pycom15g10980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008025
Physical Location & Seq
Forward (+)
7373465 .. 7374328
864 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10980.1

Sequence Viewer

Length: 399 bp
ATGCCTACCTTCAAATCACTTGCCAGGAACTTTACTGGAGCTTCACTGGTACAGAAAGCGCTGAAGAATAATGTTGCGGCTTTATCAGGAGCAAAGCTTGAGGTCATGAAAGAGGGGTTGTCTCAAGTCAAGGATGTGCTGACTCCTAGAAGCATAGGACACAAGGAAGTCCGGCATCAAGAAAGCCTAGTGCAGAAGAAGTTGACGAAGACATTGGGTCATTCATCCCAGTGCTTGTTCACAGTTCTGTTTTTTTACCTCTATGGGCATGTTAGAGATATTGAAGTGGATGTATGCGGTGGGGTTTATAGATGCGGTAGTGAGAATGATTTATGCTTGTGCATGGGAAGGATTGTGCACTTGGGCTTTTCAAGTTTGTATGGGAAACAGCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

9.32

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 297, 315
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 60
AgsI TTSAA 3 cut(s) 13, 284, 372
AhdI GACNNNNNGTC 1 cut(s) 216
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 41, 97
AluI AGCT 2 cut(s) 41, 97
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 356
Aor51HI AGCGCT 1 cut(s) 60
ApaLI GTGCAC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 2 cut(s) 147, 188
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 25
BmeRI GACNNNNNGTC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 25
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 184, 302
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 108, 119
Bse1I ACTGG 3 cut(s) 40, 51, 229
BseBI CCWGG 1 cut(s) 25
BseGI GGATG 3 cut(s) 139, 224, 295
BseNI ACTGG 3 cut(s) 40, 51, 229
BseSI GKGCMC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 360
BspACI CCGC 3 cut(s) 77, 297, 315
BspHI TCATGA 1 cut(s) 105
BsrI ACTGG 3 cut(s) 40, 51, 229
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 244
BstF5I GGATG 3 cut(s) 139, 224, 295
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 215
BtsCI GGATG 3 cut(s) 139, 224, 295
BtsIMutI CAGTG 2 cut(s) 44, 236
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 50
CviAII CATG 3 cut(s) 106, 269, 343
CviJI RGCY 5 cut(s) 41, 80, 97, 186, 366
CviKI_1 RGCY 5 cut(s) 41, 80, 97, 186, 366
CviQI GTAC 1 cut(s) 50
DriI GACNNNNNGTC 1 cut(s) 216
Eam1105I GACNNNNNGTC 1 cut(s) 216
Eco47III AGCGCT 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 109, 272, 346
FaiI YATR 9 cut(s) 107, 155, 264, 270, 295, 309, 334, 344, 381
FatI CATG 3 cut(s) 105, 268, 342
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 3 cut(s) 146, 211, 302
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 147, 188
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 1 cut(s) 172
HhaI GCGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 109, 272, 346
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 3 cut(s) 204, 240, 358
Hpy188III TCNNGA 3 cut(s) 87, 106, 179
Hpy8I GTNNAC 3 cut(s) 204, 240, 358
HpyAV CCTTC 2 cut(s) 19, 342
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 193, 342, 358
Hsp92II CATG 3 cut(s) 109, 272, 346
HspAI GCGC 1 cut(s) 59
LmnI GCTCC 2 cut(s) 38, 89
LpnPI CCDG 8 cut(s) 10, 21, 32, 37, 72, 185, 242, 377
LweI GCATC 2 cut(s) 184, 302
MaeI CTAG 2 cut(s) 147, 188
MboII GAAGA 3 cut(s) 76, 208, 220
MhlI GDGCHC 1 cut(s) 360
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 3 cut(s) 94, 106, 269
MslI CAYNNNNRTG 1 cut(s) 229
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NlaIII CATG 3 cut(s) 109, 272, 346
NspI RCATGY 1 cut(s) 272
PagI TCATGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 229
SatI GCNGC 1 cut(s) 78
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 360
SetI ASST 5 cut(s) 11, 43, 99, 105, 261
SfaNI GCATC 2 cut(s) 184, 302
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 2 cut(s) 98, 123
SmoI CTYRAG 2 cut(s) 98, 123
SsiI CCGC 3 cut(s) 77, 297, 315
SspMI CTAG 2 cut(s) 147, 188
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 244
TauI GCSGC 1 cut(s) 80
TscAI CASTG 2 cut(s) 51, 236
TspDTI ATGAA 2 cut(s) 122, 213
TspRI CASTG 2 cut(s) 51, 236
VneI GTGCAC 1 cut(s) 356
XceI RCATGY 1 cut(s) 272
XspI CTAG 2 cut(s) 147, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.