Rroxscaffold_6G00410580

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005998
Physical Location & Seq
Forward (+)
33005492 .. 33008260
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410580.1

Sequence Viewer

Length: 1065 bp
ATGAGAGGATTAAATTACACTAATGCGTCGACCGGCCAAAGCTGGCGTGGCATCTCGCCAACAGTTTCATATAAAGAGAGAGAAGGAAACCATCGAATTTATATATCAGCTTCAGAGGGCTTCCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAGGTGGGTGTTGGAGGAAATGGAGGTCGGATTTTTTGAGACCCAGGTGACTGTTGGCAAGGAACATTCTCGTGTGGATGAACAGTCTGTCAGGGAGAAGAAGGGATCTGGGGAATTTGGGTGCATGCATTACAGACGGAGATGCAAGATCAGAGCACCGTGTTGTGATGAGATTTTCGACTGCAGGCATTGCCATAACCAAGCCAAGAACACTTTGGAAGTTGAACCAGTTGATCGCCATGATATTCCTCGCCATGATCTGAAAAGGGTCATCTGTTCATTGTGCAACACAGAACAAGATGTTCAACAGCACTGTAGCCAATGTGGGGTTTGCATGGGAAACTACTTTTGCCCCAAATGCAAGTTTTTTGATGATGACGTTTCGAAAAAGCAGTATCATTGTGACCAATGCGGTATCTGCAGAACCGGAGGTGCGGAGAACTTTTTCCACTGTGACAGATGTGGATGCTGTTACTCAACAGTGCTGAAGGATTCACACAATTGTGTGGAAAAAGCAATGCATCACAATTGCCCTGTGTGCTTTGAGTTTCTTTTTGATACGACAGCAGACATTACTGTCTTACCATGTGGGCACACTATTCATTTGGAGTGTGTGAAAGAGATGGAGCGGCATTTTCAGTATTCTTGCCCAGTTTGCTCAAAATCGTATTGTGATATGTCACGTGTGTGGGAAAAACTGGACCAGGAGATTGATCTGACTCCAATGCCTCCGATGTATCAGAATAAGATGGTCTGGATCCTCTGCAATGATTGTGGACAAACATCAGATGTAAATTTTCACATTGTGGCACTCAAATGCCTCAAATGCAAATCCTACAATACAAGGCAGACACAAAGAGGGCCAGCATCATGCTCATCAAGGGTTTCAGAGATGGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

354

Amino Acids

40.69

Weight (kDa)

