Rorug03G0112200

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005998
Physical Location & Seq
Reverse (-)
9062837 .. 9063802
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0112200.1

Sequence Viewer

Length: 966 bp
ATGACAATTCCTTTGTTCTCATGCCATTTCTTGATACTCATTTACTATGTTTCACTCAGTATCCATATGCTGGTGGTCTCTGGCCAATGTTCCAGCAATCAGCAGCAATCTTTGCTGCTCCAACTGAAGAACAGCCTGAATTTTGAGCCTGCATTATCCTCAAAGCTTGTGAAGTGGAACAATGTCTCTGATTATTGTTCTTGGCAAGGTGTCTCCTGCAAAGGAGGTTGTGTTACCCATCTCGACTTGAGCAGCGAATCGATTTCAGGTGAACTTGATAATTCAAGTGCTCTTTTCGGTCTGCAGTACATCGAACACCTGAATTTGGCGAATAATAACTTCAATTATACTCAAATTCCATCCCAGTTCAACAAGCTAGCCAGTTTGAATTATTTGAATCTGTCAAATGCTAGCTTTGCAGGGCAGATTCCAATTGAGATTTCGCACTTGACAAGGTTAGTGATTCTCGATTTGTCGACCTGGTACTTTCCCGGTCTTCCTTCGCTGAAACTTGAGCAACCAAATTTGAGATTGGTCATTGGAAACCTTTCGGAGATAAATGAACTTTACCTAGATGGTGTGAACATATCAGCACCGGAAACTCATTGGTCTCAAGCAATATCATCTTCATTGCCAAACTTGAGGGTATTGAGTCTGTCCAGTTGTAATCTTTCAGACCCTATTGATTCTTCTTTACAAAAGCTTCACTCGCTCTCAGTCATTCATCTAGAGAATAATTATTTCTCTTCTCAAGTTCCAGAATTCTTATCAAATTTCTCAAATTTGACTTCCTTGCGTCTCGGTTATTCCCGGTTAAATGGTACTTTTCCTGAGGCCATCTTCCTGGTTCCTACACTGGAGACCATTGACCTATCAAATAATGATCAGCTGCATGGTTCTTTACCAGAATTCAAGAATTCGGACCCTAGTTCTAAGCGGAACAAATTTTTCAGGGTTGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

321

Amino Acids

35.75

Weight (kDa)

