Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Forward (+)

39457187 .. 39459062

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G474900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCCTGTAGACATGTAGACAGGTTAATACATGGTGCAAGGCATCTAATGGCTAAGCGAAAGGGAGCTGTCCATTTGAATGGGATGCTACATCATTGCTCAGAGGAGTCTCATGGAGAGCCTATGCCCCGAGAATGGTATCAAAAGGAATTCCCCAAGTTAACAAAACTATCCCAATTGTTAAAAAATGTCGATTTGGTTGATGGAAGGCTTGTTAACATCAGTGATGGTTCAATTATCATGGATGACCGTATTGAACACAGAATGCTTACTTTCAAGTCACTTGCCAGGGAATTTATTGGTTCTCCATTAGTTCAGCAAACGTTAAAGAATGATGTCGTGGCGTTGTCAGGTGGTAGAATCTGTAATCAATTTGTGTGTTTCAGTAAACCAAATGAAAGAGAGCCCATGGTTGTAAAAACACTCTCCGTAGTAAGTGGCTTTCTGAACATCACTGCTCAACAAAGACAGTCAGTACGTGTTACATTATCTCCACAGATTACACAGCACCGCATATGGACTGGGACGCTTGAGGAGGTACTGAATGGATTGAAATCTGAGTTGGAATATTTAGATCATCGGTGCCCAAGCAAAGGGACGAAGATGGGACAGCAGATAGTTGCTAGCTGTCTGAAGTTCTTGGCTGACACATCCACATCCATTTCATATGAACATGATTGCTCTTCATGGACGCGCCTATCGCCTGCAAAAGTTACAGACTCTTCTGGTTTGCAAAAATGGGAAGATGTTCTCGAGATGTTCAACGACCTCATTGATTGTTTGAAAAATGAAAGGGAGTTACTTCTTTACGTAGCGAAGCTTAAGGTCTTGAAAGAGGGGCTGTCTCAGATCAAGGATGTGTTGACTGATAGAAATATAGGACACAAGGAAGTTCGGCATCAAGAAAGCCTAGTGCAGAAGAAGCTGACAAAGACATTGGGTCATTCGTCCAAGTGCCTGTTCACACTTATGTTATATTACCTCTTTGGGCATGTTAGAGATATTGAAGTGGACGTACGTGGCGGCATTTATAGCAGCGGTAGTGAGAACGATTTCTGCTTGTGCATGGGAAGGATTGTGACTTCAGATGAGGAGGAGATGGTTTGGAGCGGGGTGAGGCAGTTGGACAGGGCTCTTGGACTTTTCAAGTTTGTATGGGAAACAGCAGGGATGAAAGGAGCTTTACAACTGCAAGGGCATATATGGTGCGTAGGGGCTGAAGGCAGAACACTTACATATAGAGGAAACACATTTTTCGTCCATGGGATTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

48.22

Weight (kDa)

8.51

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	582
AccBSI	CCGCTC	1 cut(s)	1110
AccI	GTMKAC	2 cut(s)	10, 18
AccII	CGCG	1 cut(s)	694
AciI	CCGC	4 cut(s)	511, 1023, 1038, 1110
AclI	AACGTT	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	149, 293
AcuI	CTGAAG	3 cut(s)	653, 1068, 1239
AfaI	GTAC	3 cut(s)	477, 540, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	135, 593
AflII	CTTAAG	1 cut(s)	821
AflIII	ACRYGT	2 cut(s)	13, 478
AhdI	GACNNNNNGTC	1 cut(s)	939
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	4 cut(s)	545, 577, 944, 976
AluBI	AGCT	5 cut(s)	68, 627, 820, 925, 1181
AluI	AGCT	5 cut(s)	68, 627, 820, 925, 1181
Alw26I	GTCTC	2 cut(s)	114, 849
Ama87I	CYCGRG	2 cut(s)	129, 752
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	1035
ApoI	RAATTY	2 cut(s)	149, 293
Asp700I	GAANNNNTTC	2 cut(s)	747, 1052
AspLEI	GCGC	1 cut(s)	696
AsuHPI	GGTGA	1 cut(s)	1126
AsuNHI	GCTAGC	1 cut(s)	623
AvaI	CYCGRG	2 cut(s)	129, 752
BaeGI	GKGCMC	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	2 cut(s)	408, 1135
BarI	GAAGNNNNNNTAC	2 cut(s)	999, 1031
BbvI	GCAGC	1 cut(s)	1047
BccI	CCATC	4 cut(s)	197, 221, 598, 1093