6.94

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 95 - 169 9.7e-18 CHY zinc finger
zf-RING_2 PF13639 230 - 273 2.2e-07 Ring finger domain
zf-RING_5 PF14634 230 - 275 2.1e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 231 - 271 2.3e-07 RING-type zinc-finger
zinc_ribbon_6 PF14599 278 - 336 1.1e-26 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 790
AccI GTMKAC 1 cut(s) 29
AciI CCGC 3 cut(s) 573, 596, 790
AclWI GGATC 3 cut(s) 274, 913, 926
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 3 cut(s) 96, 275, 955
AcuI CTGAAG 2 cut(s) 96, 668
AcvI CACGTG 1 cut(s) 845
AdeI CACNNNGTG 1 cut(s) 967
AfiI CCNNNNNNNGG 1 cut(s) 487
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 2 cut(s) 386, 467
AjnI CCWGG 2 cut(s) 204, 864
AleI CACNNNNGTG 2 cut(s) 663, 847
AluBI AGCT 2 cut(s) 42, 110
AluI AGCT 2 cut(s) 42, 110
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 3 cut(s) 274, 913, 926
AoxI GGCC 2 cut(s) 34, 1022
ApoI RAATTY 3 cut(s) 96, 275, 955
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 862, 1022
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 545
AvaII GGWCC 1 cut(s) 862
BaeGI GKGCMC 1 cut(s) 756
BamHI GGATCC 1 cut(s) 918
BauI CACGAG 1 cut(s) 231
BbrPI CACGTG 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 319
BccI CCATC 4 cut(s) 99, 778, 904, 1048
BciT130I CCWGG 2 cut(s) 206, 866
BcoDI GTCTC 1 cut(s) 194
BfmI CTRYAG 4 cut(s) 160, 343, 475, 580
BisI GCNGC 1 cut(s) 791
BlsI GCNGC 1 cut(s) 792
Bme1390I CCNGG 2 cut(s) 206, 866
Bme18I GGWCC 1 cut(s) 862
BmgT120I GGNCC 2 cut(s) 862, 1022
BmiI GGNNCC 1 cut(s) 920
BmrFI CCNGG 2 cut(s) 206, 866
BmrI ACTGGG 1 cut(s) 806
BmsI GCATC 5 cut(s) 60, 293, 617, 691, 1037
BmuI ACTGGG 1 cut(s) 806
Bpu14I TTCGAA 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 3 cut(s) 389, 812, 864
Bse3DI GCAATG 3 cut(s) 349, 684, 934
BseBI CCWGG 2 cut(s) 206, 866
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 244, 632
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 3 cut(s) 349, 684, 934
BseNI ACTGG 3 cut(s) 389, 812, 864
BseSI GKGCMC 1 cut(s) 756
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 36, 1024
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 33, 588
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 2 cut(s) 36, 1024
Bso31I GGTCTC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 319, 756
Bsp143I GATC 6 cut(s) 266, 309, 394, 418, 874, 918
BspACI CCGC 3 cut(s) 573, 596, 790
BspANI GGCC 2 cut(s) 36, 1024
BspLI GGNNCC 1 cut(s) 920
BspMAI CTGCAG 2 cut(s) 347, 584
BspPI GGATC 3 cut(s) 274, 913, 926
BspT104I TTCGAA 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 3 cut(s) 349, 684, 934
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 3 cut(s) 389, 812, 864
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 6 cut(s) 266, 309, 394, 418, 874, 918
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 206, 866
Bst4CI ACNGT 8 cut(s) 64, 214, 246, 321, 476, 614, 643, 739
BstAPI GCANNNNNTGC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 845
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 4 cut(s) 44, 287, 347, 1026
BstF5I GGATG 2 cut(s) 244, 632
BstKTI GATC 6 cut(s) 269, 312, 397, 421, 877, 921
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 6 cut(s) 266, 309, 394, 418, 874, 918
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 7 cut(s) 48, 351, 519, 579, 699, 816, 987
BstNI CCWGG 2 cut(s) 206, 866
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 204, 864
BstSFI CTRYAG 4 cut(s) 160, 343, 475, 580
BstSLI GKGCMC 1 cut(s) 756
BstX2I RGATCY 2 cut(s) 266, 918
BstYI RGATCY 2 cut(s) 266, 918
BsuRI GGCC 2 cut(s) 36, 1024
BtsCI GGATG 2 cut(s) 244, 632
BtsIMutI CAGTG 3 cut(s) 472, 610, 648
Cac8I GCNNGC 4 cut(s) 44, 287, 347, 1026
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 862, 1022
CseI GACGC 1 cut(s) 15
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 6 cut(s) 286, 401, 416, 496, 747, 1032
CviJI RGCY 7 cut(s) 36, 42, 110, 120, 365, 480, 1024
CviKI_1 RGCY 7 cut(s) 36, 42, 110, 120, 365, 480, 1024
DpnI GATC 6 cut(s) 268, 311, 396, 420, 876, 920
DpnII GATC 6 cut(s) 266, 309, 394, 418, 874, 918
DraIII CACNNNGTG 1 cut(s) 967
