Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005998

Physical Location & Seq

Genomic Coordinates Forward (+)

60707731 .. 60710436

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAAACGATGCCCTGTTTTTATCGTTCAGAAAGAAAGGAGTTTGGTCATGAAGATCATTCGTCTCTAGCAGAGCTTGGAGCTGGGAATTTTGGGTGCTCGCATTATAAAAGAAGATGCAAAATCAGAGCTCCTTGTTGTAACGAGGTTTATGATTGCCGGCATTGCCATGATGAAGCAAAGGACTCCCTAGATACTGATCCCCTTGATCGACATGTCATTTCTCGTCACGAGGTTAAAAAGGTCATCTGCTGTCTGTGTGGCATAGAACAAGATGTTCAACAACATTGCGTTAGCTGTGGAGTTTGCATGGGAAAGTACTTTTGCGCGATATGCAACTTCTATGATGATGATGTTTCAAAAGATATATACCATTGTGATAAATGTGGAATATGCAGAATCGGAGGGGGAGAAAATTTCTTCCATTGTGAGAAATGCGGATGCTGCTACCCTAAGTCAGTGAAAGATCATCGCTGTATAGAAAGGGCAATGCACCATAACTGTCCTGTTTGTTTTGAGTTTCTATTTGATTCAAGGAGAGATATTAGCATATTACGCTGTGGACACACAATACATTGTGAATGTCTGAAAGAGATGAGGCTGCATGCACAGTATTCATGCCCTATCTGCTCCAAGTCCGTCTATGATATGTCCAACTTGTGGAAAAAGCTTGATGAACTGGTTGCCTCAACTCCAATGCCTCATGCGTACAGAACCAAAATGGTGGGGATCCTCTGCAATGATTGTGGAGCTAAAGGCGAAGTCAGTTTTCACATTGTCGCACACAAATGCCTCAGCTGCAATTCTTACAATACTAAACAGACACAAGGAGGTCATGGTGCTTCATGCTTATCAGATCATGTGGCTGAGATAGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010119 GO:0050789 GO:0050794 GO:0065007 GO:1902456

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

293

Amino Acids

33.31

Weight (kDa)

