Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Forward (+)

42775855 .. 42778312

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0280400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCAGAGGAGGGTCATAGGGTTACTTTGAATGTATATGACCTAAGCCAAGGGCTAGCTAGACAGATGTCTATGGCATTCATAGGGAAGGCCATTGAGGGCATATGGCATACAGGAGTCTCAGTTTACGGTAACGAGTACTATTTTGGGGGAGGCATACAACACGCTCCTGCTGGAGCGACACCATATGGGACACCAATTCGGGTGGTAGAATTAGGTGAAACACATGTCCCCAAGGATGTTTTTGAGTCGTATTTACAGGAGATCAGTCCCCGATATACTGCGGAGACCTATAGTCTTCTAACTCACAATTGCAATAACTTTAGCAATGAGGTTGCTCAGTTTTTGGTTGGTGCAACCATACCCGACTATATTCTGCAGCTTCCTAATGAAATTATGAGCAGTCCAATGGGAGCTCTTATATTGCCTATGATTCAAAATTTGGAAATGACTTTGAAAAGTGGCGCTGCTCCTCAAGCTCCACAATTCAGGCCTCCTTCTGCAGTCCAGCCAACAGCTGATGTGACGAAACCCTTGAGTAATTCTAACAATGCGGCTGCTGATAAATCAAAATCTGGAGGGCAGCTCTCCAAGCCGGAGGAGAATAAAAAGTCAGGGAGTTCTCTTAAACCTGGCAATGGGGTTGTAGATCCTCTTGGGGATGCTCGAAGTAAGGTGCAAGAAGAGATTGCGGCTGAATTTGCTGCACTCATGGCAAGTGGAACATTGCGTGCAAGTGAGGCTGCAGCACTGGCAACAAGAAAAGTTATGGAGAGATATGGTCATGCAGGCACACCAATGTCACAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

270

Amino Acids

28.8

Weight (kDa)