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	114, 849
BfaI	CTAG	2 cut(s)	624, 911
BfmI	CTRYAG	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	821
BisI	GCNGC	2 cut(s)	1024, 1036
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	2 cut(s)	1025, 1037
Bme1390I	CCNGG	1 cut(s)	289
BmeRI	GACNNNNNGTC	1 cut(s)	939
BmeT110I	CYCGRG	2 cut(s)	129, 752
BmiI	GGNNCC	1 cut(s)	584
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	3 cut(s)	52, 75, 907
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	3 cut(s)	479, 811, 1019
BsaBI	GATNNNNATC	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	288, 408, 1261
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 593
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	288, 408, 1261
BseGI	GGATG	6 cut(s)	90, 250, 650, 656, 862, 1176
BseJI	GATNNNNATC	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	135, 593
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	114, 549, 860
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	4 cut(s)	119, 548, 1106, 1109
BseSI	GKGCMC	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	1047
BsgI	GTGCAG	1 cut(s)	935
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	582
BsiHKCI	CYCGRG	2 cut(s)	129, 752
BsiWI	CGTACG	1 cut(s)	1015
BslFI	GGGAC	3 cut(s)	538, 610, 621
BslI	CCNNNNNNNGG	2 cut(s)	135, 593
BsmAI	GTCTC	2 cut(s)	114, 849
BsmFI	GGGAC	3 cut(s)	538, 610, 621
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	129, 752
Bsp1286I	GDGCHC	3 cut(s)	408, 587, 1135
Bsp143I	GATC	2 cut(s)	574, 849
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	2 cut(s)	408, 1261
BspACI	CCGC	4 cut(s)	511, 1023, 1038, 1110
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	113, 550, 859
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	688
BspT107I	GGYRCC	1 cut(s)	582
BspTI	CTTAAG	1 cut(s)	821
BsrBI	CCGCTC	1 cut(s)	1110
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	288, 408, 1261
BssMI	GATC	2 cut(s)	574, 849
BssT1I	CCWWGG	2 cut(s)	408, 1261
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	251, 471
Bst6I	CTCTTC	2 cut(s)	688, 727
BstAFI	CTTAAG	1 cut(s)	821
BstBAI	YACGTR	3 cut(s)	479, 811, 1019
BstC8I	GCNNGC	2 cut(s)	625, 705
BstDEI	CTNAG	4 cut(s)	54, 100, 558, 846
BstDSI	CCRYGG	2 cut(s)	408, 1261
BstF5I	GGATG	6 cut(s)	90, 250, 650, 656, 862, 1176
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	2 cut(s)	577, 852
BstMAI	GTCTC	2 cut(s)	114, 849
BstMBI	GATC	2 cut(s)	574, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	700, 922, 1032
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	2 cut(s)	17, 995
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	7
BstSLI	GKGCMC	1 cut(s)	587
BstSNI	TACGTA	1 cut(s)	811
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	1047
