RchiOBHm_Chr6g0298391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008025
Physical Location & Seq
Reverse (-)
59849626 .. 59851852
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26786

Sequence Viewer

Length: 1254 bp
ATGGAGAAGGTGATCTATGGTGCGAGGCATGTAATGGGTAAGCGAAATGGAGCCCTGCATTTGAATGTGATGCTATATCATGGCTCAGAGGAGTCTCGTGGGGAGCCTTTGTCCCTGGAATGGTATAGAAAGGCATTTCCGAAGTTGACGAAACTGACCCGGTTGCTTAAAGATGTGGATTTGGTTGATGGGAGGCTTGTTAATATCAATGATGGTTCGATTATCGTGAATGGCCGAGCTGAACACAAAATGGTTGCTTTCAAGTCACTTGCCAGGGTCTTCGTTGGGTCTCCATTGGTTCAGCAGACGCTGTGGAGTAATGTGGTGGCGTGGGCTGGCGGCAGAGGATGTGACCCTTTTGTCTGTTTCAGTAAACCAAGGGAAAGAGAGCCCTTGGTTGTGAAGTCAATGTCTGTAGTGGGTAGCATTCTGAATATTACTGCACAGCAGAGGCAGACGGTGCGTGTGAAGATATGTCCGCAGGTCACGCAGCACCGTATATGGACCGGCACGCTTGAGGAGATACTAAATGGATTGAAATGTGAGTTGGAGGTTGTAGATTATCTGTGCCCGAGCAAAGGGACGAGGATTGGTCAGCAGATAGTTTCTAGCTGTCTGAAGTTCTTGGCTGACACATCCATTTCATATGATGATGACTCGGCTTCGTGGATGCGCCTTTCAACTGCAAAGATCACTGACTCTTCTGGTTTGCGAAAATGGGAAGACCTGCTTGAGATGTTCAATGACCTTATTGATTGTTTGAAAAACGACAGGGAGTTACTTCTTTATGTGACGAAGCTTGAGGTCATGAAAGAGGGGCTGTCTCAAATCAAGGATGTGTTGGTTGATAGAAGTATTGGATTCAAGGAAGTACGACATCAAGAAAGCCTAGTGCAGAAGAAGCTGTCCAAGACATTGGGTCATTCATCCCAGTGTTTGTTCACACTCTTGTTATATTACCTCTATGGGCATGTTAGAGATATTGAAGTAGACTTATCTGGTGGTCTTTATAGCATTAGTGACAAGAGTCTCTGTCTGTGCATGGGAAGGATTGTGACTTCAGATGAGGAGACGATGATTTGGAGTGGGGTGAAGCAGTTGGACAAGGCTCTCGGTCTTTTCAAGTTTGTATGGGAAACAGCAGGAATGGAAGGAGTTTTGCAATTGCAAGGCCATATATGGTGTGTAGGAGCCGAGAGCAGAACACTTACATATAGAGGAAGCACATTCTTTGTACATGGAATTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

47.03

Weight (kDa)

