Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Forward (+)

8880863 .. 8882542

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTGGGTTAATGGGTATCATCAAATAAGAATACATCTAAACTCTGAACTCAGTTTCAAGGCAAATCCAAGTCGCTTCTTCCGTTCATTCCAGGTTTTGTATCATCCTTCAGTTGATTCATATGAAGATGTATTGCCTCATGAATGGTACGAAACGAAACTCCCAGTTCTGAAGAAACTAAACCGTGCGTTGAGAGATGTTGATTTAGTCGACGGAAAGCTAGAGGACATCAATGGTGTCATCGTTTATGATGATGGTATCACAAAGAAAATGCAAGCATTTAAATCTCTAGCTAGAATCTTTATTGGGTCTCCTTCAATTCAGCAGAAGCTTAGAGAAGAGGGACGGTTCAAGTTCCCATTTTTTGGGAGTGAAAGTGAAAGAGAGCCATTGGTGGTGAATTCATTGACTAAAGTTTGCAACTTTCTCAACGTCTCGGCGCAACAGAGGAAGCTAGTGAGGAGCACTGTGTGTTCACAGGTAACGCAGTATCGTATATGGAGAGGTACTCTTGAAGATATATTGAATGGTCTTAAAGAAGAAGTTGATTGGTTAGTTGAACATAGAGAGATGAGTCAAGGTAGAGTATTGGCTCAGCAAGTGATATTGTCTTGCCTCAGATTCTTATCTGAATCATCAGTTTCATTTGAAGTCGAGAAATCAACTTCTTGGATGCGGCCTGTGCCAGCTAGATATGCGAAAGCTAATGCTTCTGCGAAATGGGAAGATGTACTTGATATGGTGAATGATCTGAGAAGGTATCTTGAACATGATGAAGAAATCACAGTACTTTACCATCTGGATAAGCTTGTATCGATGAAAGAAGGGCTTTTGCAGATCAAAGATGTGTTTTTAGACAACACTATTGGATTCAGAGAGGTTAGACATCAAGAGCACCTTGTGTACAGAAAGCTCTCAAAGCTGTTGGGCAGTCCATCACCGTGTTTGTTTGCTCTCGTCATGTATTTCCTCTATGGCCGTGTGCGTGACATCGAAGTTGATCTCTGTGGAGGGTTTTACAAGGAGAAGAGCGAGTTCTTGTGCTTAAGTATGGGGAGGATCTTGACTTCAACGGATGAGAAAATGTTGGAGAGAGGGATGAAGCAGTTAGATAGGGCATTGGGTCTCTTTGAGTTTGTGTGGGAAACAGCAGGAATGAAAGAGACTCTTAACCTACAAGGCCATTTGTGGTGCCTTGGAGCTGAAGAAAGATCCATCACATATCGTGGGAAGACGTTCTTCGTGCATGACCTTAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

48.92

Weight (kDa)

