI CCGG 2 cut(s) 255, 288
MspR9I CCNGG 2 cut(s) 289, 834
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 3 cut(s) 555, 958, 1136
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 3 cut(s) 165, 405, 677
MwoI GCNNNNNNNGC 8 cut(s) 22, 165, 171, 180, 270, 620, 734, 797
NciI CCSGG 1 cut(s) 289
NdeII GATC 5 cut(s) 188, 201, 559, 679, 945
NlaIII CATG 2 cut(s) 767, 952
NlaIV GGNNCC 3 cut(s) 67, 253, 729
NmuCI GTSAC 3 cut(s) 3, 266, 495
PaeR7I CTCGAG 1 cut(s) 431
PagI TCATGA 1 cut(s) 948
PcsI WCGNNNNNNNCGW 1 cut(s) 1106
PctI GAATGC 3 cut(s) 555, 958, 1136
PfeI GAWTC 4 cut(s) 278, 602, 693, 843
PkrI GCNGC 8 cut(s) 130, 148, 167, 216, 439, 676, 812, 1018
Ppu21I YACGTR 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 67, 253, 729
PspPI GGNCC 3 cut(s) 65, 359, 1197
PspXI VCTCGAGB 1 cut(s) 431
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 992
SacII CCGCGG 2 cut(s) 166, 678
SaqAI TTAA 4 cut(s) 78, 137, 576, 969
SatI GCNGC 8 cut(s) 129, 147, 166, 215, 438, 675, 811, 1017
Sau3AI GATC 5 cut(s) 188, 201, 559, 679, 945
Sau96I GGNCC 3 cut(s) 65, 359, 1197
ScaI AGTACT 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 289, 834
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 2 cut(s) 328, 1106
SfcI CTRYAG 1 cut(s) 1143
Sfr274I CTCGAG 1 cut(s) 431
Sfr303I CCGCGG 2 cut(s) 166, 678
SgrBI CCGCGG 2 cut(s) 166, 678
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SnaBI TACGTA 1 cut(s) 542
Sse9I AATT 4 cut(s) 178, 741, 1184, 1202
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 287, 832
TaiI ACGT 1 cut(s) 544
TaqI TCGA 4 cut(s) 246, 432, 547, 739
TasI AATT 4 cut(s) 178, 741, 1184, 1202
TatI WGTACW 1 cut(s) 525
TauI GCSGC 4 cut(s) 149, 168, 217, 677
TfiI GAWTC 4 cut(s) 278, 602, 693, 843
Tru1I TTAA 4 cut(s) 78, 137, 576, 969
Tru9I TTAA 4 cut(s) 78, 137, 576, 969
TscAI CASTG 2 cut(s) 513, 855
TseFI GTSAC 3 cut(s) 3, 266, 495
TseI GCWGC 4 cut(s) 128, 437, 810, 1016
Tsp45I GTSAC 3 cut(s) 3, 266, 495
TspDTI ATGAA 3 cut(s) 401, 536, 965
TspGWI ACGGA 2 cut(s) 602, 976
TspRI CASTG 2 cut(s) 513, 855
XhoI CTCGAG 1 cut(s) 431
XspI CTAG 1 cut(s) 807
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.