Rw5G034300

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010785
Physical Location & Seq
Reverse (-)
59030766 .. 59034198
3433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034300.1

Sequence Viewer

Length: 837 bp
ATGAAGGAGACTGAAGCTCGCGGAGTGGAGCTTCCTTTGGATATGGTCGAGGCTGCTAAGACTACTGGCCTTCGTAAAGAGTTTCTTCTCCGCTACTTGGCTTTACAGGGGTCAGTTTGGCCACTGGGCTTTTTGATGAAGTACTGCTCTATGCTACGTAATCGAATGCTGGCTGATCCTTCCTTTCTGTTTAAAGTTGGCACAGAGATAGTCATAGACTCTTGTTGTGCAACATTTGCAGAAGTTCAGAAAAGGGGGAAGGACTTCTGGAATGAGTTTGAGCTGTATGCCGCGGATCTTTTGGTTGGAGTCGTTGTTGACATTGCTTTGGTTGGTATGTTGGCACCCTATGCTCGAATTGGAAAAACATCAGTATCACATGGTTTATTTGGACACGTACAACAAGCTTGTGCGGCTCTCCCTAGCAGCGTCTTTGAAGCTGAAAGGCCAGGATGTAGATTCTCAGTGAAGCAGAGAGTAGCCTCATTCTTCTATAAGGGTGTGTTGTATGGTTCAGTTGGTTTTGTATGTGGTATTATTGGACAAGGGATTGCTAACCTGATCATGAATGCCAAACGGAGCATTAAGAAGTCAGAAGAGGACATACCTGTGCCTCCTCTTGTGAAAAGTGCTGCTCTTTGGGGTGTGTTTCTTGCTTTCTCGTCCAACACTCGTTATCAGATTGTAAATGGACTGGAAGGGCTGGTTGAAGCATCGCCTTTGGCGAAGCGTGTTCCACCAGTTGCAATGGCATTCACTATAGGTGTCCGATTTGCCAACAATATCTATGGTGGTATGCAATTTGTAGATTGGGCCAAATTGAGTGGAGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

278

Amino Acids

30.42

Weight (kDa)

