AT5G22920

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005998
Physical Location & Seq
Forward (+)
7664871 .. 7667288
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22920.2

Sequence Viewer

Length: 876 bp
ATGGATATGGGTTTCCATGAAAATGAGCAAAATCAAGAATTTGCGAATCTAATGGAGATTGGATCTGGGCATTACGGGTGTTCACATTATAGAAGACGATGCAAGATTAGAGCACCATGTTGTGATGAGATTTTTGATTGCAGACATTGCCACAACGAAGCTAAGGATTCTCTTCATATTGAACAGCATCATAGACATGAGCTTCCTCGACATGAAGTTTCAAAGGTCATATGCTCGCTTTGTGAGACAGAACAAGACGTTCAGCAAAACTGCTCCAATTGTGGTGTATGTATGGGGAAGTACTTCTGTTCAAAATGCAAGTTCTTCGACGATGATCTTTCCAAGAAGCAATATCACTGTGATGAGTGTGGGATTTGCAGGACCGGAGGAGAAGAAAACTTTTTCCATTGCAAAAGATGCCGATGTTGCTACTCCAAAATTATGGAGGACAAACACCAATGTGTTGAAGGCGCTATGCATCACAATTGCCCGGTTTGTTTTGAGTATCTGTTTGATTCAACAAGAGATATCACTGTCCTACGATGTGGTCACACTATGCATCTAGAATGCACGAAAGATATGGGGCTACATAACCGATACACATGCCCTGTATGCTCCAAATCCATATGTGACATGTCTAATCTGTGGAAGAAACTTGATGAAGAGGTTGCTGCATACCCAATGCCAAAGATGTATGAAAACAAGATGGTATGGATTCTCTGCAATGACTGCGGCTCAAACACGAACGTTCGGTTTCATTTGATCGCGCATAAATGCAGTAGCTGTGGTTCCTACAATACAAGACAGACACAGAGAGGCTCTGATAGTCACTCTTGCTCCTCTGGAATGCCTCAGGTTGTTGGTTCAACCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010119 GO:0050789 GO:0050794 GO:0065007 GO:1902456
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

291

Amino Acids

33.55

Weight (kDa)

