Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005998

Physical Location & Seq

Genomic Coordinates Forward (+)

63494770 .. 63497063

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG373400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAACGATGCCCTGTTGTCATCGTTCAGAAAGAAAGGAGTTTGGTCATGAAGATCATTCGTCTCTAACAGAACTTGGAGCTGGGAATTTTGGGTGCTCGCATTATAAAAGAAGATGCAAAATCAGAGCTCCTTGTTGTAACGAGGTTTATGATTGCCGGCATTGCCATGATGAAGCAAAGGACTCCCTAGATACTGATCCCCTTGATCGACATGTCATTTCACGTCACGAGGTTAAAAAGGTCATCTGCTGTCTGTGTGGCATAGAACAAGATGTTCAACAACATTGCGTTAGCTGTGGAGTTTGCATGGGAAAGTACTTTTGCGCGATATGCAACTTCTATGATGATGATGTTTCAAAAGATATATACCACTGTGATAAATGTGGAATATGCAGAATCGGAGGGGGAGAAAATTTCTTCCATTGTGAGAAATGCGGATGCTGCTACCCTAAGTCAGTGAAAGATCATCGCTGTATAGAAAGGGCAATGCACCATAACTGTCCTGTTTGTTTTGAGTTTCTATTTGATTCAAGGAGAGATATTAGCATATTACGCTGTGGACACACAATACATTGTGAATGTCTGAAAGAGATGAGGCTGCATGCACAGTATTCATGCCCTATCTGCTCAAAGTCCATCTATGATATGTCCAACTTGTGGAAAAAGCTTGATGAACTGGTTGCCTCAACTCCAATGCCTCATGCGTATGTTAATTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010119 GO:0050789 GO:0050794 GO:0065007 GO:1902456

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

241

Amino Acids

27.73

Weight (kDa)