BstXI	CCANNNNNNTGG	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	408, 1261
BtsCI	GGATG	6 cut(s)	90, 250, 650, 656, 862, 1176
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	229, 453
Cac8I	GCNNGC	2 cut(s)	625, 705
CfoI	GCGC	1 cut(s)	696
CseI	GACGC	2 cut(s)	535, 700
Csp6I	GTAC	3 cut(s)	476, 539, 1016
CviQI	GTAC	3 cut(s)	476, 539, 1016
DdeI	CTNAG	4 cut(s)	54, 100, 558, 846
DpnI	GATC	2 cut(s)	576, 851
DpnII	GATC	2 cut(s)	574, 849
DriI	GACNNNNNGTC	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	688, 727
Eam1105I	GACNNNNNGTC	1 cut(s)	939
EarI	CTCTTC	2 cut(s)	688, 727
Eco105I	TACGTA	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	408, 1261
Eco24I	GRGCYC	2 cut(s)	408, 1135
Eco57I	CTGAAG	3 cut(s)	653, 1068, 1239
Eco88I	CYCGRG	2 cut(s)	129, 752
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	408, 1261
EcoT38I	GRGCYC	2 cut(s)	408, 1135
ErhI	CCWWGG	2 cut(s)	408, 1261
FaqI	GGGAC	3 cut(s)	538, 610, 621
FauI	CCCGC	1 cut(s)	1103
FauNDI	CATATG	2 cut(s)	515, 667
FblI	GTMKAC	2 cut(s)	10, 18
Fnu4HI	GCNGC	2 cut(s)	1024, 1036
FokI	GGATG	6 cut(s)	97, 257, 637, 643, 869, 1183
FriOI	GRGCYC	2 cut(s)	408, 1135
Fsp4HI	GCNGC	2 cut(s)	1024, 1036
FspBI	CTAG	2 cut(s)	624, 911
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	2 cut(s)	1024, 1036
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	535, 700
HhaI	GCGC	1 cut(s)	696
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HincII	GTYRAC	3 cut(s)	162, 217, 864
HindII	GTYRAC	3 cut(s)	162, 217, 864
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	4 cut(s)	107, 360, 719, 1267
HpaI	GTTAAC	2 cut(s)	162, 217
HphI	GGTGA	1 cut(s)	1126
Hpy166II	GTNNAC	8 cut(s)	11, 19, 162, 217, 389, 864, 963, 1012
Hpy188I	TCNGA	6 cut(s)	103, 447, 559, 633, 849, 1087
Hpy188III	TCNNGA	4 cut(s)	752, 754, 829, 902
Hpy8I	GTNNAC	8 cut(s)	11, 19, 162, 217, 389, 864, 963, 1012
HpyAV	CCTTC	3 cut(s)	201, 1065, 1214
HpyCH4III	ACNGT	2 cut(s)	251, 471
HpyCH4IV	ACGT	5 cut(s)	323, 478, 810, 1014, 1018
HpyCH4V	TGCA	6 cut(s)	38, 707, 733, 916, 1065, 1192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	700, 922, 1032
HpyF3I	CTNAG	4 cut(s)	54, 100, 558, 846
HpySE526I	ACGT	5 cut(s)	323, 478, 810, 1014, 1018
HspAI	GCGC	1 cut(s)	694
KspAI	GTTAAC	2 cut(s)	162, 217
Kzo9I	GATC	2 cut(s)	574, 849
LguI	GCTCTTC	1 cut(s)	688
LmnI	GCTCC	3 cut(s)	65, 1107, 1178
Lsp1109I	GCAGC	1 cut(s)	1047
LweI	GCATC	3 cut(s)	52, 75, 907
MaeI	CTAG	2 cut(s)	624, 911
MaeII	ACGT	5 cut(s)	323, 478, 810, 1014, 1018
MaeIII	GTNAC	5 cut(s)	279, 481, 712, 798, 1078
MalI	GATC	2 cut(s)	576, 851
MbiI	CCGCTC	1 cut(s)	1110
MboI	GATC	2 cut(s)	574, 849
MboII	GAAGA	5 cut(s)	613, 675, 714, 755, 931
MfeI	CAATTG	1 cut(s)	176
MhlI	GDGCHC	3 cut(s)	408, 587, 1135
