Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006168.1

Orthogroup ID

OG0005998

Physical Location & Seq

Genomic Coordinates Forward (+)

67587 .. 70252

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006168.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgtcgaccggccaaagctggcgtggcgcctcgccaacaggttcatataaaaaaggggaagaaggaaaccatcgaatttatttaatatatcagcttctgagggctttccactctctctctctttctctttctggtaataggtgggttttggaggaaatggagggcggatttttggagacccaagtgactgttggcaaggaacattcttgtgtggatgaacagtctgtcagggagaagggacctggggaatttgggtgcatgcattacagacggagatgcaagatcagagcaccttgttgtgatgagattttcgactgcaggcattgccataacgaagccaagaatgctttggaagttgaaccagttgatcgccatgatattcctcgccatgatctgaaaagggtcatctgttcattgtgcaacacagaacaagatgttcaacagcactgtagccaatgtggggtttgcatgggaaactacttttgccccaaatgcaagttttttgatgatgacgtttcgaaaaagcagtatcattgtgatcaatgcggcatctgcagaaccggaggtgcggagaactttttccactgtgacagatgtgggtgctgttactcaacagtgctgaaggattcacacaattgtgtggaaaaagcaatgcatcacaattgccctgtgtgctttgagtttctttttgatacgacagcagacattactgtcttaccatgtgggcacactatacatttggaatgtgtgaaagagatggagcggcattttcagtattcttgcccagtttgctcaaaatcgtactgtgatatgtcacgtgtgtgggaaaaactggaccacgagattgatgcgactccaatgcctccgatgtatcagaataagatggtctggatcctctgcaatgattgtggacaaacgtcagaggtaaattttcacattgtggcactcaaatgcctcaaatgcaaatcctacaatacgaggcagacacaaagagggccagcatcatgctcatcaagggtttcagagatggtgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

345

Amino Acids

39.56

Weight (kDa)

