Rh3DG188900

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005998
Physical Location & Seq
Forward (+)
16841373 .. 16845131
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG188900.1

Sequence Viewer

Length: 882 bp
ATGGAGGGCGGATTTTTTGAGACCCAGGTGACCGTTGGCAAGGAACATTCTTGTGTGGATGAACAGTCTGTCAGGGAGAAGGGACCTGCGGAATTTGGGTGCATGCATTACAGACGGAGATGCAAGATCAGAGCACCTTGTTGTGATGAGATTTTCGACTGCAGGCATTGCCATAACGAAGCCAAGAATGCTTTGGAAGTTGAACCAGTTGATCGCCATGATATTCCTCGCCATGATCTGAAAAGGGTCATCTGTTCATTGTGCAACACAGAACAAGATGTTCAACAGCACTGTAGCCAATGTGGGGTTTGCATGGGAAACTACTTTTGCCCCAAATGCAAGTTTTTTGATGATGACGTTTCGAAAAAGCAGTATCATTGTGACCAATGCGGCATCTGCAGAACCGGAGGTGCAGAGAACTTTTTCCACTGTGACAGATGTGGATGCTGTTACTCAACAGTGCTGAAGGATTCACACAATTGTGTGGAAAAAGCGATGCATCACAATTGCCCTGTGTGCTTTGAGTTTCTTTTTGATACGACAGCAGACATTACTGTCTTACCATGTGGGCACACTATACATTTGGAATGTGTGAAAGAGATGGAGCGGCATTTTCAGTATTCTTGCCCAGTTTGCTCAAAATCGTACTGTGATATGTCACGTGTGTGGGAAAAACTGGACCACGAGATTGATGCGACTCCAATGCCGCCGATGTATCAGAATAAGATGGTCTGGATCCTCTGCAATGATTGTGGACAAACGTCAGAGGTAAATTTTCACATTGTGGCACTCAAATGCCTCAAATGCAAATCCTACAATACGAGGCAGACACAAAGAGGGCCAGCATCATGCTCATCAAGGGTTTCAGAGATGGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

293

Amino Acids

33.71

Weight (kDa)

