RLG00000011518

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
10200276 .. 10202977
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011518

Sequence Viewer

Length: 1401 bp
ATGACAATGCAGAGGCTGCTCTTGAAAAAGGCCTTTGGAGAAGTTAAGCCCAAGTCTTTGTGCTGCTTTTTCTCTACAGCACCACCTTCATTGCCAGCTTTTGATCATGAGCCAAAGCCTTACAATGGTCCACGCGCAGATGAGGTCTTCCAGAAGCGAAAGCAGTTTCTGGGTCCTTCTCTTTTTCACTTTTATCAGAAGCCACTCAATATTGTTGAAGGAAAGATGCAATATTTGTATGATGAGAATGGCAGGCGTTACCTTGATGCATTTGCTGGGATAGTGACGGTTTCTGCTGGACATTGCCATCCAGATGTTTTAAATGCGATCTTTGAGCAGAGCAAGCTTTTGCAGCATGCCACAACTATATATTTACACCATGCAATAGCTGATTTTGCAGAGGCATTGGCTTCAAAATTTCCTGGAAATCTAAAGGTAGTGTACTTTGTGAATTCTGGGTCAGAAGCAAATGAGTTAGCAATGCTGATGGCTCGTCTATACACTGGTAGTCTGCAAATGATTTCTCTGAGAAATGGATATCATGGAGGAAGTTCTAATACAATGAGTTTGACGGCACTCAACACATGGAAGTATCCAATTCCACAGGGTGAAATTCATCATGCTGTGAATCCAGATCCATACCGTGGAGTCTTTGGCTCTGATGCAAGAAGTTATGCAAAAGATGTGCAAGATCACATTGATTTTGGAACTGCAGGAAAAGTGGCTGGATTTATATCTGAAACAATTCAGGGTGTTGGAGGAGCAGTTGAACTGGCTCCTGGATACCTAAAATTGGTATACGACATTGTTCGCAAGGCTGGTGGTGTCTGCATTGCTGATGAAGTTCAAACTGGATTTGGCCGCACAGGAACTCATTATTGGGGCTTTGAAACACAGGGGGTCATTCCTGATATAGTTACTATGGCAAAGGGCATTGGAAATGGATTGCCATTGGGAGCAGTGGTGACAACACCAGAAATAGCAAGTGTACTAGCCCAGAAGACTCAATTCAACACTTATGGTGGAAACCCTGTATGCTCTGCAGGAGGACTTGCTGTGCTCAGAGTTATTGATAAAGAGAAACGTCAAGTTCATTCTGCAGATGTTGGCTCTCATTTGCTTGCTCGGTTGAGAGATCTTCAGCAAAGATATGAAATCATTGGAGATGTGAGAGGCCGGGGCTTAATGGTTGGGGTAGAACTTGTGACTGACAGGAATGAGAAGACACCTGCCAAGGCCGAAACTGCTATGTTGTTTGAGAAACTCAGAGAGCTTGGAGTTCTAGTTGGGAAAGGGGGACTTCATGGAAATGTTTTCAGGATAAAACCACCACTGTGTTTCACCAAAGATGATGCAGATTTTCTTGTCGATGCTTTGGACTATTCAATGTCAAAATTGTGA

Protein Analysis

467

Amino Acids

50.93

Weight (kDa)

8.35

Isoelectric Point (pI)

