Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005998

Physical Location & Seq

Genomic Coordinates Reverse (-)

28901164 .. 28903709

Gene Structure 2546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAACGATGCCCTGTTTTCATCGTTCAGAAAGAAAGGAGTTTGGTCATGAAGATCATTTGTCTCTAACAGAGCTTGGAGCTGGGAATTTTGGGTGCTCGCATTATAAAAGAAGATGCAAAATCAGAGCTCCTTGTTGTAACGAGGTTTATGATTGTCGGCATTGCCATGATGAAGCAAAGGTTCATGACTCCCTAGATACTGATCCCCTTGATCGACATGTCATTTCTCGTCACGAGGTTAAAAAGGTCATCTGCTGTCTGTGTGGCATAGAACAAGATGTTCAACAACATTGCGTTAGCTGTGGAGTTTGCATGGGAAAGTACTTTTGCGCGATATGCAACTTCTATGATGATGATGTTTCAAAAGATATATACCACTGTGATAAATGTGGAATATGCAGGAACCGGAGGGGAGAAAATTTCTTCCATTGTGAGAAATGCGGATGCTGCTACCCTAAGTCAGTGAAAGATCATCGCTGTATAGAAAGGGCAATGCACCATAACTGTCCTGTTTGTTTTGAGTTTCTATTTGATTCAAGGAGAGATATTAGCATATTACGCTGTGGACACACAATACATTGTGAATGTCTGAAAGAGATGAAGCTGCATGCACAGTATTCATGCCCTATCTGCTCAAAGTCCATCTTTGACATATCCAACTTGTGGAAAAAGCTTGATGAACTGGTTGCCTCAACTCCAATGCCTCATGCGTACAGAACCAAAATGGTGGGGATCCTCTGCAATGATTGTGGAGCTAAAGGTGAAGTCAGTTTTCACATTGTGGCACACAAATGTCTCAGCTGCAATTCTTACAATACTAAGCAGACACAAGGAGGTCATGGTGCTTCATGCTTATCAGATCATGTGGCTGAGATAGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010119 GO:0050789 GO:0050794 GO:0065007 GO:1902456

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

295

Amino Acids

33.73

Weight (kDa)