5.71

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C97	PF05903	6 - 145	1.5e-49	PPPDE putative peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	284, 554, 692
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	439, 698
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	31, 437, 457
AhdI	GACNNNNNGTC	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	6 cut(s)	59, 382, 416, 479, 518, 586
AluI	AGCT	6 cut(s)	59, 382, 416, 479, 518, 586
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	124, 281
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	2 cut(s)	90, 491
ApeKI	GCWGC	7 cut(s)	379, 467, 557, 583, 704, 743, 746
ApoI	RAATTY	2 cut(s)	439, 698
AspLEI	GCGC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	7 cut(s)	391, 454, 544, 595, 691, 730, 758
BciT130I	CCWGG	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	124, 281
BfaI	CTAG	2 cut(s)	56, 60
BfmI	CTRYAG	4 cut(s)	292, 377, 501, 744
BfoI	RGCGCY	1 cut(s)	468
BisI	GCNGC	9 cut(s)	380, 468, 555, 558, 584, 693, 705, 744, 747
BlsI	GCNGC	9 cut(s)	381, 469, 556, 559, 585, 694, 706, 745, 748
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	633
BmeRI	GACNNNNNGTC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	1 cut(s)	652
BmtI	GCTAGC	1 cut(s)	59
BoxI	GACNNNNGTC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	570, 602
BpmI	CTGGAG	2 cut(s)	195, 597
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	459, 556
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	49, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	3 cut(s)	334, 643, 725
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	2 cut(s)	49, 234
BseGI	GGATG	2 cut(s)	244, 667
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	3 cut(s)	334, 643, 725
BseMII	CTCAG	2 cut(s)	135, 353
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	3 cut(s)	23, 462, 614
BseXI	GCAGC	7 cut(s)	391, 454, 544, 595, 691, 730, 758
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	92, 493
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	3 cut(s)	205, 215, 255
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	2 cut(s)	124, 281
BsmFI	GGGAC	3 cut(s)	205, 215, 255
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	92, 493
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	264, 649
BspACI	CCGC	3 cut(s)	284, 554, 692
BspANI	GGCC	2 cut(s)	92, 493
BspCNI	CTCAG	2 cut(s)	134, 352
BspMAI	CTGCAG	3 cut(s)	381, 505, 748
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	644
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	3 cut(s)	334, 643, 725
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	49, 234
BssMI	GATC	2 cut(s)	264, 649
BssT1I	CCWWGG	2 cut(s)	49, 234
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	57, 732, 790
BstDEI	CTNAG	3 cut(s)	44, 121, 339
BstF5I	GGATG	2 cut(s)	244, 667
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	2 cut(s)	267, 652
BstMAI	GTCTC	2 cut(s)	124, 281
BstMBI	GATC	2 cut(s)	264, 649
BstMWI	GCNNNNNNNGC	6 cut(s)	476, 592, 701, 713, 740, 752
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	4 cut(s)	292, 377, 501, 744
BstV1I	GCAGC	7 cut(s)	391, 454, 544, 595, 691, 730, 758
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	92, 493
BtsCI	GGATG	2 cut(s)	244, 667
BtsIMutI	CAGTG	1 cut(s)	749
Cac8I	GCNNGC	3 cut(s)	57, 732, 790
CfoI	GCGC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	139
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	3 cut(s)	227, 712, 785
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	3 cut(s)	44, 121, 339
DpnI	GATC	2 cut(s)	266, 651
DpnII	GATC	2 cut(s)	264, 649
DriI	GACNNNNNGTC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	678
Eam1105I	GACNNNNNGTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	49, 234
Eco147I	AGGCCT	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	49, 234
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	49, 234
FaeI	CATG	3 cut(s)	230, 715, 788
FaqI	GGGAC	3 cut(s)	205, 215, 255
FatI	CATG	3 cut(s)	226, 711, 784
FauNDI	CATATG	2 cut(s)	104, 187
Fnu4HI	GCNGC	9 cut(s)	380, 468, 555, 558, 584, 693, 705, 744, 747
FokI	GGATG	2 cut(s)	251, 674
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	9 cut(s)	380, 468, 555, 558, 584, 693, 705, 744, 747
FspBI	CTAG	2 cut(s)	56, 60
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	9 cut(s)	380, 468, 555, 558, 584, 693, 705, 744, 747
GsuI	CTGGAG	2 cut(s)	195, 597
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	92, 493
HapII	CCGG	1 cut(s)	596
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	230, 715, 788
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HinfI	GANTC	3 cut(s)	117, 248, 433
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	82, 507
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	9 cut(s)	315, 356, 379, 503, 679, 707, 734, 746, 788
HpyF10VI	GCNNNNNNNGC	6 cut(s)	476, 592, 701, 713, 740, 752
HpyF3I	CTNAG	3 cut(s)	44, 121, 339
Hsp92II	CATG	3 cut(s)	230, 715, 788
HspAI	GCGC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	264, 649
LmnI	GCTCC	5 cut(s)	172, 176, 413, 475, 484
Lsp1109I	GCAGC	7 cut(s)	391, 454, 544, 595, 691, 730, 758
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	56, 60
MaeIII	GTNAC	4 cut(s)	22, 131, 523, 801
MalI	GATC	2 cut(s)	266, 651
MboI	GATC	2 cut(s)	264, 649
MboII	GAAGA	2 cut(s)	290, 695
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	8 cut(s)	198, 212, 310, 393, 439, 485, 541, 698
MlyI	GAGTC	2 cut(s)	126, 257
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	6 cut(s)	476, 592, 701, 713, 740, 752
NdeI	CATATG	2 cut(s)	104, 187
NdeII	GATC	2 cut(s)	264, 649
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	230, 715, 788
NmuCI	GTSAC	2 cut(s)	523, 801
NspI	RCATGY	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	493
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	9 cut(s)	381, 469, 556, 559, 585, 694, 706, 745, 748
PleI	GAGTC	2 cut(s)	125, 256
PpsI	GAGTC	2 cut(s)	125, 256
PscI	ACATGT	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PstI	CTGCAG	3 cut(s)	381, 505, 748
PsuI	RGATCY	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	797
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	9 cut(s)	380, 468, 555, 558, 584, 693, 705, 744, 747
Sau3AI	GATC	2 cut(s)	264, 649
ScaI	AGTACT	1 cut(s)	140
SchI	GAGTC	2 cut(s)	126, 257
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	4 cut(s)	292, 377, 501, 744
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	474, 535
SmoI	CTYRAG	2 cut(s)	474, 535
Sse9I	AATT	8 cut(s)	198, 212, 310, 393, 439, 485, 541, 698
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	284, 554, 692
SspMI	CTAG	2 cut(s)	56, 60
SstI	GAGCTC	1 cut(s)	418
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	49, 234
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	667
TasI	AATT	8 cut(s)	198, 212, 310, 393, 439, 485, 541, 698
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	2 cut(s)	557, 695
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	2 cut(s)	523, 801
TseI	GCWGC	7 cut(s)	379, 467, 557, 583, 704, 743, 746
Tsp45I	GTSAC	2 cut(s)	523, 801
TspDTI	ATGAA	2 cut(s)	70, 405
TspRI	CASTG	1 cut(s)	756
XapI	RAATTY	2 cut(s)	439, 698
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	2 cut(s)	56, 60
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.