MluCI	AATT	5 cut(s)	149, 176, 234, 293, 371
MlyI	GAGTC	2 cut(s)	116, 713
MmeI	TCCRAC	2 cut(s)	543, 1104
MroXI	GAANNNNTTC	2 cut(s)	747, 1052
MseI	TTAA	6 cut(s)	26, 161, 182, 216, 326, 822
MslI	CAYNNNNRTG	2 cut(s)	78, 968
MspA1I	CMGCKG	1 cut(s)	1038
MspCI	CTTAAG	1 cut(s)	821
MspR9I	CCNGG	1 cut(s)	289
MunI	CAATTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	3 cut(s)	700, 922, 1032
NcoI	CCATGG	2 cut(s)	408, 1261
NdeI	CATATG	2 cut(s)	515, 667
NdeII	GATC	2 cut(s)	574, 849
NheI	GCTAGC	1 cut(s)	623
NlaIV	GGNNCC	1 cut(s)	584
NmuCI	GTSAC	2 cut(s)	279, 1078
NspI	RCATGY	2 cut(s)	17, 995
PaeR7I	CTCGAG	1 cut(s)	752
PciI	ACATGT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	688
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	2 cut(s)	747, 1052
PfeI	GAWTC	2 cut(s)	360, 1267
Pfl23II	CGTACG	1 cut(s)	1015
PkrI	GCNGC	2 cut(s)	1025, 1037
PleI	GAGTC	2 cut(s)	115, 713
PpsI	GAGTC	2 cut(s)	115, 713
Ppu21I	YACGTR	3 cut(s)	479, 811, 1019
PscI	ACATGT	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspLI	CGTACG	1 cut(s)	1015
PspN4I	GGNNCC	1 cut(s)	584
RsaI	GTAC	3 cut(s)	477, 540, 1017
RsaNI	GTAC	3 cut(s)	476, 539, 1016
RseI	CAYNNNNRTG	2 cut(s)	78, 968
SapI	GCTCTTC	1 cut(s)	688
SaqAI	TTAA	6 cut(s)	26, 161, 182, 216, 326, 822
SatI	GCNGC	2 cut(s)	1024, 1036
Sau3AI	GATC	2 cut(s)	574, 849
SchI	GAGTC	2 cut(s)	116, 713
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	3 cut(s)	408, 587, 1135
SfaNI	GCATC	3 cut(s)	52, 75, 907
SfcI	CTRYAG	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	752
SlaI	CTCGAG	1 cut(s)	752
SmiMI	CAYNNNNRTG	2 cut(s)	78, 968
SmlI	CTYRAG	3 cut(s)	530, 752, 821
SmoI	CTYRAG	3 cut(s)	530, 752, 821
SnaBI	TACGTA	1 cut(s)	811
Sse9I	AATT	5 cut(s)	149, 176, 234, 293, 371
SsiI	CCGC	4 cut(s)	511, 1023, 1038, 1110
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	2 cut(s)	624, 911
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	408, 1261
TaaI	ACNGT	2 cut(s)	251, 471
TaiI	ACGT	5 cut(s)	326, 481, 813, 1017, 1021
TaqI	TCGA	2 cut(s)	192, 753
TasI	AATT	5 cut(s)	149, 176, 234, 293, 371
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	2 cut(s)	360, 1267
Tru1I	TTAA	6 cut(s)	26, 161, 182, 216, 326, 822
Tru9I	TTAA	6 cut(s)	26, 161, 182, 216, 326, 822
TscAI	CASTG	2 cut(s)	229, 460
TseFI	GTSAC	2 cut(s)	279, 1078
TseI	GCWGC	1 cut(s)	1035
Tsp45I	GTSAC	2 cut(s)	279, 1078
TspDTI	ATGAA	7 cut(s)	411, 654, 675, 684, 804, 1187, 1259
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	2 cut(s)	229, 460
Vha464I	CTTAAG	1 cut(s)	821
XapI	RAATTY	2 cut(s)	149, 293
XceI	RCATGY	2 cut(s)	17, 995
XhoI	CTCGAG	1 cut(s)	752
XmiI	GTMKAC	2 cut(s)	10, 18
XmnI	GAANNNNTTC	2 cut(s)	747, 1052
XspI	CTAG	2 cut(s)	624, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.