Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Forward (+)

8770816 .. 8771742

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1122300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCCAAGCGAAACGGAGCTTTGCATTTGAATGCGATGCCGTATCATTTCTCGGAGGAGTTTGGTGAAGAGCATTTGCCACCAGAGTGGTATCAGAAGGCATTCCCCAAGTTGACGAAATTAACCCAATTGTTGAAAAATGTCGATTTGATTGATGGAAGGCTAGTTAATATCAGTGATGGTTCGATTATCATTGACGACCGTGTTGAACACAGAATGCTTACTTTTAAGTCACCTGCCACGGTATTTATTGGAGCTCCATTGGTACAGAAAGCGCTGAAGAATAATGTGGCGGCATTTAGGGAGCCCGTCATTGTGAAATCACTCTCCACAGTAGGTGGCTTTCTCAACATCTCTGCCCAACAAAGGCTGTCAGTGCGTGTCAAAATATCCCCACAGGTCGCACAACACCGCATATGGAGTGGCACACTTGAGGAGGTACTCAATGGATTGAAATCCGAGCTGGATTGTTTGGATTATCGGTGCCCAAGTAAACGGACGAAGATGGGACAGCAGATAGTTTCTAGCTGTCTAAAGTTCTTGGCTGACACATCCACATCTGTTGCATATGAGTACGACTCCTCTTCATGGACACGCCTTGCGCCTGCAAAAGTTATTGACTCTTCTGGTTTGCAAAAATGGGAAGAGGTTCTTGATATGTTCAACGACCTCATTGATTGGTTGAAAAATGAAAGGGAGTTACTCGTTTCCGTAGCAAAGCTTGAGGTCATGAAAGAGGGGCTGTCTCAAGTCCAGGATGTGCTGACTGATAGAAGTGGATTAGAGATATTGAAGTGGATGTACGCGATGGGGTTTATAGCTGTGCTAGTGAGAATGGTTTCTGCTTGTGCATGGGAAGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.45

Weight (kDa)