7.17

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1191
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	676
AclWI	GGATC	2 cut(s)	1067, 1206
AcoI	YGGCCR	1 cut(s)	976
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	3 cut(s)	93, 191, 1224
AdeI	CACNNNGTG	2 cut(s)	471, 901
AfaI	GTAC	5 cut(s)	149, 508, 732, 789, 905
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflII	CTTAAG	1 cut(s)	1045
AgsI	TTSAA	9 cut(s)	58, 318, 352, 515, 526, 560, 650, 767, 1071
AjnI	CCWGG	1 cut(s)	90
Alw21I	GWGCWC	2 cut(s)	467, 897
Alw26I	GTCTC	4 cut(s)	315, 439, 1130, 1157
AlwI	GGATC	2 cut(s)	1067, 1206
AoxI	GGCC	3 cut(s)	677, 976, 1180
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	1235
AspLEI	GCGC	1 cut(s)	442
AsuHPI	GGTGA	3 cut(s)	409, 754, 930
BanI	GGYRCC	1 cut(s)	1191
BbsI	GAAGAC	1 cut(s)	1238
Bbv12I	GWGCWC	2 cut(s)	467, 897
BccI	CCATC	4 cut(s)	248, 804, 943, 1223
BceAI	ACGGC	1 cut(s)	963
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	4 cut(s)	315, 439, 1130, 1157
BfaI	CTAG	5 cut(s)	221, 290, 294, 455, 690
BfrI	CTTAAG	1 cut(s)	1045
BisI	GCNGC	1 cut(s)	677
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	678
BmcAI	AGTACT	1 cut(s)	789
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	1193
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	158
BoxI	GACNNNNGTC	1 cut(s)	1254
BpiI	GAAGAC	1 cut(s)	1238
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
Bpu1102I	GCTNAGC	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	625
BsaI	GGTCTC	2 cut(s)	315, 1130
BsaJI	CCNNGG	1 cut(s)	1195
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	815
BseDI	CCNNGG	1 cut(s)	1195
BseGI	GGATG	4 cut(s)	103, 678, 1081, 1104
BseJI	GATNNNNATC	1 cut(s)	625
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	4 cut(s)	64, 608, 631, 743
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	679, 978, 1182
BshNI	GGYRCC	1 cut(s)	1191
BshVI	ATCGAT	1 cut(s)	815
BsiHKAI	GWGCWC	2 cut(s)	467, 897
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	4 cut(s)	315, 439, 1130, 1157
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	679, 978, 1182
Bso31I	GGTCTC	2 cut(s)	315, 1130
Bsp1286I	GDGCHC	2 cut(s)	467, 897
Bsp1407I	TGTACA	1 cut(s)	903
Bsp143I	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	1 cut(s)	676
BspANI	GGCC	3 cut(s)	679, 978, 1182
BspCNI	CTCAG	4 cut(s)	63, 607, 630, 744
BspDI	ATCGAT	1 cut(s)	815
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	1193
BspPI	GGATC	2 cut(s)	1067, 1206
BspQI	GCTCTTC	1 cut(s)	1022
BspT107I	GGYRCC	1 cut(s)	1191
BspTI	CTTAAG	1 cut(s)	1045
BspTNI	GGTCTC	2 cut(s)	315, 1130
BsrGI	TGTACA	1 cut(s)	903
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	1195
BssMI	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
BssT1I	CCWWGG	1 cut(s)	1195
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	5 cut(s)	185, 348, 469, 787, 942
Bst6I	CTCTTC	2 cut(s)	333, 1022
BstAFI	CTTAAG	1 cut(s)	1045
BstAUI	TGTACA	1 cut(s)	903
BstC8I	GCNNGC	2 cut(s)	276, 687
BstDEI	CTNAG	6 cut(s)	50, 332, 594, 617, 752, 1253
BstF5I	GGATG	4 cut(s)	103, 678, 1081, 1104
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	5 cut(s)	751, 840, 1003, 1062, 1214
BstMAI	GTCTC	4 cut(s)	315, 439, 1130, 1157
BstMBI	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
BstMWI	GCNNNNNNNGC	3 cut(s)	682, 695, 919
BstNI	CCWGG	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	1254
BstSCI	CCNGG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	1238
BstX2I	RGATCY	2 cut(s)	1059, 1211
BstYI	RGATCY	2 cut(s)	1059, 1211
Bsu15I	ATCGAT	1 cut(s)	815
BsuRI	GGCC	3 cut(s)	679, 978, 1182
BsuTUI	ATCGAT	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	103, 678, 1081, 1104
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	276, 687
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	442
ClaI	ATCGAT	1 cut(s)	815
Csp6I	GTAC	5 cut(s)	148, 507, 731, 788, 904
CviAII	CATG	4 cut(s)	140, 770, 961, 1247
CviQI	GTAC	5 cut(s)	148, 507, 731, 788, 904
DdeI	CTNAG	6 cut(s)	50, 332, 594, 617, 752, 1253
DpnI	GATC	5 cut(s)	750, 839, 1002, 1061, 1213
DpnII	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
DraI	TTTAAA	1 cut(s)	283
DraIII	CACNNNGTG	2 cut(s)	471, 901
EaeI	YGGCCR	1 cut(s)	976
Eam1104I	CTCTTC	2 cut(s)	333, 1022
EarI	CTCTTC	2 cut(s)	333, 1022