6.58

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 27 - 101 1.6e-18 CHY zinc finger
zf-RING_5 PF14634 162 - 207 5.7e-08 zinc-RING finger domain
zf-RING_2 PF13639 162 - 205 1.1e-07 Ring finger domain
zf-C3HC4 PF00097 163 - 205 6.6e-06 Zinc finger, C3HC4 type (RING finger)
zinc_ribbon_6 PF14599 210 - 237 9.9e-06 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 767
AciI CCGC 1 cut(s) 732
AclI AACGTT 1 cut(s) 747
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 38
AfaI GTAC 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 633
AgeI ACCGGT 1 cut(s) 869
AgsI TTSAA 6 cut(s) 182, 222, 312, 467, 519, 867
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 3 cut(s) 161, 202, 783
AluI AGCT 3 cut(s) 161, 202, 783
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 783
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 869
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 2 cut(s) 473, 769
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 381
AxyI CCTNAGG 1 cut(s) 852
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 658
BccI CCATC 1 cut(s) 700
BcgI CGANNNNNNTGC 4 cut(s) 307, 341, 585, 619
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 563
BfoI RGCGCY 1 cut(s) 474
BisI GCNGC 2 cut(s) 672, 733
BlsI GCNGC 2 cut(s) 673, 734
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 5 cut(s) 89, 196, 407, 487, 568
BpiI GAAGAC 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 491
BsaWI WCCGGW 2 cut(s) 383, 869
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bse118I RCCGGY 1 cut(s) 869
Bse21I CCTNAGG 1 cut(s) 852
Bse3DI GCAATG 3 cut(s) 145, 406, 730
BseMI GCAATG 3 cut(s) 145, 406, 730
BseMII CTCAG 1 cut(s) 866
BseRI GAGGAG 2 cut(s) 402, 829
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 767
BshTI ACCGGT 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 3 cut(s) 384, 491, 870
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 2 cut(s) 572, 852
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 62, 334, 762
BspACI CCGC 1 cut(s) 732
BspCNI CTCAG 1 cut(s) 865
BspFNI CGCG 1 cut(s) 767
BspLI GGNNCC 1 cut(s) 790
BspPI GGATC 1 cut(s) 70
BsrDI GCAATG 3 cut(s) 145, 406, 730
BsrFI RCCGGY 1 cut(s) 869
BssAI RCCGGY 1 cut(s) 869
BssMI GATC 3 cut(s) 62, 334, 762
Bst4CI ACNGT 2 cut(s) 359, 535
Bst6I CTCTTC 2 cut(s) 177, 657
BstAPI GCANNNNNTGC 3 cut(s) 147, 417, 729
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 162, 852
BstFNI CGCG 1 cut(s) 767
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 2 cut(s) 473, 769
BstKTI GATC 3 cut(s) 65, 337, 765
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 62, 334, 762
BstMWI GCNNNNNNNGC 5 cut(s) 147, 417, 426, 612, 729
BstNSI RCATGY 2 cut(s) 606, 637
BstSCI CCNGG 1 cut(s) 489
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 852
BtsIMutI CAGTG 2 cut(s) 355, 531
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 783
CfoI GCGC 2 cut(s) 473, 769
Cfr10I RCCGGY 1 cut(s) 869
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 1 cut(s) 301
CspAI ACCGGT 1 cut(s) 869
CviAII CATG 6 cut(s) 17, 117, 197, 212, 603, 634
CviJI RGCY 6 cut(s) 161, 202, 586, 735, 783, 819
CviKI_1 RGCY 6 cut(s) 161, 202, 586, 735, 783, 819
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 162, 852
DpnI GATC 3 cut(s) 64, 336, 764
DpnII GATC 3 cut(s) 62, 334, 762
Eam1104I CTCTTC 2 cut(s) 177, 657
EarI CTCTTC 2 cut(s) 177, 657
Eco32I GATATC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 852
EcoRV GATATC 1 cut(s) 529
EcoT22I ATGCAT 2 cut(s) 480, 561
FaeI CATG 6 cut(s) 20, 120, 200, 215, 606, 637
FatI CATG 6 cut(s) 16, 116, 196, 211, 602, 633
FauNDI CATATG 2 cut(s) 230, 626
Fnu4HI GCNGC 2 cut(s) 672, 733
Fsp4HI GCNGC 2 cut(s) 672, 733
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 472, 768
GluI GCNGC 2 cut(s) 672, 733
HaeII RGCGCY 1 cut(s) 474
HapII CCGG 3 cut(s) 384, 491, 870
HhaI GCGC 2 cut(s) 473, 769
Hin1II CATG 6 cut(s) 20, 120, 200, 215, 606, 637
Hin6I GCGC 2 cut(s) 471, 767
HinP1I GCGC 2 cut(s) 471, 767
HinfI GANTC 4 cut(s) 46, 167, 515, 715
HpaII CCGG 3 cut(s) 384, 491, 870
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 823
Hpy188III TCNNGA 3 cut(s) 35, 563, 843
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 2 cut(s) 359, 535
HpyCH4IV ACGT 2 cut(s) 258, 747
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 417, 426, 612, 729
HpyF3I CTNAG 2 cut(s) 162, 852
HpySE526I ACGT 2 cut(s) 258, 747
Hsp92II CATG 6 cut(s) 20, 120, 200, 215, 606, 637
HspAI GCGC 2 cut(s) 471, 767
Kzo9I GATC 3 cut(s) 62, 334, 762
LmnI GCTCC 3 cut(s) 278, 620, 842
LpnPI CCDG 7 cut(s) 51, 364, 397, 504, 621, 828, 839
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 5 cut(s) 89, 196, 407, 487, 568
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 258, 747
MaeIII GTNAC 3 cut(s) 548, 629, 827
MalI GATC 3 cut(s) 64, 336, 764
MboI GATC 3 cut(s) 62, 334, 762
MboII GAAGA 6 cut(s) 105, 164, 316, 404, 661, 674
MfeI CAATTG 2 cut(s) 277, 484
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 4 cut(s) 38, 277, 438, 484
MnlI CCTC 7 cut(s) 216, 380, 439, 658, 809, 850, 861
Mph1103I ATGCAT 2 cut(s) 480, 561
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 1 cut(s) 874
MslI CAYNNNNRTG 4 cut(s) 21, 195, 360, 459
MspI CCGG 3 cut(s) 384, 491, 870
MspR9I CCNGG 1 cut(s) 491
MunI CAATTG 2 cut(s) 277, 484
Mva1269I GAATGC 2 cut(s) 572, 852
MvnI CGCG 1 cut(s) 767
MwoI GCNNNNNNNGC 5 cut(s) 147, 417, 426, 612, 729
NciI CCSGG 1 cut(s) 491
NdeI CATATG 2 cut(s) 230, 626
NdeII GATC 3 cut(s) 62, 334, 762
NlaIII CATG 6 cut(s) 20, 120, 200, 215, 606, 637
NlaIV GGNNCC 1 cut(s) 790
NmuCI GTSAC 3 cut(s) 548, 629, 827
NsiI ATGCAT 2 cut(s) 480, 561
NspI RCATGY 2 cut(s) 606, 637
OliI CACNNNNGTG 1 cut(s) 459
PciI ACATGT 1 cut(s) 633
PctI GAATGC 2 cut(s) 572, 852
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 4 cut(s) 46, 167, 515, 715
PinAI ACCGGT 1 cut(s) 869
PkrI GCNGC 2 cut(s) 673, 734
PscI ACATGT 1 cut(s) 633
Psp1406I AACGTT 1 cut(s) 747
PspN4I GGNNCC 1 cut(s) 790
PspPI GGNCC 1 cut(s) 381
PsrI GAACNNNNNNTAC 2 cut(s) 772, 804
PstNI CAGNNNCTG 1 cut(s) 783
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 4 cut(s) 21, 195, 360, 459
SaqAI TTAA 1 cut(s) 874
SatI GCNGC 2 cut(s) 672, 733
Sau3AI GATC 3 cut(s) 62, 334, 762
Sau96I GGNCC 1 cut(s) 381
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 115
SetI ASST 8 cut(s) 163, 204, 228, 261, 669, 750, 785, 858
SfaNI GCATC 5 cut(s) 89, 196, 407, 487, 568
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 4 cut(s) 21, 195, 360, 459
Sse9I AATT 4 cut(s) 38, 277, 438, 484
SsiI CCGC 1 cut(s) 732
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 2 cut(s) 359, 535
TaiI ACGT 2 cut(s) 261, 750
TaqI TCGA 2 cut(s) 208, 327
TasI AATT 4 cut(s) 38, 277, 438, 484
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 735
TfiI GAWTC 4 cut(s) 46, 167, 515, 715
Tru1I TTAA 1 cut(s) 874
Tru9I TTAA 1 cut(s) 874
TscAI CASTG 2 cut(s) 362, 538
TseFI GTSAC 3 cut(s) 548, 629, 827
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 3 cut(s) 548, 629, 827
TspDTI ATGAA 6 cut(s) 33, 164, 228, 675, 711, 746
TspRI CASTG 2 cut(s) 362, 538
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 38
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 2 cut(s) 606, 637
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 302
Zsp2I ATGCAT 2 cut(s) 480, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.