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 862
Eco57I CTGAAG 2 cut(s) 96, 668
Eco72I CACGTG 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 204, 864
EcoT22I ATGCAT 2 cut(s) 291, 684
FaeI CATG 6 cut(s) 289, 404, 419, 499, 750, 1035
FatI CATG 6 cut(s) 285, 400, 415, 495, 746, 1031
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 791
FokI GGATG 2 cut(s) 251, 639
Fsp4HI GCNGC 1 cut(s) 791
GluI GCNGC 1 cut(s) 791
HaeIII GGCC 2 cut(s) 36, 1024
HapII CCGG 2 cut(s) 33, 588
HgaI GACGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 289, 404, 419, 499, 750, 1035
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 653, 880
HpaII CCGG 2 cut(s) 33, 588
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 30, 938
Hpy188I TCNGA 9 cut(s) 115, 191, 314, 423, 879, 894, 903, 949, 1051
Hpy188III TCNNGA 1 cut(s) 916
Hpy8I GTNNAC 2 cut(s) 30, 938
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 3 cut(s) 77, 256, 643
HpyCH4III ACNGT 8 cut(s) 64, 214, 246, 321, 476, 614, 643, 739
HpyCH4IV ACGT 2 cut(s) 540, 844
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 351, 519, 579, 699, 816, 987
HpySE526I ACGT 2 cut(s) 540, 844
Hsp92II CATG 6 cut(s) 289, 404, 419, 499, 750, 1035
Kzo9I GATC 6 cut(s) 266, 309, 394, 418, 874, 918
LmnI GCTCC 1 cut(s) 787
LweI GCATC 5 cut(s) 60, 293, 617, 691, 1037
MaeII ACGT 2 cut(s) 540, 844
MaeIII GTNAC 5 cut(s) 208, 563, 614, 632, 840
MalI GATC 6 cut(s) 268, 311, 396, 420, 876, 920
MbiI CCGCTC 1 cut(s) 790
MboI GATC 6 cut(s) 266, 309, 394, 418, 874, 918
MboII GAAGA 1 cut(s) 271
MfeI CAATTG 2 cut(s) 661, 688
MflI RGATCY 2 cut(s) 266, 918
MhlI GDGCHC 2 cut(s) 319, 756
MluCI AATT 6 cut(s) 13, 96, 275, 661, 688, 955
MlyI GAGTC 1 cut(s) 874
MmeI TCCRAC 2 cut(s) 153, 169
MnlI CCTC 9 cut(s) 109, 169, 178, 420, 584, 900, 932, 992, 1013
Mph1103I ATGCAT 2 cut(s) 291, 684
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 4 cut(s) 231, 663, 847, 976
MspI CCGG 2 cut(s) 33, 588
MspR9I CCNGG 2 cut(s) 206, 866
MunI CAATTG 2 cut(s) 661, 688
MvaI CCWGG 2 cut(s) 206, 866
MwoI GCNNNNNNNGC 7 cut(s) 48, 351, 519, 579, 699, 816, 987
NdeII GATC 6 cut(s) 266, 309, 394, 418, 874, 918
NlaIII CATG 6 cut(s) 289, 404, 419, 499, 750, 1035
NlaIV GGNNCC 1 cut(s) 920
NmuCI GTSAC 4 cut(s) 208, 563, 614, 840
NsiI ATGCAT 2 cut(s) 291, 684
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 1 cut(s) 545
OliI CACNNNNGTG 2 cut(s) 663, 847
PaeI GCATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 1 cut(s) 792
PleI GAGTC 1 cut(s) 874
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 1 cut(s) 874
Ppu21I YACGTR 1 cut(s) 845
Psp6I CCWGG 2 cut(s) 204, 864
PspCI CACGTG 1 cut(s) 845
PspGI CCWGG 2 cut(s) 204, 864
PspN4I GGNNCC 1 cut(s) 920
PspPI GGNCC 2 cut(s) 862, 1022
PstI CTGCAG 2 cut(s) 347, 584
PsuI RGATCY 2 cut(s) 266, 918
RseI CAYNNNNRTG 4 cut(s) 231, 663, 847, 976
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 791
Sau3AI GATC 6 cut(s) 266, 309, 394, 418, 874, 918
Sau96I GGNCC 2 cut(s) 862, 1022
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 2 cut(s) 206, 866
SduI GDGCHC 2 cut(s) 319, 756
SetI ASST 8 cut(s) 44, 112, 167, 189, 210, 543, 595, 847
SfaNI GCATC 5 cut(s) 60, 293, 617, 691, 1037
SfcI CTRYAG 4 cut(s) 160, 343, 475, 580
SfuI TTCGAA 1 cut(s) 545
SinI GGWCC 1 cut(s) 862
SmiMI CAYNNNNRTG 4 cut(s) 231, 663, 847, 976
SphI GCATGC 1 cut(s) 289
Sse9I AATT 6 cut(s) 13, 96, 275, 661, 688, 955
SsiI CCGC 3 cut(s) 573, 596, 790
StyD4I CCNGG 2 cut(s) 204, 864
TaaI ACNGT 8 cut(s) 64, 214, 246, 321, 476, 614, 643, 739
TaiI ACGT 2 cut(s) 543, 847
TaqI TCGA 4 cut(s) 29, 94, 339, 545
TasI AATT 6 cut(s) 13, 96, 275, 661, 688, 955
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 3 cut(s) 479, 617, 648
TseFI GTSAC 4 cut(s) 208, 563, 614, 840
Tsp45I GTSAC 4 cut(s) 208, 563, 614, 840
TspDTI ATGAA 4 cut(s) 57, 255, 429, 752
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 3 cut(s) 479, 617, 648
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 3 cut(s) 96, 275, 955
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 3 cut(s) 44, 212, 373
XmiI GTMKAC 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 605
Zsp2I ATGCAT 2 cut(s) 291, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.