FvH4_6g16750

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005998
Physical Location & Seq
Reverse (-)
10634110 .. 10637472
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16750.t1

Sequence Viewer

Length: 888 bp
ATGCAGATTGAGAAAATGGAGGGCGGATTCGAGACCCAGGTGGGTTTTGGGAAGGAACATTACGAGCAGTCTGTCGTTAGGAAGAAGGGATCTGGGCAATTGGGGTGCATGCATTACAGACGGAGATGCAAGATCATAGCTCCTTGTTGTGATGAGGTTTTCGACTGCAGGCATTGCCATAATGAATCCAAGAACTCGTTGGCTGTTGAACCCGTTAATCGCCATGATGTTCCTCGCCATGATCTCAAGAAGGTCATCTGTTCAATGTGCAGCACAGAACAAGATGTTCAGCAGTACTGTAGGCAATGTGGGGTTTGCATGGGAAACTACTTTTGCCCCAAATGCAAGTTTTTTGATGATGACGTTTCGAAAAAGCAGTATCATTGTGACCAATGCGGTATCTGCAGAACCGGAGGTGCGGAGAACTTTTTCCACTGTGACAGATGTGGATGCTGTTACTCAACAGTGCTGAAGGACTCACACAATTGTGTGGAAAAAGCAATGCATCACAATTGTGCTGTGTGCTTTGAGTTTCTTTTCGATACAATGGCAGACATTACTGTCTTACCATGTGGGCACACTATACATTTGGAATGTTTAAAAGAGATGGAGCGGCATTTCCAGTATTCTTGCCCAGTTTGTTCAAAATCGTACTGTGATATGTCACGTGTGTGGGCTAAACTGGACGAGGAGATTGCCGCAACTCCAATGCCTCCAATGTATGCCAATAAGATGGTCTGGATCCTCTGCAATGATTGTGGGCAATCCTCGGAGGTAAATTTTCACATGGTGGCACACAAATGCCTCAACTGCAAATCCTACAATACGAGGCAGACACAAGGGGGGCCAGCGTCATGCTCATCAAGGGTTTCACAGATGGTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

296

Amino Acids

33.72

Weight (kDa)

