Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Reverse (-)

8600305 .. 8601366

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1119600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAGGTTTGTTAATTTCAGTGATGGTTCGATTATCATCGACGACCGTCGACCATGTTGAACGCAGAATGCTTACTTTCAAGTCACTTGCCAGGGTCTTTACTGGAGCTCCATTGGTACAGAAAGTGCTGAAGAATCATGTGGCGGCATTGTCAGGAGCAAAGGGACAAAGAGGACAGCAGATAGTTTCTAGCGGTCTAAAGTTCTTGGCTGACACATCCACGTCCGTTTCATGTGAGCACGACTTCTCTTCATGGACAAGCCTTTCGCCTGCAAAAGTTATTGACTCTTCTGGTTTGCAAAAATGGGAAGATGTTCTTGAAATGTTCAACGACCTCATTGATTGGTTGAAAAATGAAAGGGAGTTGCTCGTTTACGTAGCAAAGCTTGAGGTCACGAAAGAGGGGCTTTCTCAAGTCAAGGATGTGCTGACTGATACAAGTACAGGACACAAGGAAGTTCGGCATCAAGAAAGCCTAGTGCAGAAGAAGTTGACGAAGACACTGGGTTATTCATCCAAGTGCTTGTTCGCACTTATGTTATATTACCTCTATGGGCATGTTAGAGATATTGAAGTGGATGTACGCGGTGGGGTTTATAGCTGTGGTAGTGAGAATGATTTCTGCTTGTGCATGGGAAGGATTGTGACTTCGGATGTGGTATGGAGTGAGGTGAGGCAGTTGGACAGGGCTCTTGGGATTTTCAAGTTTGTGTGGGAAACAGCAGGGGTGAAAGGAGCTTTGCAACTGCAAGGCCATATATGGTGTGTAGGGGCTGAGGCCAGAGTGGTTACGTATAGAGGAAACTCATTTTTTGGTACACGGATTTCGTGTTTAAGCAATGATTGTCTTACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

31.88

Weight (kDa)