6.63

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	33 - 107	2.1e-17	CHY zinc finger
zf-RING_5	PF14634	167 - 212	4.5e-07	zinc-RING finger domain
zf-RING_2	PF13639	167 - 210	2.4e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22920 AT5G22920
fragaria_vesca	FvH4_6g16750
malus_domestica	MD12G1107600.v1.1
prunus_persica	Prupe.7G126100_v2.0.a1
pyrus_communis	pycom04g08360 pycom12g10770
rosa_chinensis	RchiOBHm_Chr3g0470691 RchiOBHm_Chr5g0056891
rosa_laevigata	RLG00000024247
rosa_multiflora	Rmu_sc0006168.1_g000024
rosa_roxburghii	Rroxscaffold_1G00023410 Rroxscaffold_6G00410580
rosa_rugosa	Rorug03G0112100 Rorug03G0112200 Rorug05G0303400 Rorug05G0303500
rosa_samantha	Rh3AG161700 Rh3BG186200 Rh3CG176600 Rh3DG188900 Rh5AG373400 Rh5CG407600 Rh5DG397700
rosa_wichuraiana	Rw0G004620 Rw3G015250 Rw5G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccII	CGCG	1 cut(s)	329
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	88, 415
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	281, 360, 534
AjiI	CACGTC	1 cut(s)	227
AluBI	AGCT	4 cut(s)	83, 131, 297, 670
AluI	AGCT	4 cut(s)	83, 131, 297, 670
Alw21I	GWGCWC	2 cut(s)	101, 133
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	444, 601
ApoI	RAATTY	2 cut(s)	88, 415
AspLEI	GCGC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	101, 133
BbvI	GCAGC	2 cut(s)	431, 588
BccI	CCATC	1 cut(s)	647
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	445, 602
BlsI	GCNGC	2 cut(s)	446, 603
BmcAI	AGTACT	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	227
BmsI	GCATC	2 cut(s)	107, 431
BsaBI	GATNNNNATC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	3 cut(s)	163, 286, 495
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	3 cut(s)	163, 286, 495
BseNI	ACTGG	1 cut(s)	684
BseXI	GCAGC	2 cut(s)	431, 588
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	101, 133
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	101, 133
Bsp143I	GATC	4 cut(s)	55, 199, 208, 466
BspACI	CCGC	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	49
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	3 cut(s)	163, 286, 495
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	4 cut(s)	55, 199, 208, 466
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	377, 503, 612
BstC8I	GCNNGC	3 cut(s)	101, 161, 606
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	58, 202, 211, 469
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	4 cut(s)	55, 199, 208, 466
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 333, 444, 555, 627
BstNSI	RCATGY	2 cut(s)	218, 608
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	431, 588
BtgZI	GCGATG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	373, 465
Cac8I	GCNNGC	3 cut(s)	101, 161, 606
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	8 cut(s)	50, 170, 215, 310, 605, 618, 704, 723
CviJI	RGCY	5 cut(s)	83, 131, 297, 601, 670
CviKI_1	RGCY	5 cut(s)	83, 131, 297, 601, 670
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	4 cut(s)	57, 201, 210, 468
DpnII	GATC	4 cut(s)	55, 199, 208, 466
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	8 cut(s)	53, 173, 218, 313, 608, 621, 707, 726
FatI	CATG	8 cut(s)	49, 169, 214, 309, 604, 617, 703, 722
Fnu4HI	GCNGC	2 cut(s)	445, 602
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	445, 602
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	445, 602
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	8 cut(s)	53, 173, 218, 313, 608, 621, 707, 726
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	3 cut(s)	185, 399, 530
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	4 cut(s)	31, 128, 404, 588
Hpy188III	TCNNGA	2 cut(s)	50, 230
Hpy8I	GTNNAC	1 cut(s)	563
HpyCH4III	ACNGT	3 cut(s)	377, 503, 612
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	7 cut(s)	120, 309, 336, 396, 493, 604, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 333, 444, 555, 627
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	8 cut(s)	53, 173, 218, 313, 608, 621, 707, 726
HspAI	GCGC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	55, 199, 208, 466
LmnI	GCTCC	2 cut(s)	80, 136
LpnPI	CCDG	5 cut(s)	28, 69, 173, 519, 665
Lsp1109I	GCAGC	2 cut(s)	431, 588
LweI	GCATC	2 cut(s)	107, 431
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	140, 227
MalI	GATC	4 cut(s)	57, 201, 210, 468
MboI	GATC	4 cut(s)	55, 199, 208, 466
MboII	GAAGA	3 cut(s)	65, 126, 412
MhlI	GDGCHC	2 cut(s)	101, 133
MluCI	AATT	3 cut(s)	88, 415, 715
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	6 cut(s)	139, 226, 398, 591, 697, 711
MroNI	GCCGGC	1 cut(s)	159
MseI	TTAA	2 cut(s)	237, 714
MslI	CAYNNNNRTG	2 cut(s)	168, 708
MspI	CCGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	5 cut(s)	165, 333, 444, 555, 627
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	4 cut(s)	55, 199, 208, 466
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	8 cut(s)	53, 173, 218, 313, 608, 621, 707, 726
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	2 cut(s)	218, 608
PaeI	GCATGC	1 cut(s)	608
PagI	TCATGA	1 cut(s)	49
PciI	ACATGT	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	399, 530
PflMI	CCANNNNNTGG	1 cut(s)	660
PkrI	GCNGC	2 cut(s)	446, 603
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	168, 708
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	237, 714
SatI	GCNGC	2 cut(s)	445, 602
Sau3AI	GATC	4 cut(s)	55, 199, 208, 466
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	101, 133
SetI	ASST	8 cut(s)	85, 133, 150, 229, 237, 246, 299, 672
SfaNI	GCATC	2 cut(s)	107, 431
SmiMI	CAYNNNNRTG	2 cut(s)	168, 708
SphI	GCATGC	1 cut(s)	608
Sse9I	AATT	3 cut(s)	88, 415, 715
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	377, 503, 612
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	211
TasI	AATT	3 cut(s)	88, 415, 715
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	399, 530
Tru1I	TTAA	2 cut(s)	237, 714
Tru9I	TTAA	2 cut(s)	237, 714
TscAI	CASTG	2 cut(s)	380, 465
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	444, 601
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	4 cut(s)	66, 189, 606, 690
TspRI	CASTG	2 cut(s)	380, 465
Van91I	CCANNNNNTGG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	88, 415
XceI	RCATGY	2 cut(s)	218, 608
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.