7.4

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 36 - 110 1.6e-17 CHY zinc finger
zf-RING_2 PF13639 171 - 214 6.3e-07 Ring finger domain
zf-RING_5 PF14634 171 - 216 8.6e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 172 - 212 5.2e-07 RING-type zinc-finger
zinc_ribbon_6 PF14599 219 - 277 2.8e-27 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 613
AciI CCGC 5 cut(s) 24, 396, 419, 613, 699
AclWI GGATC 3 cut(s) 97, 736, 749
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 1 cut(s) 491
AcvI CACGTG 1 cut(s) 668
AdeI CACNNNGTG 1 cut(s) 790
AfaI GTAC 2 cut(s) 296, 653
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 3 cut(s) 209, 264, 645
AjnI CCWGG 1 cut(s) 36
AleI CACNNNNGTG 3 cut(s) 486, 513, 670
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 3 cut(s) 97, 736, 749
AoxI GGCC 1 cut(s) 845
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 778
Asp700I GAANNNNTTC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 845
AsuII TTCGAA 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 579
BamHI GGATCC 1 cut(s) 741
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
BbrPI CACGTG 1 cut(s) 668
BbvI GCAGC 1 cut(s) 282
BccI CCATC 3 cut(s) 601, 727, 871
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 26
BfmI CTRYAG 3 cut(s) 166, 298, 403
BisI GCNGC 3 cut(s) 271, 614, 699
BlsI GCNGC 3 cut(s) 272, 615, 700
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 845
BmiI GGNNCC 2 cut(s) 743, 846
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 3 cut(s) 116, 440, 514
BmuI ACTGGG 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 36, 768
BsaWI WCCGGW 1 cut(s) 410
Bse1I ACTGG 3 cut(s) 622, 635, 687
Bse3DI GCAATG 4 cut(s) 172, 311, 507, 757
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 36, 768
BseGI GGATG 1 cut(s) 455
BseMI GCAATG 4 cut(s) 172, 311, 507, 757
BseNI ACTGG 3 cut(s) 622, 635, 687
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 579
BseXI GCAGC 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 289
BshFI GGCC 1 cut(s) 847
BsiSI CCGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 847
Bso31I GGTCTC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 4 cut(s) 89, 132, 241, 741
BspACI CCGC 5 cut(s) 24, 396, 419, 613, 699
BspANI GGCC 1 cut(s) 847
BspLI GGNNCC 2 cut(s) 743, 846
BspMAI CTGCAG 2 cut(s) 170, 407
BspPI GGATC 3 cut(s) 97, 736, 749
BspT104I TTCGAA 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 613
BsrDI GCAATG 4 cut(s) 172, 311, 507, 757
BsrI ACTGG 3 cut(s) 622, 635, 687
BssECI CCNNGG 2 cut(s) 36, 768
BssMI GATC 4 cut(s) 89, 132, 241, 741
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 5 cut(s) 299, 437, 466, 562, 656
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 110, 170, 849
BstF5I GGATG 1 cut(s) 455
BstKTI GATC 4 cut(s) 92, 135, 244, 744
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 4 cut(s) 89, 132, 241, 741
BstMWI GCNNNNNNNGC 4 cut(s) 174, 342, 402, 810
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 3 cut(s) 166, 298, 403
BstSLI GKGCMC 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 89, 741
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 2 cut(s) 89, 741
BsuRI GGCC 1 cut(s) 847
BtsCI GGATG 1 cut(s) 455
BtsIMutI CAGTG 2 cut(s) 433, 471
Cac8I GCNNGC 3 cut(s) 110, 170, 849
Cfr13I GGNCC 1 cut(s) 845
CseI GACGC 1 cut(s) 840
Csp6I GTAC 2 cut(s) 295, 652
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 7 cut(s) 109, 224, 239, 319, 570, 787, 855
CviJI RGCY 4 cut(s) 140, 203, 677, 847
CviKI_1 RGCY 4 cut(s) 140, 203, 677, 847
CviQI GTAC 2 cut(s) 295, 652
DpnI GATC 4 cut(s) 91, 134, 243, 743
DpnII GATC 4 cut(s) 89, 132, 241, 741
DraI TTTAAA 1 cut(s) 600
DraIII CACNNNGTG 1 cut(s) 790
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EciI GGCGGA 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 491