5.67

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 73 1.2e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 89 - 291 5.4e-10 Leucine-rich repeat region
LRR_8 PF13855 237 - 295 3.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AccI GTMKAC 1 cut(s) 476
AciI CCGC 1 cut(s) 937
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 3 cut(s) 308, 485, 823
AfiI CCNNNNNNNGG 2 cut(s) 70, 325
AgsI TTSAA 6 cut(s) 285, 343, 370, 388, 397, 913
AjnI CCWGG 2 cut(s) 479, 843
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 5 cut(s) 166, 376, 414, 703, 889
AluI AGCT 5 cut(s) 166, 376, 414, 703, 889
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 6 cut(s) 82, 190, 217, 615, 803, 854
AoxI GGCC 2 cut(s) 82, 834
ApeKI GCWGC 4 cut(s) 103, 115, 252, 889
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 922
AsuC2I CCSGG 2 cut(s) 492, 811
AsuHPI GGTGA 1 cut(s) 281
AsuNHI GCTAGC 2 cut(s) 376, 410
AvaII GGWCC 1 cut(s) 922
AxyI CCTNAGG 1 cut(s) 831
BalI TGGCCA 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 102, 115, 264, 876
BccI CCATC 4 cut(s) 246, 367, 569, 845
BciT130I CCWGG 2 cut(s) 481, 845
BciVI GTATCC 1 cut(s) 71
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 2 cut(s) 492, 811
BcoDI GTCTC 6 cut(s) 82, 190, 217, 615, 803, 854
BfaI CTAG 5 cut(s) 377, 411, 572, 728, 927
BfmI CTRYAG 1 cut(s) 302
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 4 cut(s) 104, 116, 253, 890
BlsI GCNGC 4 cut(s) 105, 117, 254, 891
Bme1390I CCNGG 4 cut(s) 481, 492, 811, 845
Bme18I GGWCC 1 cut(s) 922
BmgT120I GGNCC 1 cut(s) 922
BmiI GGNNCC 2 cut(s) 849, 924
BmrFI CCNGG 4 cut(s) 481, 492, 811, 845
BmrI ACTGGG 1 cut(s) 358
BmtI GCTAGC 2 cut(s) 380, 414
BmuI ACTGGG 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 878
BpuEI CTTGAG 5 cut(s) 268, 533, 597, 661, 735
BpuMI CCSGG 2 cut(s) 492, 811
Bsa29I ATCGAT 1 cut(s) 260
BsaI GGTCTC 3 cut(s) 82, 615, 854
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 325
Bse1I ACTGG 4 cut(s) 364, 381, 660, 861
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 629
BseBI CCWGG 2 cut(s) 481, 845
BseCI ATCGAT 1 cut(s) 260
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 70, 325
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 3 cut(s) 70, 729, 822
BseNI ACTGG 4 cut(s) 364, 381, 660, 861
BseXI GCAGC 4 cut(s) 102, 115, 264, 876
BshFI GGCC 2 cut(s) 84, 836
BshVI ATCGAT 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 3 cut(s) 492, 596, 811
BslI CCNNNNNNNGG 2 cut(s) 70, 325
BsmAI GTCTC 6 cut(s) 82, 190, 217, 615, 803, 854
BsmBI CGTCTC 1 cut(s) 803
BsnI GGCC 2 cut(s) 84, 836
Bso31I GGTCTC 3 cut(s) 82, 615, 854
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 883
BspACI CCGC 1 cut(s) 937
BspANI GGCC 2 cut(s) 84, 836
BspCNI CTCAG 3 cut(s) 69, 728, 823
BspDI ATCGAT 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 849, 924
BspMAI CTGCAG 1 cut(s) 306
BspOI GCTAGC 2 cut(s) 380, 414
BspTNI GGTCTC 3 cut(s) 82, 615, 854
BsrDI GCAATG 1 cut(s) 629
BsrI ACTGG 4 cut(s) 364, 381, 660, 861
BssMI GATC 1 cut(s) 883
Bst2UI CCWGG 2 cut(s) 481, 845
Bst6I CTCTTC 1 cut(s) 751
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 3 cut(s) 150, 378, 412
BstDEI CTNAG 4 cut(s) 56, 715, 831, 933
BstF5I GGATG 1 cut(s) 359
BstKTI GATC 1 cut(s) 886
BstMAI GTCTC 6 cut(s) 82, 190, 217, 615, 803, 854
BstMBI GATC 1 cut(s) 883
BstMWI GCNNNNNNNGC 3 cut(s) 112, 416, 709
BstNI CCWGG 2 cut(s) 481, 845
BstSCI CCNGG 4 cut(s) 479, 490, 809, 843
BstSFI CTRYAG 1 cut(s) 302
BstV1I GCAGC 4 cut(s) 102, 115, 264, 876
BstV2I GAAGAC 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 844
Bsu15I ATCGAT 1 cut(s) 260
Bsu36I CCTNAGG 1 cut(s) 831
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 84, 836
BsuTUI ATCGAT 1 cut(s) 260
BtsCI GGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 854
Cac8I GCNNGC 3 cut(s) 150, 378, 412
Cfr13I GGNCC 1 cut(s) 922
ClaI ATCGAT 1 cut(s) 260
CseI GACGC 1 cut(s) 785
CsiI ACCWGGT 1 cut(s) 479
Csp6I GTAC 3 cut(s) 307, 484, 822
CviAII CATG 2 cut(s) 21, 893
CviQI GTAC 3 cut(s) 307, 484, 822
DdeI CTNAG 4 cut(s) 56, 715, 831, 933
