Rh5DG397700

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005998
Physical Location & Seq
Forward (+)
62675202 .. 62678124
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG397700.1

Sequence Viewer

Length: 720 bp
ATGGAAACGATGCCCTGTTGTCATCGTTCAGAAAGAAAGGAGTTTGGTCATGAAGATCATTCGTCTCTAACAGAGCTCGGAGCTGGGAATTTTGGGTGCTCGCATTATAAAAGAAGATGCAAAATCAGAGCTCCTTGTTGTAACGAGGTTTATGATTGCCGGCATTGCCATGATGAAGCAAAGGACTCCCTAGATACTGATCCCCTTGATCGACATGTCATTTCTCGTCACGAGGTTAAAAAGGTCATCTGCTGTCTGTGTGGCATAGAACAAGATGTTCAACAACATTGCGTTAGCTGTGGAGTTTGCATGGGAAAGTACTTTTGCGCGATATGCAACTTCTATGATGATGATGTTTCAAAAGATATATACCACTGTGATAAATGTGGAATATGCAGAGTCGGAGGGGGAGAAAATTTCTTCCATTGTGAGAAATGCGGATGCTGCTACCCTAAGTCAGTGAAAGATCATCGCTGTATAGAAAGGGCAATGCACCATAACTGTCCTGTTTGTTTTGAGGTTGCCTCAACTCCAATGCCTCATGCGTACAGAACCAAAATGGTGGGGATCCTCTGCAATGATTGTGGAGCTAAAGGCGAAGTCAGTTTTCACATTGTCGCACACAAATGTCTCAGCTGCAATTCTTACAATACTAAACAGACACAAGGAGGTCATGGTGCTTCATGCTTATCAGATCATGTGGCTGAGATAGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

239

Amino Acids

26.84

Weight (kDa)