7.0

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	33 - 107	3.1e-17	CHY zinc finger
zf-RING_5	PF14634	167 - 212	6.1e-07	zinc-RING finger domain
zf-RING_2	PF13639	167 - 210	2.9e-06	Ring finger domain
zinc_ribbon_6	PF14599	216 - 273	2.8e-25	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22920 AT5G22920
fragaria_vesca	FvH4_6g16750
malus_domestica	MD12G1107600.v1.1
prunus_persica	Prupe.7G126100_v2.0.a1
pyrus_communis	pycom04g08360 pycom12g10770
rosa_chinensis	RchiOBHm_Chr3g0470691 RchiOBHm_Chr5g0056891
rosa_laevigata	RLG00000024247
rosa_multiflora	Rmu_sc0006168.1_g000024
rosa_roxburghii	Rroxscaffold_1G00023410 Rroxscaffold_6G00410580
rosa_rugosa	Rorug03G0112100 Rorug03G0112200 Rorug05G0303400 Rorug05G0303500
rosa_samantha	Rh3AG161700 Rh3BG186200 Rh3CG176600 Rh3DG188900 Rh5AG373400 Rh5CG407600 Rh5DG397700
rosa_wichuraiana	Rw0G004620 Rw3G015250 Rw5G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccII	CGCG	1 cut(s)	329
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	3 cut(s)	194, 724, 737
AcsI	RAATTY	2 cut(s)	88, 415
AfaI	GTAC	2 cut(s)	320, 710
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	281, 360, 534
AluBI	AGCT	7 cut(s)	76, 83, 131, 297, 670, 752, 798
AluI	AGCT	7 cut(s)	76, 83, 131, 297, 670, 752, 798
Alw21I	GWGCWC	2 cut(s)	101, 133
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	3 cut(s)	194, 724, 737
ApeKI	GCWGC	3 cut(s)	444, 601, 798
ApoI	RAATTY	2 cut(s)	88, 415
AspLEI	GCGC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	101, 133
BbvCI	CCTCAGC	1 cut(s)	794
BbvI	GCAGC	3 cut(s)	431, 588, 785
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	68, 191
BisI	GCNGC	3 cut(s)	445, 602, 799
BlsI	GCNGC	3 cut(s)	446, 603, 800
BmcAI	AGTACT	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	731
BmsI	GCATC	2 cut(s)	107, 431
Bpu10I	CCTNAGC	1 cut(s)	794
BsaBI	GATNNNNATC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	4 cut(s)	163, 286, 495, 745
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	4 cut(s)	163, 286, 495, 745
BseMII	CTCAG	2 cut(s)	808, 858
BseNI	ACTGG	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	431, 588, 785
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	101, 133
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	101, 133
Bsp143I	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
BspACI	CCGC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	807, 859
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	731
BspPI	GGATC	3 cut(s)	194, 724, 737
BsrDI	GCAATG	4 cut(s)	163, 286, 495, 745
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	503, 612
BstC8I	GCNNGC	3 cut(s)	101, 161, 606
BstDEI	CTNAG	3 cut(s)	453, 794, 867
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	6 cut(s)	58, 202, 211, 469, 732, 859
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
BstMWI	GCNNNNNNNGC	6 cut(s)	165, 333, 444, 555, 627, 798
BstNSI	RCATGY	2 cut(s)	218, 608
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	431, 588, 785
BstX2I	RGATCY	1 cut(s)	729
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	729
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	101, 161, 606
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	319, 709
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviJI	RGCY	9 cut(s)	76, 83, 131, 297, 601, 670, 752, 798, 866
CviKI_1	RGCY	9 cut(s)	76, 83, 131, 297, 601, 670, 752, 798, 866
CviQI	GTAC	2 cut(s)	319, 709
DdeI	CTNAG	3 cut(s)	453, 794, 867
DpnI	GATC	6 cut(s)	57, 201, 210, 468, 731, 858
DpnII	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	445, 602, 799
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	445, 602, 799
FspBI	CTAG	2 cut(s)	68, 191
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	445, 602, 799
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	3 cut(s)	185, 399, 530
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	5 cut(s)	31, 128, 404, 588, 856
Hpy188III	TCNNGA	2 cut(s)	50, 230
Hpy8I	GTNNAC	1 cut(s)	563
HpyCH4III	ACNGT	2 cut(s)	503, 612
HpyCH4V	TGCA	9 cut(s)	120, 309, 336, 396, 493, 604, 608, 738, 801
HpyF10VI	GCNNNNNNNGC	6 cut(s)	165, 333, 444, 555, 627, 798
HpyF3I	CTNAG	3 cut(s)	453, 794, 867
HspAI	GCGC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
LmnI	GCTCC	4 cut(s)	80, 136, 635, 749
LpnPI	CCDG	5 cut(s)	28, 69, 173, 519, 665
Lsp1109I	GCAGC	3 cut(s)	431, 588, 785
LweI	GCATC	2 cut(s)	107, 431
MaeI	CTAG	2 cut(s)	68, 191
MaeIII	GTNAC	2 cut(s)	140, 227
MalI	GATC	6 cut(s)	57, 201, 210, 468, 731, 858
MboI	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
MboII	GAAGA	3 cut(s)	65, 126, 412
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	2 cut(s)	101, 133
MluCI	AATT	3 cut(s)	88, 415, 802
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	9 cut(s)	139, 226, 398, 591, 697, 711, 743, 803, 824
MroNI	GCCGGC	1 cut(s)	159
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	168, 787
MspA1I	CMGCKG	1 cut(s)	798
MspI	CCGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	6 cut(s)	165, 333, 444, 555, 627, 798
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
NgoMIV	GCCGGC	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	731
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	2 cut(s)	218, 608
PaeI	GCATGC	1 cut(s)	608
PagI	TCATGA	1 cut(s)	49
PciI	ACATGT	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	399, 530
PflMI	CCANNNNNTGG	1 cut(s)	660
PkrI	GCNGC	3 cut(s)	446, 603, 800
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	729
PvuII	CAGCTG	1 cut(s)	798
RsaI	GTAC	2 cut(s)	320, 710
RsaNI	GTAC	2 cut(s)	319, 709
RseI	CAYNNNNRTG	2 cut(s)	168, 787
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	445, 602, 799
Sau3AI	GATC	6 cut(s)	55, 199, 208, 466, 729, 856
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	101, 133
SfaNI	GCATC	2 cut(s)	107, 431
SmiMI	CAYNNNNRTG	2 cut(s)	168, 787
SphI	GCATGC	1 cut(s)	608
Sse9I	AATT	3 cut(s)	88, 415, 802
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	2 cut(s)	68, 191
SstI	GAGCTC	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	503, 612
TaqI	TCGA	1 cut(s)	211
TasI	AATT	3 cut(s)	88, 415, 802
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	399, 530
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	444, 601, 798
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	5 cut(s)	66, 189, 606, 690, 834
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	88, 415
XceI	RCATGY	2 cut(s)	218, 608
XspI	CTAG	2 cut(s)	68, 191
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.