Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000854

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Forward (+)

6782 .. 7576

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom854g00010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTAAGAAAAACGGAGCTTTGCATTTGAATGCGTTGCTGTATCATTTATCGGAGGAGTTTGGTGAAGAGCCGTTGCCACCAGAGTGGTATCAGAAGGCATTCCCCAAGTTGACGAAATTAACCCAATTGTTGAAAAATGTCGATTTGATTGATGGAAGGCTTGTTAATATCAGTGATGGTTCGATAATCATTGACGACCGTGTTGAACAAAGAATGCTTACTTTCAAGTCACCTGCCACGGTATTTATTGGAGCTCCATTGCTACAGAAAGGGCTGAAGAATAATGTGGCGGCATTTCGGGAGGTGGCACAACACCGTATATGGACTGGCGCGCTTACGGAGGTACTCAATGGATTGAATTCCGAGCTGGACTGTTTGGATTATCGGTGCCCAAGTAAACGGACGAAGATGGGACAGCAGATAGTTTGTAGCTGTCCAAAGTTCTTGGCTGACACATCCACATCTGTTGCATATGAGCACGACTCCTCTTCATGGACACGCCTTGCGCCTGCAAAAGTTATTGACTCTTCCGGTTTGCAGAAATGGGAAGAGGTTCTTGATATATTCAACGACCTCATTGTTTGGTTGAAAAACGAAAGGGAATTGTCTTCTATCCGCTGTAAACGCAGTCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.09

Weight (kDa)

7.63

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	390
AccII	CGCG	1 cut(s)	335
AciI	CCGC	2 cut(s)	293, 619
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	7 cut(s)	31, 136, 209, 229, 361, 571, 592
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	4 cut(s)	20, 257, 370, 435
AluI	AGCT	4 cut(s)	20, 257, 370, 435
Alw21I	GWGCWC	2 cut(s)	259, 483
Alw26I	GTCTC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	101, 555
AspLEI	GCGC	3 cut(s)	335, 337, 511
AsuHPI	GGTGA	2 cut(s)	77, 225
BaeGI	GKGCMC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	259, 483
BccI	CCATC	3 cut(s)	149, 173, 406
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	638
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	603
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	533
BsaXI	ACNNNNNCTCC	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	334
BsePI	GCGCGC	1 cut(s)	333
BseRI	GAGGAG	2 cut(s)	71, 478
BseSI	GKGCMC	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	259, 483
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	3 cut(s)	37, 101, 222
Bsp1286I	GDGCHC	3 cut(s)	259, 395, 483
BspACI	CCGC	2 cut(s)	293, 619
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	392
BspMI	ACCTGC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	240
BssHII	GCGCGC	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	203, 244, 320, 377
Bst6I	CTCTTC	4 cut(s)	63, 496, 535, 546
BstC8I	GCNNGC	2 cut(s)	335, 513
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	335, 337, 511
BstMAI	GTCTC	1 cut(s)	638
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	603
BstXI	CCANNNNNNTGG	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	335, 513
CfoI	GCGC	3 cut(s)	335, 337, 511
Csp6I	GTAC	1 cut(s)	347
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	9 cut(s)	5, 20, 73, 163, 257, 277, 370, 435, 452
CviKI_1	RGCY	9 cut(s)	5, 20, 73, 163, 257, 277, 370, 435, 452
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	6
Eam1104I	CTCTTC	4 cut(s)	63, 496, 535, 546
EarI	CTCTTC	4 cut(s)	63, 496, 535, 546
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	1 cut(s)	498
FaiI	YATR	6 cut(s)	323, 325, 475, 477, 496, 566
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	1 cut(s)	494
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	294
GlaI	GCGC	3 cut(s)	334, 336, 510
GluI	GCNGC	1 cut(s)	294
HapII	CCGG	1 cut(s)	534
HhaI	GCGC	3 cut(s)	335, 337, 511
Hin1II	CATG	1 cut(s)	498
Hin6I	GCGC	3 cut(s)	333, 335, 509
HinP1I	GCGC	3 cut(s)	333, 335, 509
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	485, 527
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	2 cut(s)	77, 225
Hpy166II	GTNNAC	3 cut(s)	114, 401, 626
Hpy188I	TCNGA	3 cut(s)	55, 96, 367
Hpy188III	TCNNGA	2 cut(s)	302, 560
Hpy8I	GTNNAC	3 cut(s)	114, 401, 626
HpyAV	CCTTC	2 cut(s)	91, 153
HpyCH4III	ACNGT	4 cut(s)	203, 244, 320, 377
HpyCH4V	TGCA	4 cut(s)	25, 473, 515, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	498
HspAI	GCGC	3 cut(s)	333, 335, 509
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	3 cut(s)	17, 254, 262
LpnPI	CCDG	6 cut(s)	96, 249, 315, 356, 525, 547
MaeIII	GTNAC	1 cut(s)	231
MboII	GAAGA	7 cut(s)	80, 292, 421, 483, 522, 563, 603
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	259, 395, 483
MluCI	AATT	4 cut(s)	119, 128, 361, 605
MlyI	GAGTC	2 cut(s)	479, 521
MnlI	CCTC	6 cut(s)	49, 298, 337, 499, 547, 587
MroXI	GAANNNNTTC	2 cut(s)	101, 555
MseI	TTAA	3 cut(s)	122, 168, 640
MslI	CAYNNNNRTG	2 cut(s)	30, 85
MspA1I	CMGCKG	1 cut(s)	621
MspI	CCGG	1 cut(s)	534
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	3 cut(s)	37, 101, 222
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeI	CATATG	1 cut(s)	475
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	244
PauI	GCGCGC	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	63
PctI	GAATGC	3 cut(s)	37, 101, 222
PdmI	GAANNNNTTC	2 cut(s)	101, 555
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	479, 521
PpsI	GAGTC	2 cut(s)	479, 521
Psp124BI	GAGCTC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	392
PteI	GCGCGC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	2 cut(s)	30, 85
SacI	GAGCTC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	122, 168, 640
SatI	GCNGC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	479, 521
SduI	GDGCHC	3 cut(s)	259, 395, 483
SetI	ASST	9 cut(s)	22, 238, 259, 309, 348, 372, 437, 558, 579
SfcI	CTRYAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	30, 85
Sse9I	AATT	4 cut(s)	119, 128, 361, 605
SsiI	CCGC	2 cut(s)	293, 619
SstI	GAGCTC	1 cut(s)	259
TaaI	ACNGT	4 cut(s)	203, 244, 320, 377
TaqI	TCGA	2 cut(s)	144, 185
TasI	AATT	4 cut(s)	119, 128, 361, 605
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	122, 168, 640
Tru9I	TTAA	3 cut(s)	122, 168, 640
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	3 cut(s)	30, 356, 418
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	361
XmnI	GAANNNNTTC	2 cut(s)	101, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.