DpnI GATC 1 cut(s) 885
DpnII GATC 1 cut(s) 883
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 751
EarI CTCTTC 1 cut(s) 751
Eco31I GGTCTC 3 cut(s) 82, 615, 854
Eco47I GGWCC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 831
EcoRI GAATTC 3 cut(s) 761, 908, 916
EcoRII CCWGG 2 cut(s) 479, 843
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 2 cut(s) 24, 896
FaiI YATR 7 cut(s) 22, 48, 66, 68, 348, 587, 894
FatI CATG 2 cut(s) 20, 892
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 4 cut(s) 104, 116, 253, 890
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 4 cut(s) 104, 116, 253, 890
FspBI CTAG 5 cut(s) 377, 411, 572, 728, 927
GluI GCNGC 4 cut(s) 104, 116, 253, 890
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 2 cut(s) 84, 836
HapII CCGG 3 cut(s) 492, 596, 811
HgaI GACGC 1 cut(s) 785
Hin1II CATG 2 cut(s) 24, 896
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HindIII AAGCTT 2 cut(s) 164, 701
HinfI GANTC 6 cut(s) 257, 397, 427, 463, 652, 686
HpaII CCGG 3 cut(s) 492, 596, 811
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 3 cut(s) 272, 477, 583
Hpy188I TCNGA 4 cut(s) 190, 553, 676, 922
Hpy188III TCNNGA 7 cut(s) 31, 242, 467, 728, 758, 830, 913
Hpy8I GTNNAC 3 cut(s) 272, 477, 583
HpyAV CCTTC 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 152, 219, 304, 419, 892
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 416, 709
HpyF3I CTNAG 4 cut(s) 56, 715, 831, 933
Hsp92II CATG 2 cut(s) 24, 896
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 1 cut(s) 883
LmnI GCTCC 1 cut(s) 123
Lsp1109I GCAGC 4 cut(s) 102, 115, 264, 876
MabI ACCWGGT 1 cut(s) 479
MaeI CTAG 5 cut(s) 377, 411, 572, 728, 927
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 885
MboI GATC 1 cut(s) 883
MboII GAAGA 6 cut(s) 139, 488, 618, 681, 738, 832
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 84
MlyI GAGTC 1 cut(s) 661
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 169, 218, 636, 826
Mox20I TGGCCA 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 547
MscI TGGCCA 1 cut(s) 84
MseI TTAA 1 cut(s) 815
Msp20I TGGCCA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 889
MspI CCGG 3 cut(s) 492, 596, 811
MspR9I CCNGG 4 cut(s) 481, 492, 811, 845
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 2 cut(s) 481, 845
MwoI GCNNNNNNNGC 3 cut(s) 112, 416, 709
NciI CCSGG 2 cut(s) 492, 811
NdeI CATATG 1 cut(s) 66
NdeII GATC 1 cut(s) 883
NheI GCTAGC 2 cut(s) 376, 410
NlaIII CATG 2 cut(s) 24, 896
NlaIV GGNNCC 2 cut(s) 849, 924
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 5 cut(s) 257, 397, 427, 463, 686
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 4 cut(s) 105, 117, 254, 891
PleI GAGTC 1 cut(s) 660
PpsI GAGTC 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 479, 843
PspGI CCWGG 2 cut(s) 479, 843
PspN4I GGNNCC 2 cut(s) 849, 924
PspPI GGNCC 1 cut(s) 922
PstI CTGCAG 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 889
RsaI GTAC 3 cut(s) 308, 485, 823
RsaNI GTAC 3 cut(s) 307, 484, 822
SalI GTCGAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 815
SatI GCNGC 4 cut(s) 104, 116, 253, 890
Sau3AI GATC 1 cut(s) 883
Sau96I GGNCC 1 cut(s) 922
SchI GAGTC 1 cut(s) 661
ScrFI CCNGG 4 cut(s) 481, 492, 811, 845
SduI GDGCHC 1 cut(s) 292
SexAI ACCWGGT 1 cut(s) 479
SfcI CTRYAG 1 cut(s) 302
SinI GGWCC 1 cut(s) 922
SmlI CTYRAG 5 cut(s) 247, 512, 612, 640, 750
SmoI CTYRAG 5 cut(s) 247, 512, 612, 640, 750
SsiI CCGC 1 cut(s) 937
SspMI CTAG 5 cut(s) 377, 411, 572, 728, 927
StyD4I CCNGG 4 cut(s) 479, 490, 809, 843
TaqI TCGA 5 cut(s) 243, 260, 312, 468, 476
TaqII GACCGA 1 cut(s) 287
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 5 cut(s) 257, 397, 427, 463, 686
Tru1I TTAA 1 cut(s) 815
Tru9I TTAA 1 cut(s) 815
TscAI CASTG 1 cut(s) 861
TseI GCWGC 4 cut(s) 103, 115, 252, 889
TspDTI ATGAA 3 cut(s) 576, 618, 713
TspRI CASTG 1 cut(s) 861
Van91I CCANNNNNTGG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 922
XbaI TCTAGA 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 5 cut(s) 377, 411, 572, 728, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.