6.66

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22920 AT5G22920
fragaria_vesca	FvH4_6g16750
malus_domestica	MD12G1107600.v1.1
prunus_persica	Prupe.7G126100_v2.0.a1
pyrus_communis	pycom04g08360 pycom12g10770
rosa_chinensis	RchiOBHm_Chr3g0470691 RchiOBHm_Chr5g0056891
rosa_laevigata	RLG00000024247
rosa_multiflora	Rmu_sc0006168.1_g000024
rosa_roxburghii	Rroxscaffold_1G00023410 Rroxscaffold_6G00410580
rosa_rugosa	Rorug03G0112100 Rorug03G0112200 Rorug05G0303400 Rorug05G0303500
rosa_samantha	Rh3AG161700 Rh3BG186200 Rh3CG176600 Rh3DG188900 Rh5AG373400 Rh5CG407600 Rh5DG397700
rosa_wichuraiana	Rw0G004620 Rw3G015250 Rw5G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	165, 546, 569, 763
AclWI	GGATC	2 cut(s)	886, 899
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	3 cut(s)	75, 248, 928
AcuI	CTGAAG	1 cut(s)	641
AcvI	CACGTG	1 cut(s)	818
AcyI	GRCGYC	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	940
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	1 cut(s)	460
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	2 cut(s)	359, 440
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	2 cut(s)	636, 820
AluBI	AGCT	2 cut(s)	18, 94
AluI	AGCT	2 cut(s)	18, 94
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	886, 899
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	10, 995
ApoI	RAATTY	3 cut(s)	75, 248, 928
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	239, 835, 995
AsuII	TTCGAA	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	239, 835
BaeGI	GKGCMC	1 cut(s)	729
BamHI	GGATCC	1 cut(s)	891
BanI	GGYRCC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	839
BbrPI	CACGTG	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	292
BccI	CCATC	4 cut(s)	78, 751, 877, 1021
BcgI	CGANNNNNNTGC	4 cut(s)	830, 841, 864, 875
BciT130I	CCWGG	1 cut(s)	243
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	170
BfmI	CTRYAG	3 cut(s)	316, 448, 553
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	547, 764
BlsI	GCNGC	2 cut(s)	548, 765
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	239, 835
BmgT120I	GGNCC	3 cut(s)	239, 835, 995
BmiI	GGNNCC	3 cut(s)	28, 240, 893
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	5 cut(s)	266, 558, 664, 838, 1010
BmuI	ACTGGG	1 cut(s)	779
BoxI	GACNNNNGTC	1 cut(s)	916
Bpu14I	TTCGAA	1 cut(s)	518
BsaAI	YACGTR	1 cut(s)	818
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	362, 785, 837
Bse3DI	GCAATG	3 cut(s)	322, 657, 907
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	3 cut(s)	322, 657, 907
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	3 cut(s)	362, 785, 837
BseSI	GKGCMC	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	12, 997
BshNI	GGYRCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	9, 561
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	12, 997
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	292, 729
Bsp143I	GATC	5 cut(s)	282, 367, 391, 538, 891
BspACI	CCGC	4 cut(s)	165, 546, 569, 763
BspANI	GGCC	2 cut(s)	12, 997
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	28, 240, 893
BspMAI	CTGCAG	2 cut(s)	320, 557
BspPI	GGATC	2 cut(s)	886, 899
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	763
BsrDI	GCAATG	3 cut(s)	322, 657, 907
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	362, 785, 837
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	282, 367, 391, 538, 891
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	839
Bst2BI	CACGAG	1 cut(s)	839
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	7 cut(s)	190, 222, 449, 587, 616, 712, 806
BstACI	GRCGYC	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	818
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	20, 260, 320, 999
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	285, 370, 394, 541, 894
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	5 cut(s)	282, 367, 391, 538, 891
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 324, 344, 492, 552, 672, 789, 960
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	262
BstPAI	GACNNNNGTC	1 cut(s)	916
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	3 cut(s)	316, 448, 553
BstSLI	GKGCMC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	891
BstYI	RGATCY	1 cut(s)	891
BsuRI	GGCC	2 cut(s)	12, 997
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	3 cut(s)	445, 583, 621
Cac8I	GCNNGC	4 cut(s)	20, 260, 320, 999
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	239, 835, 995
Csp6I	GTAC	1 cut(s)	802
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	6 cut(s)	259, 374, 389, 469, 720, 1005
CviJI	RGCY	7 cut(s)	12, 18, 94, 104, 338, 453, 997
CviKI_1	RGCY	7 cut(s)	12, 18, 94, 104, 338, 453, 997
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	1 cut(s)	98
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	5 cut(s)	284, 369, 393, 540, 893