6.8

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 33 - 107 2.1e-17 CHY zinc finger
zinc_ribbon_6 PF14599 173 - 219 2.4e-19 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 438
AclWI GGATC 3 cut(s) 194, 562, 575
AcsI RAATTY 2 cut(s) 88, 415
AfaI GTAC 2 cut(s) 320, 548
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 281, 360
AluBI AGCT 6 cut(s) 76, 83, 131, 297, 590, 636
AluI AGCT 6 cut(s) 76, 83, 131, 297, 590, 636
Alw21I GWGCWC 3 cut(s) 78, 101, 133
Alw26I GTCTC 2 cut(s) 69, 635
AlwI GGATC 3 cut(s) 194, 562, 575
ApeKI GCWGC 2 cut(s) 444, 636
ApoI RAATTY 2 cut(s) 88, 415
AspLEI GCGC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 567
BanII GRGCYC 2 cut(s) 78, 133
BauI CACGAG 1 cut(s) 230
Bbv12I GWGCWC 3 cut(s) 78, 101, 133
BbvI GCAGC 2 cut(s) 431, 623
BcoDI GTCTC 2 cut(s) 69, 635
BfaI CTAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 445, 637
BlsI GCNGC 2 cut(s) 446, 638
BmcAI AGTACT 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 569
BmsI GCATC 2 cut(s) 107, 431
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BsaBI GATNNNNATC 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 159
Bse3DI GCAATG 4 cut(s) 163, 286, 495, 583
Bse8I GATNNNNATC 1 cut(s) 198
BseGI GGATG 1 cut(s) 446
BseJI GATNNNNATC 1 cut(s) 198
BseMI GCAATG 4 cut(s) 163, 286, 495, 583
BseMII CTCAG 2 cut(s) 646, 696
BseXI GCAGC 2 cut(s) 431, 623
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 329
BsiHKAI GWGCWC 3 cut(s) 78, 101, 133
BsiSI CCGG 1 cut(s) 160
BsmAI GTCTC 2 cut(s) 69, 635
BsmBI CGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 3 cut(s) 78, 101, 133
Bsp143I GATC 6 cut(s) 55, 199, 208, 466, 567, 694
BspACI CCGC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 645, 697
BspFNI CGCG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 569
BspPI GGATC 3 cut(s) 194, 562, 575
BsrDI GCAATG 4 cut(s) 163, 286, 495, 583
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssMI GATC 6 cut(s) 55, 199, 208, 466, 567, 694
BssSI CACGAG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 377, 503
BstC8I GCNNGC 2 cut(s) 101, 161
BstDEI CTNAG 3 cut(s) 453, 632, 705
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 6 cut(s) 58, 202, 211, 469, 570, 697
BstMAI GTCTC 2 cut(s) 69, 635
BstMBI GATC 6 cut(s) 55, 199, 208, 466, 567, 694
BstMWI GCNNNNNNNGC 3 cut(s) 165, 333, 444
BstNSI RCATGY 1 cut(s) 218
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 431, 623
BstX2I RGATCY 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 1 cut(s) 567
BtgZI GCGATG 1 cut(s) 455
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 373, 465
Cac8I GCNNGC 2 cut(s) 101, 161
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 159
Csp6I GTAC 2 cut(s) 319, 547
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 8 cut(s) 50, 170, 215, 310, 542, 674, 684, 698
CviJI RGCY 7 cut(s) 76, 83, 131, 297, 590, 636, 704
CviKI_1 RGCY 7 cut(s) 76, 83, 131, 297, 590, 636, 704
CviQI GTAC 2 cut(s) 319, 547
DdeI CTNAG 3 cut(s) 453, 632, 705
DpnI GATC 6 cut(s) 57, 201, 210, 468, 569, 696
DpnII GATC 6 cut(s) 55, 199, 208, 466, 567, 694
Ecl136II GAGCTC 2 cut(s) 76, 131
Eco24I GRGCYC 2 cut(s) 78, 133
Eco53kI GAGCTC 2 cut(s) 76, 131
EcoICRI GAGCTC 2 cut(s) 76, 131
EcoT38I GRGCYC 2 cut(s) 78, 133
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 8 cut(s) 53, 173, 218, 313, 545, 677, 687, 701
FatI CATG 8 cut(s) 49, 169, 214, 309, 541, 673, 683, 697
Fnu4HI GCNGC 2 cut(s) 445, 637
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 2 cut(s) 78, 133
Fsp4HI GCNGC 2 cut(s) 445, 637
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 328
GluI GCNGC 2 cut(s) 445, 637
GsaI CCCAGC 1 cut(s) 87
HapII CCGG 1 cut(s) 160
HhaI GCGC 1 cut(s) 329
Hin1II CATG 8 cut(s) 53, 173, 218, 313, 545, 677, 687, 701
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 2 cut(s) 185, 399
HpaII CCGG 1 cut(s) 160
Hpy188I TCNGA 5 cut(s) 31, 80, 128, 404, 694
Hpy188III TCNNGA 2 cut(s) 50, 230
HpyCH4III ACNGT 2 cut(s) 377, 503
HpyCH4V TGCA 7 cut(s) 120, 309, 336, 396, 493, 576, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 333, 444
HpyF3I CTNAG 3 cut(s) 453, 632, 705
Hsp92II CATG 8 cut(s) 53, 173, 218, 313, 545, 677, 687, 701
HspAI GCGC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Kzo9I GATC 6 cut(s) 55, 199, 208, 466, 567, 694
LmnI GCTCC 3 cut(s) 80, 136, 587
LpnPI CCDG 4 cut(s) 28, 69, 173, 519
Lsp1109I GCAGC 2 cut(s) 431, 623
LweI GCATC 2 cut(s) 107, 431
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 140, 227
MalI GATC 6 cut(s) 57, 201, 210, 468, 569, 696
MboI GATC 6 cut(s) 55, 199, 208, 466, 567, 694
MboII GAAGA 3 cut(s) 65, 126, 412
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 3 cut(s) 78, 101, 133
MluCI AATT 3 cut(s) 88, 415, 640
MlyI GAGTC 2 cut(s) 179, 408
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 8 cut(s) 139, 226, 398, 511, 535, 549, 581, 662
MroNI GCCGGC 1 cut(s) 159
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 168, 625
MspA1I CMGCKG 1 cut(s) 636
MspI CCGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 165, 333, 444
NaeI GCCGGC 1 cut(s) 161
NdeII GATC 6 cut(s) 55, 199, 208, 466, 567, 694
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 8 cut(s) 53, 173, 218, 313, 545, 677, 687, 701
NlaIV GGNNCC 1 cut(s) 569
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 1 cut(s) 218
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 446, 638
PleI GAGTC 2 cut(s) 179, 407
PpsI GAGTC 2 cut(s) 179, 407
PscI ACATGT 1 cut(s) 214
PsiI TTATAA 1 cut(s) 108
Psp124BI GAGCTC 2 cut(s) 78, 133
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 569
PsuI RGATCY 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 636
RsaI GTAC 2 cut(s) 320, 548
RsaNI GTAC 2 cut(s) 319, 547
RseI CAYNNNNRTG 2 cut(s) 168, 625
SacI GAGCTC 2 cut(s) 78, 133
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 445, 637
Sau3AI GATC 6 cut(s) 55, 199, 208, 466, 567, 694
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 2 cut(s) 179, 408
SduI GDGCHC 3 cut(s) 78, 101, 133
SfaNI GCATC 2 cut(s) 107, 431
SmiMI CAYNNNNRTG 2 cut(s) 168, 625
Sse9I AATT 3 cut(s) 88, 415, 640
SsiI CCGC 1 cut(s) 438
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 2 cut(s) 78, 133
TaaI ACNGT 2 cut(s) 377, 503
TaqI TCGA 1 cut(s) 211
TasI AATT 3 cut(s) 88, 415, 640
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 380, 465
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 444, 636
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 66, 189, 672
TspRI CASTG 2 cut(s) 380, 465
XapI RAATTY 2 cut(s) 88, 415
XceI RCATGY 1 cut(s) 218
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.