Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008025

Physical Location & Seq

Genomic Coordinates Reverse (-)

22861101 .. 22863254

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCGTATAGGGTGATCAATGGTGCGAAGCATGTAATGGGTAAGCGAAATGGAGCCGTGAAGTTGAATGTGATGCTGTACCATGCCTCAGAGGAGTCTCATGGGGAGACATTGCCTGCAGAGTGGTATAGGAAGGCATTTCCCAAGCTGACGAAACTGACCCGGTTGCTTAAAGATGTGGATTTTGCTGATGGTAGGCTTGTTAACATCACTGATGGTTCGGTTATAGTGAATGCACGCGCTGAACATAAGATGGTTGCTTTCAAGTCACTTGCCAGAGTTTTTGTTGGGTCTCCATTGGTTCAGCAGACGCTGTGGAACAATGTGGTGGCGTGGTCCAGCGGTAGAGGATGTAACCCTTTTGTGTGTTTTAGTAAAACAGGTGAGAGGCAGCCTTTGGTTGTGAAATCAATGTCTGTAGTGGGTAGCATTCTGAACATTACTGCACAGCAAAGGCAGACGGTGCGCGTGAAGATATGTCCGCAGGTCACGCAGCATGGTATATGGACCGGCGCGCTTGAGGAGATACTTAATGGATTGAAATGTGAGTTGGAATGTCTGGATTATCAGGGCTCAAGCAAAGGGATGAGGATTGGTCAGCAGATAGTTTGTAGCTGTCTGAAGTTCTTGGCTGAGACATCAGTTTCGTATGATGATGACTCTGCTTCGTGGATGCACCTTTCAACTGCAAAGGTTACTGACTCTTCTGGTTTGCAAAAATGGGAAGACCTTCTTGAGATGTTCAATGACCTCATTGATTGTTTGAAAGATGACAGGGAGTTACTTCTTTATGTGACAAAGGTTGAGGTCATGAAAGAGGGGCTGTCTCAGATCAAGGATGTGTTGGTTGATAAGAGTATCGGATTCAAGGAAGTACGACATCAAGAAAGCCTAGTGCATAAGAAGCTGTCCAAGACATTGGGTCATTCATCCAAGTGTTTGTTCACACTCTTGTTATATTACCTCTATGGGCATGTTAGAGATATTGAAGTAGACTTATCTGGTGGGCTTTATAGCATTAGTGACAAGAGTCTCTGTTTGTGCATGGGAAGGATTGTGACTTCAGATGAGGATACAATGATTTGGAGTGGGGTGAAGCAGTTGGACAGGGCTCTCGGTCTTTTCAAGTTTGTATGGGAAACAGCAGGAATGGAAGGAGTTTTGCAATTGCAAGGCCATATATGGTGTGTAGGAGCTGAGAACAGAACACTTACATATAGAGGAAACACATTCTTTGTACATGGAATTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

46.86

Weight (kDa)