DpnII	GATC	5 cut(s)	282, 367, 391, 538, 891
DraIII	CACNNNGTG	1 cut(s)	940
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
EaeI	YGGCCR	1 cut(s)	10
EciI	GGCGGA	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	239, 835
Eco57I	CTGAAG	1 cut(s)	641
Eco72I	CACGTG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	241
EcoT22I	ATGCAT	2 cut(s)	264, 657
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	6 cut(s)	262, 377, 392, 472, 723, 1008
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	6 cut(s)	258, 373, 388, 468, 719, 1004
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	547, 764
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	547, 764
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	547, 764
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	12, 997
HapII	CCGG	2 cut(s)	9, 561
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	262, 377, 392, 472, 723, 1008
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	626, 853
HpaII	CCGG	2 cut(s)	9, 561
Hpy166II	GTNNAC	2 cut(s)	6, 911
Hpy188I	TCNGA	7 cut(s)	99, 287, 396, 867, 876, 922, 1024
Hpy188III	TCNNGA	1 cut(s)	889
Hpy8I	GTNNAC	2 cut(s)	6, 911
HpyAV	CCTTC	3 cut(s)	56, 229, 616
HpyCH4III	ACNGT	7 cut(s)	190, 222, 449, 587, 616, 712, 806
HpyCH4IV	ACGT	3 cut(s)	513, 817, 917
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 324, 344, 492, 552, 672, 789, 960
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	3 cut(s)	513, 817, 917
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	262, 377, 392, 472, 723, 1008
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	282, 367, 391, 538, 891
LmnI	GCTCC	1 cut(s)	760
LweI	GCATC	5 cut(s)	266, 558, 664, 838, 1010
MaeII	ACGT	3 cut(s)	513, 817, 917
MaeIII	GTNAC	4 cut(s)	184, 587, 605, 813
MalI	GATC	5 cut(s)	284, 369, 393, 540, 893
MbiI	CCGCTC	1 cut(s)	763
MboI	GATC	5 cut(s)	282, 367, 391, 538, 891
MboII	GAAGA	1 cut(s)	71
MfeI	CAATTG	2 cut(s)	634, 661
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	2 cut(s)	292, 729
MluCI	AATT	5 cut(s)	75, 248, 634, 661, 928
Mly113I	GGCGCC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	847
Mph1103I	ATGCAT	2 cut(s)	264, 657
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	4 cut(s)	207, 636, 820, 949
MspI	CCGG	2 cut(s)	9, 561
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	2 cut(s)	634, 661
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	8 cut(s)	24, 324, 344, 492, 552, 672, 789, 960
NarI	GGCGCC	1 cut(s)	27
NdeII	GATC	5 cut(s)	282, 367, 391, 538, 891
NlaIII	CATG	6 cut(s)	262, 377, 392, 472, 723, 1008
NlaIV	GGNNCC	3 cut(s)	28, 240, 893
NmuCI	GTSAC	3 cut(s)	184, 587, 813
NsiI	ATGCAT	2 cut(s)	264, 657
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	518
OliI	CACNNNNGTG	2 cut(s)	636, 820
PaeI	GCATGC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	548, 765
PleI	GAGTC	1 cut(s)	847
PluTI	GGCGCC	1 cut(s)	30
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	847
Ppu21I	YACGTR	1 cut(s)	818
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	916
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	241
PspCI	CACGTG	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	3 cut(s)	28, 240, 893
PspPI	GGNCC	3 cut(s)	239, 835, 995
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	2 cut(s)	320, 557
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	4 cut(s)	207, 636, 820, 949
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	547, 764
Sau3AI	GATC	5 cut(s)	282, 367, 391, 538, 891
Sau96I	GGNCC	3 cut(s)	239, 835, 995
SchI	GAGTC	1 cut(s)	847
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	292, 729
SfaNI	GCATC	5 cut(s)	266, 558, 664, 838, 1010
SfcI	CTRYAG	3 cut(s)	316, 448, 553
SfoI	GGCGCC	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	2 cut(s)	239, 835
SmiMI	CAYNNNNRTG	4 cut(s)	207, 636, 820, 949
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	5 cut(s)	75, 248, 634, 661, 928
SsiI	CCGC	4 cut(s)	165, 546, 569, 763
SspDI	GGCGCC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	7 cut(s)	190, 222, 449, 587, 616, 712, 806
TaiI	ACGT	3 cut(s)	516, 820, 920
TaqI	TCGA	4 cut(s)	5, 73, 312, 518
TasI	AATT	5 cut(s)	75, 248, 634, 661, 928
TauI	GCSGC	2 cut(s)	549, 766
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	3 cut(s)	452, 590, 621
TseFI	GTSAC	3 cut(s)	184, 587, 813
Tsp45I	GTSAC	3 cut(s)	184, 587, 813
TspDTI	ATGAA	3 cut(s)	33, 231, 402
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	3 cut(s)	452, 590, 621
VpaK11BI	GGWCC	2 cut(s)	239, 835
XapI	RAATTY	3 cut(s)	75, 248, 928
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	3 cut(s)	20, 188, 346
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	578
Zsp2I	ATGCAT	2 cut(s)	264, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.