8.53

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
Acc36I ACCTGC 2 cut(s) 472, 735
AccI GTMKAC 1 cut(s) 990
AciI CCGC 2 cut(s) 339, 479
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 1242
AcuI CTGAAG 2 cut(s) 638, 1044
AfaI GTAC 2 cut(s) 873, 1236
AfiI CCNNNNNNNGG 2 cut(s) 120, 578
AgsI TTSAA 9 cut(s) 64, 262, 538, 681, 742, 763, 865, 986, 1123
AhdI GACNNNNNGTC 1 cut(s) 918
AjnI CCWGG 2 cut(s) 114, 272
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 4 cut(s) 239, 612, 799, 904
AluI AGCT 4 cut(s) 239, 612, 799, 904
Alw26I GTCTC 5 cut(s) 99, 294, 828, 1034, 1064
AlwNI CAGNNNCTG 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 2 cut(s) 232, 1171
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 1 cut(s) 1242
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 22, 1102
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 572
BanII GRGCYC 2 cut(s) 55, 393
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 271, 729
BbvI GCAGC 1 cut(s) 502
BccI CCATC 2 cut(s) 182, 206
BciT130I CCWGG 2 cut(s) 116, 274
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 5 cut(s) 99, 294, 828, 1034, 1064
BfaI CTAG 2 cut(s) 609, 890
BfmI CTRYAG 1 cut(s) 414
BfuAI ACCTGC 2 cut(s) 472, 735
BisI GCNGC 2 cut(s) 340, 491
BlsI GCNGC 2 cut(s) 341, 492
Bme1390I CCNGG 3 cut(s) 116, 160, 274
Bme18I GGWCC 1 cut(s) 504
BmeRI GACNNNNNGTC 1 cut(s) 918
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 3 cut(s) 52, 105, 1192
BmrFI CCNGG 3 cut(s) 116, 160, 274
BmrI ACTGGG 1 cut(s) 925
BmsI GCATC 2 cut(s) 60, 660
BmuI ACTGGG 1 cut(s) 925
BoxI GACNNNNGTC 1 cut(s) 1026
BpiI GAAGAC 2 cut(s) 271, 729
BpuEI CTTGAG 3 cut(s) 536, 752, 821
BpuMI CCSGG 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 114, 273, 377, 393
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 578
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 931
BseBI CCWGG 2 cut(s) 116, 274
BseDI CCNNGG 4 cut(s) 114, 273, 377, 393
BseGI GGATG 5 cut(s) 353, 635, 675, 841, 926
BseLI CCNNNNNNNGG 2 cut(s) 120, 578
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 931
BseRI GAGGAG 3 cut(s) 104, 533, 1082
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 1 cut(s) 502
BsgI GTGCAG 2 cut(s) 426, 914
BshFI GGCC 2 cut(s) 234, 1173
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 2 cut(s) 160, 507
BslFI GGGAC 2 cut(s) 97, 595
BslI CCNNNNNNNGG 2 cut(s) 120, 578
BsmAI GTCTC 5 cut(s) 99, 294, 828, 1034, 1064
BsmBI CGTCTC 1 cut(s) 1064
BsmFI GGGAC 2 cut(s) 97, 595
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 2 cut(s) 234, 1173
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 55, 393, 572
Bsp1407I TGTACA 1 cut(s) 1234
Bsp143I GATC 2 cut(s) 12, 690
BspACI CCGC 2 cut(s) 339, 479
BspANI GGCC 2 cut(s) 234, 1173
BspCNI CTCAG 1 cut(s) 98
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 3 cut(s) 52, 105, 1192
BspMI ACCTGC 2 cut(s) 472, 735
BspTNI GGTCTC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 1234
BsrI ACTGG 1 cut(s) 931
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 4 cut(s) 114, 273, 377, 393
BssMI GATC 2 cut(s) 12, 690
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 377, 393
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 116, 274
Bst4CI ACNGT 2 cut(s) 460, 497
Bst6I CTCTTC 1 cut(s) 706
BstAPI GCANNNNNTGC 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 1234
BstC8I GCNNGC 2 cut(s) 337, 512
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 5 cut(s) 353, 635, 675, 841, 926
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 2 cut(s) 15, 693
BstMAI GTCTC 5 cut(s) 99, 294, 828, 1034, 1064
BstMBI GATC 2 cut(s) 12, 690
BstMWI GCNNNNNNNGC 3 cut(s) 460, 487, 901
BstNI CCWGG 2 cut(s) 116, 274
BstNSI RCATGY 2 cut(s) 32, 974
BstPAI GACNNNNGTC 1 cut(s) 1026
BstSCI CCNGG 3 cut(s) 114, 158, 272
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 2 cut(s) 271, 729
BstXI CCANNNNNNTGG 1 cut(s) 916
BsuRI GGCC 2 cut(s) 234, 1173
BtsCI GGATG 5 cut(s) 353, 635, 675, 841, 926
BtsIMutI CAGTG 2 cut(s) 693, 938
BveI ACCTGC 2 cut(s) 472, 735
Cac8I GCNNGC 2 cut(s) 337, 512
CaiI CAGNNNCTG 1 cut(s) 310
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 675
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 504
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 872, 1235
CviAII CATG 7 cut(s) 29, 80, 808, 971, 1042, 1238, 1247
CviQI GTAC 2 cut(s) 872, 1235
DdeI CTNAG 1 cut(s) 85
DpnI GATC 2 cut(s) 14, 692
DpnII GATC 2 cut(s) 12, 690
DrdI GACNNNNNNGTC 1 cut(s) 359
DriI GACNNNNNGTC 1 cut(s) 918
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 706