8.35

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25500
fragaria_vesca	FvH4_2g29530
malus_domestica	MD08G1146200.v1.1 MD15G1118500.v1.1 MD15G1119600.v1.1 MD15G1122300.v1.1
prunus_persica	Prupe.1G474900_v2.0.a1
pyrus_communis	pycom07g22650 pycom15g10980 pycom15g11010 pycom15g11020 pycom854g00010
rosa_chinensis	RchiOBHm_Chr6g0298391
rosa_laevigata	RLG00000011517
rosa_multiflora	Rmu_sc0006543.1_g000003 Rmu_sc0028459.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169690
rosa_rugosa	Rorug06G0280400 Rorug06G0280500
rosa_samantha	Rh6AG391500 Rh6BG399100 Rh6CG405200 Rh6DG391600
rosa_wichuraiana	Rw6G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	993
AccII	CGCG	3 cut(s)	240, 468, 515
AciI	CCGC	2 cut(s)	342, 482
AcsI	RAATTY	1 cut(s)	1245
AcuI	CTGAAG	2 cut(s)	641, 1047
AfaI	GTAC	3 cut(s)	80, 876, 1239
AgsI	TTSAA	9 cut(s)	67, 265, 541, 684, 745, 766, 868, 989, 1126
AhdI	GACNNNNNGTC	1 cut(s)	921
AjuI	GAANNNNNNNTTGG	4 cut(s)	533, 565, 926, 958
AluBI	AGCT	4 cut(s)	148, 615, 907, 1196
AluI	AGCT	4 cut(s)	148, 615, 907, 1196
Alw26I	GTCTC	6 cut(s)	101, 102, 297, 629, 831, 1037
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	1 cut(s)	1174
ApeKI	GCWGC	2 cut(s)	391, 493
ApoI	RAATTY	1 cut(s)	1245
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	4 cut(s)	242, 468, 515, 517
AspS9I	GGNCC	2 cut(s)	336, 507
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	25, 395, 1105
AvaII	GGWCC	2 cut(s)	336, 507
BanII	GRGCYC	2 cut(s)	575, 1114
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	403, 505
BccI	CCATC	3 cut(s)	185, 209, 247
BceAI	ACGGC	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	1066
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	6 cut(s)	101, 102, 297, 629, 831, 1037
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	2 cut(s)	117, 417
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	1066
BisI	GCNGC	2 cut(s)	392, 494
BlsI	GCNGC	2 cut(s)	393, 495
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	336, 507
BmeRI	GACNNNNNGTC	1 cut(s)	921
BmgT120I	GGNCC	2 cut(s)	336, 507
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	63, 663
BoxI	GACNNNNGTC	1 cut(s)	1029
BpiI	GAAGAC	1 cut(s)	732
BpuEI	CTTGAG	3 cut(s)	539, 559, 755
BpuMI	CCSGG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	110
BseGI	GGATG	5 cut(s)	356, 591, 678, 844, 929
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	4 cut(s)	102, 624, 842, 1188
BsePI	GCGCGC	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	107, 536
BseXI	GCAGC	2 cut(s)	403, 505
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	3 cut(s)	240, 468, 515
BshFI	GGCC	1 cut(s)	1176
BsiSI	CCGG	2 cut(s)	163, 510
BsmAI	GTCTC	6 cut(s)	101, 102, 297, 629, 831, 1037
BsmI	GAATGC	2 cut(s)	238, 429
BsnI	GGCC	1 cut(s)	1176
Bso31I	GGTCTC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	575, 1114
Bsp1407I	TGTACA	1 cut(s)	1237
Bsp143I	GATC	2 cut(s)	15, 831
BspACI	CCGC	2 cut(s)	342, 482
BspANI	GGCC	1 cut(s)	1176
BspCNI	CTCAG	4 cut(s)	101, 625, 841, 1189
BspFNI	CGCG	3 cut(s)	240, 468, 515
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	1237
BssAI	RCCGGY	1 cut(s)	509
BssHII	GCGCGC	1 cut(s)	513
BssMI	GATC	2 cut(s)	15, 831
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	709
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstAUI	TGTACA	1 cut(s)	1237
BstC8I	GCNNGC	3 cut(s)	117, 238, 515
BstDEI	CTNAG	4 cut(s)	88, 633, 828, 1197
BstF5I	GGATG	5 cut(s)	356, 591, 678, 844, 929
BstFNI	CGCG	3 cut(s)	240, 468, 515
BstHHI	GCGC	4 cut(s)	242, 468, 515, 517
BstKTI	GATC	2 cut(s)	18, 834
BstMAI	GTCTC	6 cut(s)	101, 102, 297, 629, 831, 1037
BstMBI	GATC	2 cut(s)	15, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 490, 904
BstNSI	RCATGY	2 cut(s)	35, 977
BstPAI	GACNNNNGTC	1 cut(s)	1029
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	117, 417
BstUI	CGCG	3 cut(s)	240, 468, 515
BstV1I	GCAGC	2 cut(s)	403, 505
BstV2I	GAAGAC	1 cut(s)	732
BstXI	CCANNNNNNTGG	1 cut(s)	919
BsuI	GTATCC	1 cut(s)	1066
BsuRI	GGCC	1 cut(s)	1176
BtsCI	GGATG	5 cut(s)	356, 591, 678, 844, 929
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	117, 238, 515
CaiI	CAGNNNCTG	1 cut(s)	313
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	4 cut(s)	242, 468, 515, 517
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	336, 507
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	3 cut(s)	79, 875, 1238
CviAII	CATG	9 cut(s)	32, 83, 101, 497, 811, 974, 1045, 1241, 1250
CviQI	GTAC	3 cut(s)	79, 875, 1238
DdeI	CTNAG	4 cut(s)	88, 633, 828, 1197
DpnI	GATC	2 cut(s)	17, 833
