Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005998

Physical Location & Seq

Genomic Coordinates Reverse (-)

15504653 .. 15508836

Gene Structure 4184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG176600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGGGCGGATTTTTGGAGACCCAAGTGACTGTTGGGAAGGAACATTCTTGTGTGGATGAACAGTCTGTCAGGGAGAAGGGACCTGGGGAATTTGGGTGCATGCATTACAGACGGGGATGCAAGATCAGAGCACCTTGTTGTGATGAGATTTTCGACTGCAGGCATTGCCATAACGAAGCCAAGAATGCTTTGGAAGTTGAACCAGTTGATCGCCATGATATTCCTCGCCATGATCTGAAAAGGGTCATCTGTTCATTGTGCAACACAGAACAAGATGTTCAACAGCACTGTAGCCAATGTGGGGTTTGCATGGGAAACTACTTTTGCCCCAAATGCAAGTTTTTTGATGATGACGTTTCGAAAAAGCAGTATCATTGTGATCAATGCGGCATCTGCAGAACCGGGGGTGCGGAGAACTTTTTCCACTGTGACAGATGTGGGTGCTGTTACTCAACAGTGCTGAAGGATTCACACAATTGTGTGGAAAAAGCAATGCATCACAATTGCCCTGTGTGCTTTGAGTTTCTTTTTGATACGACAGCAGACATTACTGTCTTACCATGTGGGCACACTATACATTTGGAATGTGTGAAAGAGATGGAGCGGCATTTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

206

Amino Acids

23.57

Weight (kDa)