Eco130I	CCWWGG	1 cut(s)	1195
Eco31I	GGTCTC	2 cut(s)	315, 1130
Eco57I	CTGAAG	3 cut(s)	93, 191, 1224
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	1195
ErhI	CCWWGG	1 cut(s)	1195
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	4 cut(s)	143, 773, 964, 1250
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	4 cut(s)	139, 769, 960, 1246
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	677
FokI	GGATG	4 cut(s)	90, 685, 1088, 1111
Fsp4HI	GCNGC	1 cut(s)	677
FspBI	CTAG	5 cut(s)	221, 290, 294, 455, 690
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	679, 978, 1182
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	4 cut(s)	143, 773, 964, 1250
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	329, 806
HinfI	GANTC	7 cut(s)	116, 297, 574, 621, 632, 870, 1165
HphI	GGTGA	3 cut(s)	409, 754, 930
Hpy166II	GTNNAC	3 cut(s)	211, 476, 904
Hpy188I	TCNGA	7 cut(s)	46, 171, 620, 631, 753, 875, 1262
Hpy188III	TCNNGA	7 cut(s)	140, 512, 655, 764, 800, 890, 1063
Hpy8I	GTNNAC	3 cut(s)	211, 476, 904
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	117, 324, 750, 818
HpyCH4III	ACNGT	5 cut(s)	185, 348, 469, 787, 942
HpyCH4IV	ACGT	2 cut(s)	432, 1235
HpyCH4V	TGCA	4 cut(s)	274, 420, 835, 1246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	682, 695, 919
HpyF3I	CTNAG	6 cut(s)	50, 332, 594, 617, 752, 1253
HpySE526I	ACGT	2 cut(s)	432, 1235
Hsp92II	CATG	4 cut(s)	143, 773, 964, 1250
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
LguI	GCTCTTC	1 cut(s)	1022
LmnI	GCTCC	2 cut(s)	462, 1199
LpnPI	CCDG	8 cut(s)	77, 104, 177, 464, 693, 699, 785, 1137
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	5 cut(s)	221, 290, 294, 455, 690
MaeII	ACGT	2 cut(s)	432, 1235
MaeIII	GTNAC	2 cut(s)	481, 986
MalI	GATC	5 cut(s)	750, 839, 1002, 1061, 1213
MboI	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
MflI	RGATCY	2 cut(s)	1059, 1211
MhlI	GDGCHC	2 cut(s)	467, 897
MluCI	AATT	2 cut(s)	318, 400
MlyI	GAGTC	2 cut(s)	583, 1159
MmeI	TCCRAC	1 cut(s)	1068
MroXI	GAANNNNTTC	1 cut(s)	1235
MseI	TTAA	5 cut(s)	9, 282, 534, 1046, 1170
MslI	CAYNNNNRTG	1 cut(s)	940
MspCI	CTTAAG	1 cut(s)	1045
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	682, 695, 919
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
NlaIII	CATG	4 cut(s)	143, 773, 964, 1250
NlaIV	GGNNCC	1 cut(s)	1193
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	986
PagI	TCATGA	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	1022
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	1235
PfeI	GAWTC	5 cut(s)	116, 297, 621, 632, 870
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	678
PleI	GAGTC	2 cut(s)	582, 1159
PpsI	GAGTC	2 cut(s)	582, 1159
PshAI	GACNNNNGTC	1 cut(s)	1254
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	1193
PsuI	RGATCY	2 cut(s)	1059, 1211
RsaI	GTAC	5 cut(s)	149, 508, 732, 789, 905
RsaNI	GTAC	5 cut(s)	148, 507, 731, 788, 904
RseI	CAYNNNNRTG	1 cut(s)	940
SalI	GTCGAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	1022
SaqAI	TTAA	5 cut(s)	9, 282, 534, 1046, 1170
SatI	GCNGC	1 cut(s)	677
Sau3AI	GATC	5 cut(s)	748, 837, 1000, 1059, 1211
ScaI	AGTACT	1 cut(s)	789
SchI	GAGTC	2 cut(s)	583, 1159
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	467, 897
SfaNI	GCATC	1 cut(s)	663
SmiI	ATTTAAAT	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	940
SmlI	CTYRAG	1 cut(s)	1045
SmoI	CTYRAG	1 cut(s)	1045
Sse9I	AATT	2 cut(s)	318, 400
SsiI	CCGC	1 cut(s)	676
SspMI	CTAG	5 cut(s)	221, 290, 294, 455, 690
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	1195
SwaI	ATTTAAAT	1 cut(s)	283
TaaI	ACNGT	5 cut(s)	185, 348, 469, 787, 942
TaiI	ACGT	2 cut(s)	435, 1238
TaqI	TCGA	4 cut(s)	210, 654, 815, 993
TasI	AATT	2 cut(s)	318, 400
TatI	WGTACW	3 cut(s)	730, 787, 903
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	5 cut(s)	116, 297, 621, 632, 870
Tru1I	TTAA	5 cut(s)	9, 282, 534, 1046, 1170
Tru9I	TTAA	5 cut(s)	9, 282, 534, 1046, 1170
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	986
Tsp45I	GTSAC	1 cut(s)	986
TspGWI	ACGGA	3 cut(s)	71, 228, 1088
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	1045
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	1235
XspI	CTAG	5 cut(s)	221, 290, 294, 455, 690
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.