6.37

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 34 - 108 1.3e-16 CHY zinc finger
zf-RING_2 PF13639 169 - 212 1.8e-07 Ring finger domain
zf-RING_5 PF14634 169 - 214 1.6e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 170 - 210 1.6e-07 RING-type zinc-finger
zinc_ribbon_6 PF14599 217 - 275 2.9e-27 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 607
AciI CCGC 5 cut(s) 9, 89, 390, 607, 707
AclWI GGATC 2 cut(s) 730, 743
AcsI RAATTY 2 cut(s) 92, 772
AcuI CTGAAG 1 cut(s) 485
AcvI CACGTG 1 cut(s) 662
AdeI CACNNNGTG 1 cut(s) 784
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 2 cut(s) 203, 284
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 2 cut(s) 480, 664
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 730, 743
AoxI GGCC 1 cut(s) 839
ApoI RAATTY 2 cut(s) 92, 772
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 3 cut(s) 83, 679, 839
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 362
AvaII GGWCC 2 cut(s) 83, 679
BaeGI GKGCMC 1 cut(s) 573
BamHI GGATCC 1 cut(s) 735
BauI CACGAG 1 cut(s) 683
BbrPI CACGTG 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 136
BccI CCATC 3 cut(s) 595, 721, 865
BcgI CGANNNNNNTGC 4 cut(s) 674, 685, 708, 719
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 14
BfmI CTRYAG 3 cut(s) 160, 292, 397
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 3 cut(s) 391, 608, 707
BlsI GCNGC 3 cut(s) 392, 609, 708
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 83, 679
BmgT120I GGNCC 3 cut(s) 83, 679, 839
BmiI GGNNCC 2 cut(s) 84, 737
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 7 cut(s) 110, 402, 434, 486, 508, 682, 854
BmuI ACTGGG 1 cut(s) 623
BoxI GACNNNNGTC 1 cut(s) 760
Bpu14I TTCGAA 1 cut(s) 362
BsaAI YACGTR 1 cut(s) 662
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 3 cut(s) 206, 629, 681
Bse3DI GCAATG 2 cut(s) 166, 751
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 64, 449
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 2 cut(s) 166, 751
BseNI ACTGG 3 cut(s) 206, 629, 681
BseSI GKGCMC 1 cut(s) 573
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 1 cut(s) 841
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 841
Bso31I GGTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 136, 573
Bsp143I GATC 4 cut(s) 126, 211, 235, 735
BspACI CCGC 5 cut(s) 9, 89, 390, 607, 707
BspANI GGCC 1 cut(s) 841
BspLI GGNNCC 2 cut(s) 84, 737
BspMAI CTGCAG 2 cut(s) 164, 401
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 2 cut(s) 730, 743
BspT104I TTCGAA 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 607
BsrDI GCAATG 2 cut(s) 166, 751
BsrI ACTGG 3 cut(s) 206, 629, 681
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 4 cut(s) 126, 211, 235, 735
BssSI CACGAG 1 cut(s) 683
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 7 cut(s) 34, 66, 293, 431, 460, 556, 650
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 662
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 104, 164, 843
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 64, 449
BstKTI GATC 4 cut(s) 129, 214, 238, 738
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 4 cut(s) 126, 211, 235, 735
BstMWI GCNNNNNNNGC 7 cut(s) 168, 188, 336, 396, 516, 633, 804
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 106
BstPAI GACNNNNGTC 1 cut(s) 760
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 3 cut(s) 160, 292, 397
BstSLI GKGCMC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 735
BstYI RGATCY 1 cut(s) 735
BsuRI GGCC 1 cut(s) 841
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 64, 449
BtsIMutI CAGTG 3 cut(s) 289, 427, 465
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 3 cut(s) 104, 164, 843
Cfr13I GGNCC 3 cut(s) 83, 679, 839
Csp6I GTAC 1 cut(s) 646
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 6 cut(s) 103, 218, 233, 313, 564, 849
CviJI RGCY 3 cut(s) 182, 297, 841
CviKI_1 RGCY 3 cut(s) 182, 297, 841
CviQI GTAC 1 cut(s) 646
DpnI GATC 4 cut(s) 128, 213, 237, 737
DpnII GATC 4 cut(s) 126, 211, 235, 735
DraIII CACNNNGTG 1 cut(s) 784
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