Eam1105I GACNNNNNGTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 706
Eco130I CCWWGG 2 cut(s) 377, 393
Eco24I GRGCYC 2 cut(s) 55, 393
Eco31I GGTCTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 504
Eco57I CTGAAG 2 cut(s) 638, 1044
Eco88I CYCGRG 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 1242
EcoRII CCWGG 2 cut(s) 114, 272
EcoT14I CCWWGG 2 cut(s) 377, 393
EcoT38I GRGCYC 2 cut(s) 55, 393
ErhI CCWWGG 2 cut(s) 377, 393
Esp3I CGTCTC 1 cut(s) 1064
FaeI CATG 7 cut(s) 32, 83, 811, 974, 1045, 1241, 1250
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FaqI GGGAC 2 cut(s) 97, 595
FatI CATG 7 cut(s) 28, 79, 807, 970, 1041, 1237, 1246
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 2 cut(s) 340, 491
FokI GGATG 5 cut(s) 360, 622, 682, 848, 913
FriOI GRGCYC 2 cut(s) 55, 393
Fsp4HI GCNGC 2 cut(s) 340, 491
FspBI CTAG 2 cut(s) 609, 890
GlaI GCGC 1 cut(s) 674
GluI GCNGC 2 cut(s) 340, 491
HaeIII GGCC 2 cut(s) 234, 1173
HapII CCGG 2 cut(s) 160, 507
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 675
Hin1II CATG 7 cut(s) 32, 83, 811, 974, 1045, 1241, 1250
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 5 cut(s) 92, 656, 698, 861, 1027
HpaII CCGG 2 cut(s) 160, 507
HphI GGTGA 2 cut(s) 22, 1102
Hpy166II GTNNAC 4 cut(s) 147, 374, 942, 991
Hpy188I TCNGA 5 cut(s) 88, 141, 432, 618, 1063
Hpy188III TCNNGA 3 cut(s) 226, 808, 881
Hpy8I GTNNAC 4 cut(s) 147, 374, 942, 991
HpyAV CCTTC 2 cut(s) 1041, 1145
HpyCH4III ACNGT 2 cut(s) 460, 497
HpyCH4V TGCA 7 cut(s) 58, 443, 686, 895, 1041, 1162, 1168
HpyF10VI GCNNNNNNNGC 3 cut(s) 460, 487, 901
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 7 cut(s) 32, 83, 811, 974, 1045, 1241, 1250
HspAI GCGC 1 cut(s) 673
Kzo9I GATC 2 cut(s) 12, 690
LmnI GCTCC 3 cut(s) 50, 103, 1190
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 2 cut(s) 60, 660
MaeI CTAG 2 cut(s) 609, 890
MaeIII GTNAC 7 cut(s) 264, 350, 484, 777, 790, 1019, 1054
MalI GATC 2 cut(s) 14, 692
MboI GATC 2 cut(s) 12, 690
MboII GAAGA 5 cut(s) 271, 481, 693, 734, 910
MfeI CAATTG 1 cut(s) 1163
MhlI GDGCHC 3 cut(s) 55, 393, 572
MluCI AATT 2 cut(s) 1163, 1242
MlyI GAGTC 4 cut(s) 101, 650, 692, 1036
MmeI TCCRAC 2 cut(s) 528, 1080
MseI TTAA 2 cut(s) 168, 201
MslI CAYNNNNRTG 2 cut(s) 63, 931
MspI CCGG 2 cut(s) 160, 507
MspR9I CCNGG 3 cut(s) 116, 160, 274
MunI CAATTG 1 cut(s) 1163
Mva1269I GAATGC 1 cut(s) 426
MvaI CCWGG 2 cut(s) 116, 274
MwoI GCNNNNNNNGC 3 cut(s) 460, 487, 901
NciI CCSGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 646
NdeII GATC 2 cut(s) 12, 690
NlaIII CATG 7 cut(s) 32, 83, 811, 974, 1045, 1241, 1250
NlaIV GGNNCC 3 cut(s) 52, 105, 1192
NmeAIII GCCGAG 3 cut(s) 260, 638, 1219
NmuCI GTSAC 6 cut(s) 264, 350, 484, 790, 1019, 1054
NspI RCATGY 2 cut(s) 32, 974
PagI TCATGA 1 cut(s) 807
PctI GAATGC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 861
PkrI GCNGC 2 cut(s) 341, 492
PleI GAGTC 4 cut(s) 100, 650, 692, 1035
PpsI GAGTC 4 cut(s) 100, 650, 692, 1035
PshAI GACNNNNGTC 1 cut(s) 1026
Psp6I CCWGG 2 cut(s) 114, 272
PspGI CCWGG 2 cut(s) 114, 272
PspN4I GGNNCC 3 cut(s) 52, 105, 1192
PspPI GGNCC 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 310
RsaI GTAC 2 cut(s) 873, 1236
RsaNI GTAC 2 cut(s) 872, 1235
RseI CAYNNNNRTG 2 cut(s) 63, 931
SaqAI TTAA 2 cut(s) 168, 201
SatI GCNGC 2 cut(s) 340, 491
Sau3AI GATC 2 cut(s) 12, 690
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 4 cut(s) 101, 650, 692, 1036
ScrFI CCNGG 3 cut(s) 116, 160, 274
SduI GDGCHC 3 cut(s) 55, 393, 572
SfaNI GCATC 2 cut(s) 60, 660
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 63, 931
SmlI CTYRAG 3 cut(s) 515, 731, 800
SmoI CTYRAG 3 cut(s) 515, 731, 800
Sse9I AATT 2 cut(s) 1163, 1242
SsiI CCGC 2 cut(s) 339, 479
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 609, 890
StyD4I CCNGG 3 cut(s) 114, 158, 272
StyI CCWWGG 2 cut(s) 377, 393
TaaI ACNGT 2 cut(s) 460, 497
TaqI TCGA 1 cut(s) 218
TaqII GACCGA 1 cut(s) 1103
TasI AATT 2 cut(s) 1163, 1242
TatI WGTACW 1 cut(s) 1234
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 1 cut(s) 861
Tru1I TTAA 2 cut(s) 168, 201
Tru9I TTAA 2 cut(s) 168, 201
TscAI CASTG 2 cut(s) 700, 938
TseFI GTSAC 6 cut(s) 264, 350, 484, 790, 1019, 1054
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 6 cut(s) 264, 350, 484, 790, 1019, 1054
TspDTI ATGAA 4 cut(s) 633, 824, 915, 1235
TspRI CASTG 2 cut(s) 700, 938
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 1242
XceI RCATGY 2 cut(s) 32, 974
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 2 cut(s) 609, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.