7.45

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	33 - 109	8e-17	CHY zinc finger
zf-RING_5	PF14634	169 - 214	4.6e-07	zinc-RING finger domain
zf-RING_2	PF13639	169 - 212	3.7e-06	Ring finger domain
zinc_ribbon_6	PF14599	218 - 275	1.9e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22920 AT5G22920
fragaria_vesca	FvH4_6g16750
malus_domestica	MD12G1107600.v1.1
prunus_persica	Prupe.7G126100_v2.0.a1
pyrus_communis	pycom04g08360 pycom12g10770
rosa_chinensis	RchiOBHm_Chr3g0470691 RchiOBHm_Chr5g0056891
rosa_laevigata	RLG00000024247
rosa_multiflora	Rmu_sc0006168.1_g000024
rosa_roxburghii	Rroxscaffold_1G00023410 Rroxscaffold_6G00410580
rosa_rugosa	Rorug03G0112100 Rorug03G0112200 Rorug05G0303400 Rorug05G0303500
rosa_samantha	Rh3AG161700 Rh3BG186200 Rh3CG176600 Rh3DG188900 Rh5AG373400 Rh5CG407600 Rh5DG397700
rosa_wichuraiana	Rw0G004620 Rw3G015250 Rw5G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	666
AccII	CGCG	1 cut(s)	335
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	3 cut(s)	200, 730, 743
AcsI	RAATTY	2 cut(s)	88, 421
AdeI	CACNNNGTG	1 cut(s)	784
AfaI	GTAC	2 cut(s)	326, 716
AfiI	CCNNNNNNNGG	1 cut(s)	666
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	287, 366, 540
AluBI	AGCT	8 cut(s)	76, 83, 131, 303, 607, 676, 758, 804
AluI	AGCT	8 cut(s)	76, 83, 131, 303, 607, 676, 758, 804
Alw21I	GWGCWC	2 cut(s)	101, 133
Alw26I	GTCTC	2 cut(s)	69, 803
AlwI	GGATC	3 cut(s)	200, 730, 743
ApeKI	GCWGC	3 cut(s)	450, 607, 804
ApoI	RAATTY	2 cut(s)	88, 421
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	776
BamHI	GGATCC	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	101, 133
BbvI	GCAGC	3 cut(s)	437, 594, 791
BccI	CCATC	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	69, 803
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	451, 608, 805
BlsI	GCNGC	3 cut(s)	452, 609, 806
BmcAI	AGTACT	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	407, 737
BmsI	GCATC	2 cut(s)	107, 437
BsaBI	GATNNNNATC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse1I	ACTGG	1 cut(s)	690
Bse3DI	GCAATG	4 cut(s)	163, 292, 501, 751
Bse8I	GATNNNNATC	1 cut(s)	204
BseGI	GGATG	1 cut(s)	452
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMI	GCAATG	4 cut(s)	163, 292, 501, 751
BseMII	CTCAG	2 cut(s)	814, 864
BseNI	ACTGG	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	437, 594, 791
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	101, 133
BsiSI	CCGG	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	2 cut(s)	69, 803
Bsp1286I	GDGCHC	2 cut(s)	101, 133
Bsp143I	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
BspACI	CCGC	1 cut(s)	444
BspCNI	CTCAG	2 cut(s)	813, 865
BspFNI	CGCG	1 cut(s)	335
BspHI	TCATGA	2 cut(s)	49, 187
BspLI	GGNNCC	2 cut(s)	407, 737
BspPI	GGATC	3 cut(s)	200, 730, 743
BsrDI	GCAATG	4 cut(s)	163, 292, 501, 751
BsrI	ACTGG	1 cut(s)	690
BssMI	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	383, 509, 618
BstC8I	GCNNGC	2 cut(s)	101, 612
BstDEI	CTNAG	4 cut(s)	459, 800, 822, 873
BstF5I	GGATG	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	6 cut(s)	58, 208, 217, 475, 738, 865
BstMAI	GTCTC	2 cut(s)	69, 803
BstMBI	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	339, 450, 561, 633
BstNSI	RCATGY	2 cut(s)	224, 614
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	437, 594, 791
BstX2I	RGATCY	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	735
BtgZI	GCGATG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	379, 471
Cac8I	GCNNGC	2 cut(s)	101, 612
CciI	TCATGA	2 cut(s)	49, 187
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	325, 715
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviJI	RGCY	9 cut(s)	76, 83, 131, 303, 607, 676, 758, 804, 872
CviKI_1	RGCY	9 cut(s)	76, 83, 131, 303, 607, 676, 758, 804, 872
CviQI	GTAC	2 cut(s)	325, 715
DdeI	CTNAG	4 cut(s)	459, 800, 822, 873
DpnI	GATC	6 cut(s)	57, 207, 216, 474, 737, 864
DpnII	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
DraIII	CACNNNGTG	1 cut(s)	784
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	133
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
Fnu4HI	GCNGC	3 cut(s)	451, 608, 805
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	451, 608, 805
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	451, 608, 805
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	1 cut(s)	409
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	191, 536
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	4 cut(s)	31, 128, 594, 862
Hpy188III	TCNNGA	3 cut(s)	50, 188, 236
Hpy8I	GTNNAC	1 cut(s)	569
HpyCH4III	ACNGT	3 cut(s)	383, 509, 618
HpyCH4V	TGCA	9 cut(s)	120, 315, 342, 402, 499, 610, 614, 744, 807
HpyF10VI	GCNNNNNNNGC	4 cut(s)	339, 450, 561, 633
HpyF3I	CTNAG	4 cut(s)	459, 800, 822, 873
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
LmnI	GCTCC	3 cut(s)	80, 136, 755
LpnPI	CCDG	6 cut(s)	28, 69, 388, 422, 525, 671
Lsp1109I	GCAGC	3 cut(s)	437, 594, 791
LweI	GCATC	2 cut(s)	107, 437
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	2 cut(s)	140, 233
MalI	GATC	6 cut(s)	57, 207, 216, 474, 737, 864
MboI	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
MboII	GAAGA	3 cut(s)	65, 126, 418
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	2 cut(s)	101, 133
MluCI	AATT	3 cut(s)	88, 421, 808
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	7 cut(s)	139, 232, 405, 703, 717, 749, 830
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	168, 793
MspA1I	CMGCKG	1 cut(s)	804
MspI	CCGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	339, 450, 561, 633
NdeII	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
NlaIV	GGNNCC	2 cut(s)	407, 737
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	2 cut(s)	224, 614
PaeI	GCATGC	1 cut(s)	614
PagI	TCATGA	2 cut(s)	49, 187
PciI	ACATGT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	666
PkrI	GCNGC	3 cut(s)	452, 609, 806
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	407, 737
PsuI	RGATCY	1 cut(s)	735
PvuII	CAGCTG	1 cut(s)	804
RsaI	GTAC	2 cut(s)	326, 716
RsaNI	GTAC	2 cut(s)	325, 715
RseI	CAYNNNNRTG	2 cut(s)	168, 793
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	451, 608, 805
Sau3AI	GATC	6 cut(s)	55, 205, 214, 472, 735, 862
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	101, 133
SfaNI	GCATC	2 cut(s)	107, 437
SmiMI	CAYNNNNRTG	2 cut(s)	168, 793
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	3 cut(s)	88, 421, 808
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	1 cut(s)	197
SstI	GAGCTC	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	383, 509, 618
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	88, 421, 808
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	386, 471
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	450, 607, 804
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	8 cut(s)	11, 66, 176, 189, 612, 617, 696, 840
TspRI	CASTG	2 cut(s)	386, 471
Van91I	CCANNNNNTGG	1 cut(s)	666
XapI	RAATTY	2 cut(s)	88, 421
XceI	RCATGY	2 cut(s)	224, 614
XspI	CTAG	1 cut(s)	197
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.