Eco72I CACGTG 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 36
EcoT22I ATGCAT 2 cut(s) 114, 507
FaeI CATG 7 cut(s) 112, 227, 242, 322, 573, 790, 858
FatI CATG 7 cut(s) 108, 223, 238, 318, 569, 786, 854
Fnu4HI GCNGC 3 cut(s) 271, 614, 699
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 3 cut(s) 271, 614, 699
GluI GCNGC 3 cut(s) 271, 614, 699
HaeIII GGCC 1 cut(s) 847
HapII CCGG 1 cut(s) 411
HgaI GACGC 1 cut(s) 840
Hin1II CATG 7 cut(s) 112, 227, 242, 322, 573, 790, 858
HinfI GANTC 3 cut(s) 27, 185, 476
HpaII CCGG 1 cut(s) 411
Hpy188I TCNGA 1 cut(s) 772
Hpy188III TCNNGA 3 cut(s) 31, 247, 739
HpyAV CCTTC 4 cut(s) 46, 79, 244, 466
HpyCH4III ACNGT 5 cut(s) 299, 437, 466, 562, 656
HpyCH4IV ACGT 2 cut(s) 363, 667
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 342, 402, 810
HpySE526I ACGT 2 cut(s) 363, 667
Hsp92II CATG 7 cut(s) 112, 227, 242, 322, 573, 790, 858
Kzo9I GATC 4 cut(s) 89, 132, 241, 741
LmnI GCTCC 2 cut(s) 145, 610
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 3 cut(s) 116, 440, 514
MaeII ACGT 2 cut(s) 363, 667
MaeIII GTNAC 4 cut(s) 386, 437, 455, 663
MalI GATC 4 cut(s) 91, 134, 243, 743
MbiI CCGCTC 1 cut(s) 613
MboI GATC 4 cut(s) 89, 132, 241, 741
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 3 cut(s) 98, 484, 511
MflI RGATCY 2 cut(s) 89, 741
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 4 cut(s) 98, 484, 511, 778
MlyI GAGTC 1 cut(s) 470
Mph1103I ATGCAT 2 cut(s) 114, 507
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 2 cut(s) 216, 599
MslI CAYNNNNRTG 4 cut(s) 486, 513, 670, 799
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 3 cut(s) 98, 484, 511
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 174, 342, 402, 810
NdeII GATC 4 cut(s) 89, 132, 241, 741
NlaIII CATG 7 cut(s) 112, 227, 242, 322, 573, 790, 858
NlaIV GGNNCC 2 cut(s) 743, 846
NmuCI GTSAC 3 cut(s) 386, 437, 663
NsiI ATGCAT 2 cut(s) 114, 507
NspI RCATGY 1 cut(s) 112
NspV TTCGAA 1 cut(s) 368
OliI CACNNNNGTG 3 cut(s) 486, 513, 670
PaeI GCATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 27, 185
PkrI GCNGC 3 cut(s) 272, 615, 700
PleI GAGTC 1 cut(s) 470
PmaCI CACGTG 1 cut(s) 668
PmlI CACGTG 1 cut(s) 668
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 36
PspCI CACGTG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 743, 846
PspPI GGNCC 1 cut(s) 845
PstI CTGCAG 2 cut(s) 170, 407
PsuI RGATCY 2 cut(s) 89, 741
RsaI GTAC 2 cut(s) 296, 653
RsaNI GTAC 2 cut(s) 295, 652
RseI CAYNNNNRTG 4 cut(s) 486, 513, 670, 799
SaqAI TTAA 2 cut(s) 216, 599
SatI GCNGC 3 cut(s) 271, 614, 699
Sau3AI GATC 4 cut(s) 89, 132, 241, 741
Sau96I GGNCC 1 cut(s) 845
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 579
SetI ASST 9 cut(s) 42, 142, 159, 255, 366, 418, 670, 777, 887
SfaNI GCATC 3 cut(s) 116, 440, 514
SfcI CTRYAG 3 cut(s) 166, 298, 403
SfuI TTCGAA 1 cut(s) 368
SmiMI CAYNNNNRTG 4 cut(s) 486, 513, 670, 799
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SphI GCATGC 1 cut(s) 112
Sse9I AATT 4 cut(s) 98, 484, 511, 778
SsiI CCGC 5 cut(s) 24, 396, 419, 613, 699
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 5 cut(s) 299, 437, 466, 562, 656
TaiI ACGT 2 cut(s) 366, 670
TaqI TCGA 4 cut(s) 30, 162, 368, 540
TasI AATT 4 cut(s) 98, 484, 511, 778
TatI WGTACW 1 cut(s) 294
TauI GCSGC 2 cut(s) 616, 701
TfiI GAWTC 2 cut(s) 27, 185
Tru1I TTAA 2 cut(s) 216, 599
Tru9I TTAA 2 cut(s) 216, 599
TscAI CASTG 2 cut(s) 440, 471
TseFI GTSAC 3 cut(s) 386, 437, 663
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 3 cut(s) 386, 437, 663
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 440, 471
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 2 cut(s) 44, 196
XmnI GAANNNNTTC 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 296
Zsp2I ATGCAT 2 cut(s) 114, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.