5.89

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	34 - 108	4.1e-18	CHY zinc finger
zf-RING_UBOX	PF13445	170 - 201	2.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22920 AT5G22920
fragaria_vesca	FvH4_6g16750
malus_domestica	MD12G1107600.v1.1
prunus_persica	Prupe.7G126100_v2.0.a1
pyrus_communis	pycom04g08360 pycom12g10770
rosa_chinensis	RchiOBHm_Chr3g0470691 RchiOBHm_Chr5g0056891
rosa_laevigata	RLG00000024247
rosa_multiflora	Rmu_sc0006168.1_g000024
rosa_roxburghii	Rroxscaffold_1G00023410 Rroxscaffold_6G00410580
rosa_rugosa	Rorug03G0112100 Rorug03G0112200 Rorug05G0303400 Rorug05G0303500
rosa_samantha	Rh3AG161700 Rh3BG186200 Rh3CG176600 Rh3DG188900 Rh5AG373400 Rh5CG407600 Rh5DG397700
rosa_wichuraiana	Rw0G004620 Rw3G015250 Rw5G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	607
AciI	CCGC	4 cut(s)	9, 390, 413, 607
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	203, 284
AjnI	CCWGG	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	480
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	406
AsuII	TTCGAA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	3 cut(s)	160, 292, 397
BisI	GCNGC	2 cut(s)	391, 608
BlsI	GCNGC	2 cut(s)	392, 609
Bme1390I	CCNGG	2 cut(s)	87, 406
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	87, 406
BmsI	GCATC	3 cut(s)	110, 402, 508
Bpu14I	TTCGAA	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	86, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	2 cut(s)	166, 501
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	86, 405
BseGI	GGATG	2 cut(s)	64, 125
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	166, 501
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	193
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	136, 573
Bsp143I	GATC	4 cut(s)	126, 211, 235, 382
BspACI	CCGC	4 cut(s)	9, 390, 413, 607
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	2 cut(s)	164, 401
BspT104I	TTCGAA	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	2 cut(s)	166, 501
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	86, 405
BssMI	GATC	4 cut(s)	126, 211, 235, 382
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	6 cut(s)	34, 66, 293, 431, 460, 556
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	104, 164
BstF5I	GGATG	2 cut(s)	64, 125
BstKTI	GATC	4 cut(s)	129, 214, 238, 385
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	126, 211, 235, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 188, 336, 396, 516
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	85, 404
BstSFI	CTRYAG	3 cut(s)	160, 292, 397
BstSLI	GKGCMC	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	64, 125
BtsIMutI	CAGTG	3 cut(s)	289, 427, 465
Cac8I	GCNNGC	2 cut(s)	104, 164
Cfr13I	GGNCC	1 cut(s)	83
CviAII	CATG	5 cut(s)	103, 218, 233, 313, 564
CviJI	RGCY	2 cut(s)	182, 297
CviKI_1	RGCY	2 cut(s)	182, 297
DpnI	GATC	4 cut(s)	128, 213, 237, 384
DpnII	GATC	4 cut(s)	126, 211, 235, 382
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	85
EcoT22I	ATGCAT	2 cut(s)	108, 501
FaeI	CATG	5 cut(s)	106, 221, 236, 316, 567
FaiI	YATR	7 cut(s)	104, 174, 219, 234, 314, 565, 578
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	102, 217, 232, 312, 563
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	391, 608
FokI	GGATG	2 cut(s)	71, 132
Fsp4HI	GCNGC	2 cut(s)	391, 608
GluI	GCNGC	2 cut(s)	391, 608
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	5 cut(s)	106, 221, 236, 316, 567
HinfI	GANTC	1 cut(s)	470
HpaII	CCGG	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	131, 240
HpyAV	CCTTC	3 cut(s)	34, 73, 460
HpyCH4III	ACNGT	6 cut(s)	34, 66, 293, 431, 460, 556
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	9 cut(s)	102, 106, 123, 162, 264, 312, 339, 399, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 188, 336, 396, 516
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	106, 221, 236, 316, 567
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	126, 211, 235, 382
LmnI	GCTCC	1 cut(s)	604
LpnPI	CCDG	7 cut(s)	58, 72, 99, 148, 219, 418, 525
LweI	GCATC	3 cut(s)	110, 402, 508
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	28, 431, 449
MalI	GATC	4 cut(s)	128, 213, 237, 384
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	4 cut(s)	126, 211, 235, 382
MfeI	CAATTG	2 cut(s)	478, 505
MhlI	GDGCHC	2 cut(s)	136, 573
MluCI	AATT	3 cut(s)	92, 478, 505
MnlI	CCTC	1 cut(s)	237
Mph1103I	ATGCAT	2 cut(s)	108, 501
MroXI	GAANNNNTTC	1 cut(s)	422
MslI	CAYNNNNRTG	2 cut(s)	51, 480
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	87, 406
MunI	CAATTG	2 cut(s)	478, 505
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	168, 188, 336, 396, 516
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	126, 211, 235, 382
NlaIII	CATG	5 cut(s)	106, 221, 236, 316, 567
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	28, 431
NsiI	ATGCAT	2 cut(s)	108, 501
NspI	RCATGY	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	480
PaeI	GCATGC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	392, 609
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	83
PspPPI	RGGWCCY	1 cut(s)	83
PstI	CTGCAG	2 cut(s)	164, 401
RseI	CAYNNNNRTG	2 cut(s)	51, 480
SatI	GCNGC	2 cut(s)	391, 608
Sau3AI	GATC	4 cut(s)	126, 211, 235, 382
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	87, 406
SduI	GDGCHC	2 cut(s)	136, 573
SetI	ASST	3 cut(s)	88, 139, 360
SfaNI	GCATC	3 cut(s)	110, 402, 508
SfcI	CTRYAG	3 cut(s)	160, 292, 397
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	51, 480
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	92, 478, 505
SsiI	CCGC	4 cut(s)	9, 390, 413, 607
StyD4I	CCNGG	2 cut(s)	85, 404
TaaI	ACNGT	6 cut(s)	34, 66, 293, 431, 460, 556
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	156, 362
TasI	AATT	3 cut(s)	92, 478, 505
TauI	GCSGC	2 cut(s)	393, 610
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	3 cut(s)	296, 434, 465
TseFI	GTSAC	2 cut(s)	28, 431
Tsp45I	GTSAC	2 cut(s)	28, 431
TspDTI	ATGAA	2 cut(s)	75, 246
TspRI	CASTG	3 cut(s)	296, 434, 465
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	2 cut(s)	32, 190
XmnI	GAANNNNTTC	1 cut(s)	422
Zsp2I	ATGCAT	2 cut(s)	108, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.