8.07

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	588
AciI	CCGC	3 cut(s)	146, 195, 588
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	4 cut(s)	120, 445, 585, 820
AgsI	TTSAA	7 cut(s)	62, 82, 323, 331, 352, 575, 706
AjiI	CACGTC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	4 cut(s)	110, 388, 603, 740
AluI	AGCT	4 cut(s)	110, 388, 603, 740
Alw21I	GWGCWC	2 cut(s)	112, 243
AoxI	GGCC	2 cut(s)	754, 780
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
Asp700I	GAANNNNTTC	2 cut(s)	315, 620
AsuHPI	GGTGA	2 cut(s)	685, 742
BanII	GRGCYC	2 cut(s)	112, 694
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	2 cut(s)	112, 243
BbvCI	CCTCAGC	1 cut(s)	777
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	94
BfaI	CTAG	2 cut(s)	192, 479
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	515
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	2 cut(s)	399, 410
BsaAI	YACGTR	2 cut(s)	379, 795
BsaBI	GATNNNNATC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse1I	ACTGG	2 cut(s)	109, 510
Bse3DI	GCAATG	1 cut(s)	847
Bse8I	GATNNNNATC	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	5 cut(s)	218, 430, 515, 586, 661
BseJI	GATNNNNATC	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	2 cut(s)	109, 510
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	756, 782
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	112, 243
BslFI	GGGAC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	756, 782
Bsp1286I	GDGCHC	3 cut(s)	112, 243, 694
BspACI	CCGC	3 cut(s)	146, 195, 588
BspANI	GGCC	2 cut(s)	756, 782
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	847
BsrI	ACTGG	2 cut(s)	109, 510
BssECI	CCNNGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	256, 295
BstBAI	YACGTR	2 cut(s)	379, 795
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	777
BstF5I	GGATG	5 cut(s)	218, 430, 515, 586, 661
BstFNI	CGCG	1 cut(s)	588
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	563
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	92
BstSNI	TACGTA	2 cut(s)	379, 795
BstUI	CGCG	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	756, 782
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	5 cut(s)	218, 430, 515, 586, 661
BtsIMutI	CAGTG	2 cut(s)	27, 503
Cac8I	GCNNGC	1 cut(s)	273
Csp6I	GTAC	4 cut(s)	119, 444, 584, 819
CviAII	CATG	6 cut(s)	56, 140, 234, 255, 560, 634
CviQI	GTAC	4 cut(s)	119, 444, 584, 819
DdeI	CTNAG	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	256, 295
EarI	CTCTTC	2 cut(s)	256, 295
Ecl136II	GAGCTC	1 cut(s)	110
Eco105I	TACGTA	2 cut(s)	379, 795
Eco24I	GRGCYC	2 cut(s)	112, 694
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	2 cut(s)	112, 694
FaeI	CATG	6 cut(s)	59, 143, 237, 258, 563, 637
FalI	AAGNNNNNCTT	4 cut(s)	303, 335, 393, 425
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	6 cut(s)	55, 139, 233, 254, 559, 633
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	5 cut(s)	205, 437, 502, 593, 668
FriOI	GRGCYC	2 cut(s)	112, 694
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	192, 479
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	756, 782
Hin1II	CATG	6 cut(s)	59, 143, 237, 258, 563, 637
HincII	GTYRAC	2 cut(s)	52, 495
HindII	GTYRAC	2 cut(s)	52, 495
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	2 cut(s)	136, 287
HphI	GGTGA	2 cut(s)	685, 742
Hpy166II	GTNNAC	4 cut(s)	52, 376, 495, 821
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	4 cut(s)	156, 320, 397, 470
Hpy8I	GTNNAC	4 cut(s)	52, 376, 495, 821
Hpy99I	CGWCG	2 cut(s)	46, 53
HpyAV	CCTTC	1 cut(s)	633
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	3 cut(s)	224, 378, 794
HpyCH4V	TGCA	6 cut(s)	275, 301, 484, 633, 745, 751
HpyF3I	CTNAG	1 cut(s)	777
HpySE526I	ACGT	3 cut(s)	224, 378, 794
Hsp92II	CATG	6 cut(s)	59, 143, 237, 258, 563, 637
LmnI	GCTCC	4 cut(s)	107, 115, 158, 737
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	2 cut(s)	192, 479
MaeII	ACGT	3 cut(s)	224, 378, 794
MaeIII	GTNAC	4 cut(s)	84, 394, 646, 790
MboII	GAAGA	6 cut(s)	145, 243, 282, 323, 499, 511
MhlI	GDGCHC	3 cut(s)	112, 243, 694
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	9 cut(s)	167, 347, 385, 397, 560, 664, 669, 772, 794
MroXI	GAANNNNTTC	2 cut(s)	315, 620
MseI	TTAA	2 cut(s)	14, 836
MslI	CAYNNNNRTG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	588
NlaIII	CATG	6 cut(s)	59, 143, 237, 258, 563, 637
NmuCI	GTSAC	3 cut(s)	84, 394, 646
NspI	RCATGY	1 cut(s)	563
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	315, 620
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	2 cut(s)	379, 795
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
RsaI	GTAC	4 cut(s)	120, 445, 585, 820
RsaNI	GTAC	4 cut(s)	119, 444, 584, 819
RseI	CAYNNNNRTG	1 cut(s)	520
SacI	GAGCTC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	14, 836
SatI	GCNGC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	3 cut(s)	112, 243, 694
SfaNI	GCATC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	2 cut(s)	389, 414
SmoI	CTYRAG	2 cut(s)	389, 414
SnaBI	TACGTA	2 cut(s)	379, 795
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	3 cut(s)	146, 195, 588
SspMI	CTAG	2 cut(s)	192, 479
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	3 cut(s)	227, 381, 797
TaqI	TCGA	3 cut(s)	31, 41, 51
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	14, 836
Tru9I	TTAA	2 cut(s)	14, 836
TscAI	CASTG	2 cut(s)	27, 510
TseFI	GTSAC	3 cut(s)	84, 394, 646
Tsp45I	GTSAC	3 cut(s)	84, 394, 646
TspDTI	ATGAA	4 cut(s)	222, 243, 372, 504
TspGWI	ACGGA	2 cut(s)	217, 838
TspRI	CASTG	2 cut(s)	27, 510
XceI	RCATGY	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	2 cut(s)	315, 620
XspI	CTAG	2 cut(s)	192, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.