EciI GGCGGA 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 83, 679
Eco57I CTGAAG 1 cut(s) 485
Eco72I CACGTG 1 cut(s) 662
Eco91I GGTNACC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 2 cut(s) 108, 501
FaeI CATG 6 cut(s) 106, 221, 236, 316, 567, 852
FaiI YATR 9 cut(s) 104, 174, 219, 234, 314, 565, 578, 656, 850
FaqI GGGAC 1 cut(s) 96
FatI CATG 6 cut(s) 102, 217, 232, 312, 563, 848
Fnu4HI GCNGC 3 cut(s) 391, 608, 707
FokI GGATG 2 cut(s) 71, 456
Fsp4HI GCNGC 3 cut(s) 391, 608, 707
GluI GCNGC 3 cut(s) 391, 608, 707
HaeIII GGCC 1 cut(s) 841
HapII CCGG 1 cut(s) 405
Hin1II CATG 6 cut(s) 106, 221, 236, 316, 567, 852
HinfI GANTC 2 cut(s) 470, 697
HpaII CCGG 1 cut(s) 405
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 755
Hpy188I TCNGA 5 cut(s) 131, 240, 720, 766, 868
Hpy188III TCNNGA 1 cut(s) 733
Hpy8I GTNNAC 1 cut(s) 755
HpyAV CCTTC 2 cut(s) 73, 460
HpyCH4III ACNGT 7 cut(s) 34, 66, 293, 431, 460, 556, 650
HpyCH4IV ACGT 3 cut(s) 357, 661, 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 168, 188, 336, 396, 516, 633, 804
HpySE526I ACGT 3 cut(s) 357, 661, 761
Hsp92II CATG 6 cut(s) 106, 221, 236, 316, 567, 852
Kzo9I GATC 4 cut(s) 126, 211, 235, 735
LmnI GCTCC 1 cut(s) 604
LweI GCATC 7 cut(s) 110, 402, 434, 486, 508, 682, 854
MaeII ACGT 3 cut(s) 357, 661, 761
MaeIII GTNAC 5 cut(s) 28, 380, 431, 449, 657
MalI GATC 4 cut(s) 128, 213, 237, 737
MbiI CCGCTC 1 cut(s) 607
MboI GATC 4 cut(s) 126, 211, 235, 735
MfeI CAATTG 2 cut(s) 478, 505
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 2 cut(s) 136, 573
MluCI AATT 4 cut(s) 92, 478, 505, 772
MlyI GAGTC 1 cut(s) 691
MnlI CCTC 7 cut(s) 237, 401, 749, 760, 809, 816, 830
Mph1103I ATGCAT 2 cut(s) 108, 501
MroXI GAANNNNTTC 1 cut(s) 422
MslI CAYNNNNRTG 4 cut(s) 51, 480, 664, 793
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 2 cut(s) 478, 505
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 7 cut(s) 168, 188, 336, 396, 516, 633, 804
NdeII GATC 4 cut(s) 126, 211, 235, 735
NlaIII CATG 6 cut(s) 106, 221, 236, 316, 567, 852
NlaIV GGNNCC 2 cut(s) 84, 737
NmuCI GTSAC 4 cut(s) 28, 380, 431, 657
NsiI ATGCAT 2 cut(s) 108, 501
NspI RCATGY 1 cut(s) 106
NspV TTCGAA 1 cut(s) 362
OliI CACNNNNGTG 2 cut(s) 480, 664
PaeI GCATGC 1 cut(s) 106
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 392, 609, 708
PleI GAGTC 1 cut(s) 691
PmaCI CACGTG 1 cut(s) 662
PmlI CACGTG 1 cut(s) 662
PpsI GAGTC 1 cut(s) 691
Ppu21I YACGTR 1 cut(s) 662
PpuMI RGGWCCY 1 cut(s) 83
PshAI GACNNNNGTC 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 24
PspCI CACGTG 1 cut(s) 662
PspEI GGTNACC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 84, 737
PspPI GGNCC 3 cut(s) 83, 679, 839
PspPPI RGGWCCY 1 cut(s) 83
PstI CTGCAG 2 cut(s) 164, 401
PsuI RGATCY 1 cut(s) 735
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 4 cut(s) 51, 480, 664, 793
SatI GCNGC 3 cut(s) 391, 608, 707
Sau3AI GATC 4 cut(s) 126, 211, 235, 735
Sau96I GGNCC 3 cut(s) 83, 679, 839
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 136, 573
SetI ASST 8 cut(s) 30, 88, 139, 360, 412, 664, 764, 771
SfaNI GCATC 7 cut(s) 110, 402, 434, 486, 508, 682, 854
SfcI CTRYAG 3 cut(s) 160, 292, 397
SfuI TTCGAA 1 cut(s) 362
SinI GGWCC 2 cut(s) 83, 679
SmiMI CAYNNNNRTG 4 cut(s) 51, 480, 664, 793
SphI GCATGC 1 cut(s) 106
Sse9I AATT 4 cut(s) 92, 478, 505, 772
SsiI CCGC 5 cut(s) 9, 89, 390, 607, 707
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 7 cut(s) 34, 66, 293, 431, 460, 556, 650
TaiI ACGT 3 cut(s) 360, 664, 764
TaqI TCGA 2 cut(s) 156, 362
TasI AATT 4 cut(s) 92, 478, 505, 772
TauI GCSGC 3 cut(s) 393, 610, 709
TfiI GAWTC 1 cut(s) 470
TscAI CASTG 3 cut(s) 296, 434, 465
TseFI GTSAC 4 cut(s) 28, 380, 431, 657
Tsp45I GTSAC 4 cut(s) 28, 380, 431, 657
TspDTI ATGAA 2 cut(s) 75, 246
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 3 cut(s) 296, 434, 465
VpaK11BI GGWCC 2 cut(s) 83, 679
XapI RAATTY 2 cut(s) 92, 772
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 2 cut(s) 32, 190
XmnI GAANNNNTTC 1 cut(s) 422
Zsp2I ATGCAT 2 cut(s) 108, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.