6.97

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	483
AccII	CGCG	1 cut(s)	806
AciI	CCGC	2 cut(s)	293, 412
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	4 cut(s)	267, 441, 575, 803
AfeI	AGCGCT	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	366, 588
AgsI	TTSAA	7 cut(s)	31, 136, 209, 454, 664, 685, 793
AjnI	CCWGG	1 cut(s)	753
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	6 cut(s)	20, 257, 463, 528, 721, 821
AluI	AGCT	6 cut(s)	20, 257, 463, 528, 721, 821
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	750
Aor51HI	AGCGCT	1 cut(s)	276
AoxI	GGCC	1 cut(s)	3
Asp700I	GAANNNNTTC	3 cut(s)	101, 648, 838
AspLEI	GCGC	2 cut(s)	277, 604
AsuHPI	GGTGA	2 cut(s)	77, 225
BaeGI	GKGCMC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	259, 309
BarI	GAAGNNNNNNTAC	2 cut(s)	785, 817
Bbv12I	GWGCWC	1 cut(s)	259
BccI	CCATC	4 cut(s)	149, 173, 499, 802
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	3 cut(s)	164, 525, 827
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	755
BmiI	GGNNCC	2 cut(s)	306, 485
BmrFI	CCNGG	1 cut(s)	755
BmsI	GCATC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpuEI	CTTGAG	3 cut(s)	452, 732, 743
BsaBI	GATNNNNATC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 588
Bse8I	GATNNNNATC	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	3 cut(s)	551, 763, 804
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	366, 588
BseRI	GAGGAG	3 cut(s)	71, 449, 571
BseSI	GKGCMC	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	806
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	366, 588
BsmAI	GTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	522
BsmI	GAATGC	3 cut(s)	37, 101, 222
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	259, 309, 488
BspACI	CCGC	2 cut(s)	293, 412
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	806
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	2 cut(s)	306, 485
BspMI	ACCTGC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	3 cut(s)	203, 244, 334
Bst6I	CTCTTC	4 cut(s)	63, 589, 628, 639
BstC8I	GCNNGC	1 cut(s)	606
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	551, 763, 804
BstFNI	CGCG	1 cut(s)	806
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 604
BstMAI	GTCTC	1 cut(s)	750
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	806
BstXI	CCANNNNNNTGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	2 cut(s)	50, 821
BtsCI	GGATG	3 cut(s)	551, 763, 804
BtsIMutI	CAGTG	2 cut(s)	181, 381
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	606
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	2 cut(s)	277, 604
Csp6I	GTAC	4 cut(s)	266, 440, 574, 802
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	3 cut(s)	588, 730, 852
CviQI	GTAC	4 cut(s)	266, 440, 574, 802
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	63, 589, 628, 639
EarI	CTCTTC	4 cut(s)	63, 589, 628, 639
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	259, 309
Eco47III	AGCGCT	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	753
EcoT38I	GRGCYC	2 cut(s)	259, 309
FaeI	CATG	3 cut(s)	591, 733, 855
FaiI	YATR	9 cut(s)	416, 418, 568, 570, 589, 659, 731, 818, 853
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	587, 729, 851
FauNDI	CATATG	2 cut(s)	416, 568
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	3 cut(s)	538, 770, 811
FriOI	GRGCYC	2 cut(s)	259, 309
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	3 cut(s)	164, 525, 827
GlaI	GCGC	2 cut(s)	276, 603
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	277, 604
Hin1II	CATG	3 cut(s)	591, 733, 855
Hin6I	GCGC	2 cut(s)	275, 602
HinP1I	GCGC	2 cut(s)	275, 602
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	2 cut(s)	578, 620
HphI	GGTGA	2 cut(s)	77, 225
Hpy166II	GTNNAC	2 cut(s)	114, 494
Hpy188I	TCNGA	3 cut(s)	55, 96, 460
Hpy188III	TCNNGA	2 cut(s)	653, 730
Hpy8I	GTNNAC	2 cut(s)	114, 494
HpyAV	CCTTC	3 cut(s)	91, 153, 851
HpyCH4III	ACNGT	3 cut(s)	203, 244, 334
HpyCH4V	TGCA	5 cut(s)	25, 566, 608, 634, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	591, 733, 855
HspAI	GCGC	2 cut(s)	275, 602
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	4 cut(s)	17, 254, 262, 304
LpnPI	CCDG	8 cut(s)	96, 249, 383, 449, 612, 618, 740, 767
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	3 cut(s)	164, 525, 827
MaeIII	GTNAC	2 cut(s)	231, 699
MboII	GAAGA	6 cut(s)	80, 292, 514, 576, 615, 656
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	259, 309, 488
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	119, 128
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	572, 614
MnlI	CCTC	8 cut(s)	49, 427, 430, 592, 640, 680, 718, 730
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	101, 648, 838
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	122, 168, 228
MslI	CAYNNNNRTG	2 cut(s)	30, 85
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	755
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	3 cut(s)	37, 101, 222
MvaI	CCWGG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	806
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeI	CATATG	2 cut(s)	416, 568
NlaIII	CATG	3 cut(s)	591, 733, 855
NlaIV	GGNNCC	2 cut(s)	306, 485
NmuCI	GTSAC	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	729
PaqCI	CACCTGC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	63
PctI	GAATGC	3 cut(s)	37, 101, 222
PdmI	GAANNNNTTC	3 cut(s)	101, 648, 838
PfoI	TCCNGGA	1 cut(s)	753
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	572, 614
PpsI	GAGTC	2 cut(s)	572, 614
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	306, 485
RsaI	GTAC	4 cut(s)	267, 441, 575, 803
RsaNI	GTAC	4 cut(s)	266, 440, 574, 802
RseI	CAYNNNNRTG	2 cut(s)	30, 85
SacI	GAGCTC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	122, 168, 228
SatI	GCNGC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	572, 614
ScrFI	CCNGG	1 cut(s)	755
SduI	GDGCHC	3 cut(s)	259, 309, 488
SfaNI	GCATC	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	30, 85
SmlI	CTYRAG	3 cut(s)	431, 722, 747
SmoI	CTYRAG	3 cut(s)	431, 722, 747
Sse9I	AATT	2 cut(s)	119, 128
SsiI	CCGC	2 cut(s)	293, 412
SspMI	CTAG	3 cut(s)	164, 525, 827
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	753
TaaI	ACNGT	3 cut(s)	203, 244, 334
TaqI	TCGA	2 cut(s)	144, 185
TasI	AATT	2 cut(s)	119, 128
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	122, 168, 228
Tru9I	TTAA	3 cut(s)	122, 168, 228
TscAI	CASTG	2 cut(s)	181, 381
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	3 cut(s)	576, 705, 746
TspGWI	ACGGA	3 cut(s)	30, 511, 700
TspRI	CASTG	2 cut(s)	181, 381
XmnI	GAANNNNTTC	3 cut(s)	101, 648, 838
XspI	CTAG	3 cut(s)	164, 525, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.