9.1

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 54 - 232 4.9e-67 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22790
fragaria_vesca FvH4_3g30080 FvH4_3g30080 FvH4_3g30080
malus_domestica MD03G1132600.v1.1 MD11G1154900.v1.1
prunus_persica Prupe.6G117100_v2.0.a1
pyrus_communis pycom11g12630 pycom11g12640
rosa_chinensis RchiOBHm_Chr5g0055771
rosa_laevigata RLG00000035009
rosa_multiflora Rmu_sc0007355.1_g000014 Rmu_sc0037521.1_g000001
rosa_roxburghii Rroxscaffold_1G00024560
rosa_rugosa Rorug05G0294800
rosa_samantha Rh5AG365700 Rh5BG376200 Rh5CG399300 Rh5DG389300
rosa_wichuraiana Rw5G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccII CGCG 2 cut(s) 21, 293
AciI CCGC 5 cut(s) 21, 91, 291, 293, 413
AclWI GGATC 2 cut(s) 170, 303
AcoI YGGCCR 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 2 cut(s) 143, 399
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 2 cut(s) 437, 710
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 5 cut(s) 17, 31, 283, 407, 440
AluI AGCT 5 cut(s) 17, 31, 283, 407, 440
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 170, 303
AoxI GGCC 4 cut(s) 67, 119, 446, 813
ApeKI GCWGC 3 cut(s) 53, 426, 632
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 813
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BalI TGGCCA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 343
BarI GAAGNNNNNNTAC 2 cut(s) 588, 620
BbvI GCAGC 3 cut(s) 40, 438, 619
BciT130I CCWGG 1 cut(s) 450
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 759
BisI GCNGC 5 cut(s) 54, 291, 414, 427, 633
BlsI GCNGC 5 cut(s) 55, 292, 415, 428, 634
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 722
BmuI ACTGGG 1 cut(s) 134
BsaAI YACGTR 2 cut(s) 158, 397
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 4 cut(s) 70, 129, 699, 740
Bse3DI GCAATG 2 cut(s) 321, 753
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 458
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 2 cut(s) 321, 753
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 4 cut(s) 70, 129, 699, 740
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 3 cut(s) 40, 438, 619
Bsh1236I CGCG 2 cut(s) 21, 293
BshFI GGCC 4 cut(s) 69, 121, 448, 815
BshNI GGYRCC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 3 cut(s) 171, 574, 752
BsnI GGCC 4 cut(s) 69, 121, 448, 815
Bsp143I GATC 3 cut(s) 175, 295, 561
BspACI CCGC 5 cut(s) 21, 91, 291, 293, 413
BspANI GGCC 4 cut(s) 69, 121, 448, 815
BspCNI CTCAG 1 cut(s) 476
BspFNI CGCG 2 cut(s) 21, 293
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 2 cut(s) 170, 303
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 321, 753
BsrI ACTGG 4 cut(s) 70, 129, 699, 740
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 3 cut(s) 175, 295, 561
Bst2UI CCWGG 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 591
BstAPI GCANNNNNTGC 2 cut(s) 236, 350
BstBAI YACGTR 2 cut(s) 158, 397
BstC8I GCNNGC 2 cut(s) 19, 171
BstDEI CTNAG 2 cut(s) 57, 463
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 458
BstFNI CGCG 2 cut(s) 21, 293
BstKTI GATC 3 cut(s) 178, 298, 564
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 3 cut(s) 175, 295, 561
BstMWI GCNNNNNNNGC 3 cut(s) 236, 350, 413
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 759
BstSNI TACGTA 1 cut(s) 158
BstUI CGCG 2 cut(s) 21, 293
BstV1I GCAGC 3 cut(s) 40, 438, 619
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 4 cut(s) 69, 121, 448, 815
BtgI CCRYGG 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 458
BtsIMutI CAGTG 2 cut(s) 122, 471
Cac8I GCNNGC 2 cut(s) 19, 171
CciI TCATGA 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 813
Cfr42I CCGCGG 1 cut(s) 294
CseI GACGC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 142, 398
CspCI CAANNNNNGTGG 1 cut(s) 805
CviAII CATG 2 cut(s) 380, 565
CviQI GTAC 2 cut(s) 142, 398
DdeI CTNAG 2 cut(s) 57, 463
DpnI GATC 3 cut(s) 177, 297, 563
DpnII GATC 3 cut(s) 175, 295, 561
DraI TTTAAA 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco105I TACGTA 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 448
FaeI CATG 2 cut(s) 383, 568
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 2 cut(s) 379, 564
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 54, 291, 414, 427, 633
FokI GGATG 1 cut(s) 465
Fsp4HI GCNGC 5 cut(s) 54, 291, 414, 427, 633
FspBI CTAG 1 cut(s) 423
GluI GCNGC 5 cut(s) 54, 291, 414, 427, 633
HaeIII GGCC 4 cut(s) 69, 121, 448, 815
HgaI GACGC 1 cut(s) 418
Hin1II CATG 2 cut(s) 383, 568
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 3 cut(s) 218, 309, 459
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 249, 595, 681, 770
Hpy188III TCNNGA 2 cut(s) 268, 565
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 4 cut(s) 80, 189, 253, 692
HpyCH4IV ACGT 2 cut(s) 157, 396
HpyCH4V TGCA 5 cut(s) 230, 239, 746, 799, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 350, 413
HpyF3I CTNAG 2 cut(s) 57, 463
HpySE526I ACGT 2 cut(s) 157, 396
Hsp92II CATG 2 cut(s) 383, 568
Ksp22I TGATCA 1 cut(s) 561
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 3 cut(s) 175, 295, 561
LmnI GCTCC 2 cut(s) 28, 579
Lsp1109I GCAGC 3 cut(s) 40, 438, 619
LweI GCATC 1 cut(s) 722
MaeI CTAG 1 cut(s) 423
MaeII ACGT 2 cut(s) 157, 396
MalI GATC 3 cut(s) 177, 297, 563
MboI GATC 3 cut(s) 175, 295, 561
MboII GAAGA 3 cut(s) 77, 481, 608
MflI RGATCY 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 3 cut(s) 357, 800, 818
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 2 cut(s) 212, 318
MmeI TCCRAC 2 cut(s) 286, 690
MnlI CCTC 5 cut(s) 43, 493, 592, 624, 627
Mox20I TGGCCA 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 263
MscI TGGCCA 1 cut(s) 121
MseI TTAA 2 cut(s) 192, 585
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 450
Mva1269I GAATGC 3 cut(s) 171, 574, 752
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 2 cut(s) 21, 293
MwoI GCNNNNNNNGC 3 cut(s) 236, 350, 413
NdeII GATC 3 cut(s) 175, 295, 561
NlaIII CATG 2 cut(s) 383, 568
NlaIV GGNNCC 1 cut(s) 345
PagI TCATGA 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PctI GAATGC 3 cut(s) 171, 574, 752
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 459
PkrI GCNGC 5 cut(s) 55, 292, 415, 428, 634
PleI GAGTC 2 cut(s) 212, 317
PpsI GAGTC 2 cut(s) 212, 317
Ppu21I YACGTR 2 cut(s) 158, 397
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 813
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 143, 399
RsaNI GTAC 2 cut(s) 142, 398
RseI CAYNNNNRTG 1 cut(s) 608
SacII CCGCGG 1 cut(s) 294
SaqAI TTAA 2 cut(s) 192, 585
SatI GCNGC 5 cut(s) 54, 291, 414, 427, 633
Sau3AI GATC 3 cut(s) 175, 295, 561
Sau96I GGNCC 1 cut(s) 813
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 2 cut(s) 212, 318
ScrFI CCNGG 1 cut(s) 450
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 1 cut(s) 759
Sfr303I CCGCGG 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 608
SnaBI TACGTA 1 cut(s) 158
Sse9I AATT 3 cut(s) 357, 800, 818
SsiI CCGC 5 cut(s) 21, 91, 291, 293, 413
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 448
TaiI ACGT 2 cut(s) 160, 399
TaqI TCGA 3 cut(s) 48, 163, 355
TasI AATT 3 cut(s) 357, 800, 818
TatI WGTACW 1 cut(s) 141
TauI GCSGC 2 cut(s) 293, 416
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 2 cut(s) 192, 585
Tru9I TTAA 2 cut(s) 192, 585
TscAI CASTG 2 cut(s) 129, 471
TseI GCWGC 3 cut(s) 53, 426, 632
TspDTI ATGAA 3 cut(s) 17, 152, 581
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 2 cut(s) 129, 471
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.