DpnII	GATC	2 cut(s)	15, 831
DriI	GACNNNNNGTC	1 cut(s)	921
Eam1104I	CTCTTC	1 cut(s)	709
Eam1105I	GACNNNNNGTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	709
Eco24I	GRGCYC	2 cut(s)	575, 1114
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	336, 507
Eco57I	CTGAAG	2 cut(s)	641, 1047
EcoRI	GAATTC	1 cut(s)	1245
EcoT38I	GRGCYC	2 cut(s)	575, 1114
FaeI	CATG	9 cut(s)	35, 86, 104, 500, 814, 977, 1048, 1244, 1253
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FatI	CATG	9 cut(s)	31, 82, 100, 496, 810, 973, 1044, 1240, 1249
FbaI	TGATCA	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	993
Fnu4HI	GCNGC	2 cut(s)	392, 494
FokI	GGATG	5 cut(s)	363, 598, 685, 851, 916
FriOI	GRGCYC	2 cut(s)	575, 1114
Fsp4HI	GCNGC	2 cut(s)	392, 494
FspBI	CTAG	1 cut(s)	893
GlaI	GCGC	4 cut(s)	241, 467, 514, 516
GluI	GCNGC	2 cut(s)	392, 494
HaeIII	GGCC	1 cut(s)	1176
HapII	CCGG	2 cut(s)	163, 510
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	4 cut(s)	242, 468, 515, 517
Hin1II	CATG	9 cut(s)	35, 86, 104, 500, 814, 977, 1048, 1244, 1253
Hin6I	GCGC	4 cut(s)	240, 466, 513, 515
HinP1I	GCGC	4 cut(s)	240, 466, 513, 515
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	5 cut(s)	95, 659, 701, 864, 1030
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	163, 510
HphI	GGTGA	3 cut(s)	25, 395, 1105
Hpy166II	GTNNAC	3 cut(s)	205, 945, 994
Hpy188I	TCNGA	6 cut(s)	91, 435, 621, 831, 863, 1066
Hpy188III	TCNNGA	4 cut(s)	560, 734, 811, 884
Hpy8I	GTNNAC	3 cut(s)	205, 945, 994
HpyAV	CCTTC	4 cut(s)	127, 740, 1044, 1148
HpyCH4III	ACNGT	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 490, 904
HpyF3I	CTNAG	4 cut(s)	88, 633, 828, 1197
Hsp92II	CATG	9 cut(s)	35, 86, 104, 500, 814, 977, 1048, 1244, 1253
HspAI	GCGC	4 cut(s)	240, 466, 513, 515
Ksp22I	TGATCA	1 cut(s)	15
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	15, 831
LmnI	GCTCC	2 cut(s)	53, 1193
Lsp1109I	GCAGC	2 cut(s)	403, 505
LweI	GCATC	2 cut(s)	63, 663
MaeI	CTAG	1 cut(s)	893
MaeIII	GTNAC	8 cut(s)	267, 353, 487, 694, 780, 793, 1022, 1057
MalI	GATC	2 cut(s)	17, 833
MboI	GATC	2 cut(s)	15, 831
MboII	GAAGA	3 cut(s)	484, 696, 737
MfeI	CAATTG	1 cut(s)	1166
MhlI	GDGCHC	2 cut(s)	575, 1114
MluCI	AATT	2 cut(s)	1166, 1245
MlyI	GAGTC	4 cut(s)	104, 653, 695, 1039
MmeI	TCCRAC	2 cut(s)	531, 1083
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	3 cut(s)	171, 204, 531
MslI	CAYNNNNRTG	1 cut(s)	934
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	2 cut(s)	163, 510
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	1166
Mva1269I	GAATGC	2 cut(s)	238, 429
MvnI	CGCG	3 cut(s)	240, 468, 515
MwoI	GCNNNNNNNGC	3 cut(s)	463, 490, 904
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	15, 831
NlaIII	CATG	9 cut(s)	35, 86, 104, 500, 814, 977, 1048, 1244, 1253
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	5 cut(s)	267, 487, 793, 1022, 1057
NspI	RCATGY	2 cut(s)	35, 977
PagI	TCATGA	1 cut(s)	810
PauI	GCGCGC	1 cut(s)	513
PctI	GAATGC	2 cut(s)	238, 429
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	864
PkrI	GCNGC	2 cut(s)	393, 495
PleI	GAGTC	4 cut(s)	103, 653, 695, 1038
PpsI	GAGTC	4 cut(s)	103, 653, 695, 1038
PshAI	GACNNNNGTC	1 cut(s)	1029
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	336, 507
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	313
PteI	GCGCGC	1 cut(s)	513
RsaI	GTAC	3 cut(s)	80, 876, 1239
RsaNI	GTAC	3 cut(s)	79, 875, 1238
RseI	CAYNNNNRTG	1 cut(s)	934
SaqAI	TTAA	3 cut(s)	171, 204, 531
SatI	GCNGC	2 cut(s)	392, 494
Sau3AI	GATC	2 cut(s)	15, 831
Sau96I	GGNCC	2 cut(s)	336, 507
SchI	GAGTC	4 cut(s)	104, 653, 695, 1039
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	575, 1114
SfaNI	GCATC	2 cut(s)	63, 663
SfcI	CTRYAG	2 cut(s)	117, 417
SinI	GGWCC	2 cut(s)	336, 507
SmiMI	CAYNNNNRTG	1 cut(s)	934
SmlI	CTYRAG	3 cut(s)	518, 574, 734
SmoI	CTYRAG	3 cut(s)	518, 574, 734
Sse9I	AATT	2 cut(s)	1166, 1245
SsiI	CCGC	2 cut(s)	342, 482
SspMI	CTAG	1 cut(s)	893
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	463
TaqII	GACCGA	1 cut(s)	1106
TasI	AATT	2 cut(s)	1166, 1245
TatI	WGTACW	1 cut(s)	1237
TfiI	GAWTC	1 cut(s)	864
Tru1I	TTAA	3 cut(s)	171, 204, 531
Tru9I	TTAA	3 cut(s)	171, 204, 531
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	5 cut(s)	267, 487, 793, 1022, 1057
TseI	GCWGC	2 cut(s)	391, 493
Tsp45I	GTSAC	5 cut(s)	267, 487, 793, 1022, 1057
TspDTI	ATGAA	3 cut(s)	827, 918, 1238
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	336, 507
XapI	RAATTY	1 cut(s)	1245
XceI	RCATGY	2 cut(s)	35, 977
XmiI	GTMKAC	1 cut(s)	993
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.