22.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 68 - 459 4.8e-89 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1237
Acc36I ACCTGC 1 cut(s) 1237
AccB7I CCANNNNNTGG 1 cut(s) 644
AccI GTMKAC 1 cut(s) 798
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 862
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 3 cut(s) 416, 451, 612
AcuI CTGAAG 1 cut(s) 1124
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 2 cut(s) 443, 990
AfiI CCNNNNNNNGG 3 cut(s) 125, 644, 793
AgsI TTSAA 8 cut(s) 25, 218, 414, 770, 848, 890, 1012, 1386
AjnI CCWGG 2 cut(s) 421, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AleI CACNNNNGTG 1 cut(s) 1333
AluBI AGCT 4 cut(s) 98, 346, 389, 1273
AluI AGCT 4 cut(s) 98, 346, 389, 1273
Alw21I GWGCWC 1 cut(s) 1062
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 2 cut(s) 16, 169
AoxI GGCC 4 cut(s) 30, 859, 1174, 1236
ApeKI GCWGC 3 cut(s) 16, 63, 352
ApoI RAATTY 3 cut(s) 416, 451, 612
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 128, 173
AsuC2I CCSGG 1 cut(s) 1178
AsuHPI GGTGA 3 cut(s) 620, 976, 1333
AvaII GGWCC 2 cut(s) 128, 173
BarI GAAGNNNNNNTAC 2 cut(s) 541, 573
BbsI GAAGAC 3 cut(s) 139, 1007, 1229
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 3 cut(s) 3, 50, 364
BccI CCATC 2 cut(s) 315, 481
BceAI ACGGC 1 cut(s) 588
BciT130I CCWGG 2 cut(s) 423, 780
BciVI GTATCC 2 cut(s) 603, 776
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 1178
BfaI CTAG 2 cut(s) 992, 1283
BfmI CTRYAG 4 cut(s) 75, 711, 1041, 1098
BfuAI ACCTGC 1 cut(s) 1237
BfuI GTATCC 2 cut(s) 603, 776
BglII AGATCT 1 cut(s) 1135
BisI GCNGC 4 cut(s) 17, 64, 353, 862
BlsI GCNGC 4 cut(s) 18, 65, 354, 863
Bme1390I CCNGG 3 cut(s) 423, 780, 1178
Bme18I GGWCC 2 cut(s) 128, 173
BmgT120I GGNCC 2 cut(s) 128, 173
BmiI GGNNCC 2 cut(s) 174, 777
BmrFI CCNGG 3 cut(s) 423, 780, 1178
BmsI GCATC 5 cut(s) 216, 256, 652, 1342, 1360
BpiI GAAGAC 3 cut(s) 139, 1007, 1229
BpuMI CCSGG 1 cut(s) 1178
BsaBI GATNNNNATC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 643, 1177, 1233
BsaXI ACNNNNNCTCC 6 cut(s) 750, 780, 948, 978, 1269, 1299
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 644, 793
Bse1I ACTGG 3 cut(s) 508, 777, 856
Bse3DI GCAATG 4 cut(s) 89, 301, 486, 831
Bse8I GATNNNNATC 1 cut(s) 733
BseBI CCWGG 2 cut(s) 423, 780
BseDI CCNNGG 3 cut(s) 643, 1177, 1233
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 125, 644, 793
BseMI GCAATG 4 cut(s) 89, 301, 486, 831
BseMII CTCAG 3 cut(s) 518, 1075, 1279
BseNI ACTGG 3 cut(s) 508, 777, 856
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 3 cut(s) 3, 50, 364
BseYI CCCAGC 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 32, 861, 1176, 1238
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 1177
BslFI GGGAC 1 cut(s) 1311
BslI CCNNNNNNNGG 3 cut(s) 125, 644, 793
BsmFI GGGAC 1 cut(s) 1311
BsnI GGCC 4 cut(s) 32, 861, 1176, 1238
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp143I GATC 5 cut(s) 103, 327, 634, 691, 1135
BspACI CCGC 1 cut(s) 862
BspANI GGCC 4 cut(s) 32, 861, 1176, 1238
BspCNI CTCAG 3 cut(s) 519, 1074, 1278
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 174, 777
BspMAI CTGCAG 3 cut(s) 715, 1045, 1102
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 1 cut(s) 629
BsrDI GCAATG 4 cut(s) 89, 301, 486, 831
BsrI ACTGG 3 cut(s) 508, 777, 856
BssECI CCNNGG 3 cut(s) 643, 1177, 1233
BssMI GATC 5 cut(s) 103, 327, 634, 691, 1135
BssNAI GTATAC 1 cut(s) 799
BssT1I CCWWGG 1 cut(s) 1233
Bst1107I GTATAC 1 cut(s) 799
Bst2UI CCWGG 2 cut(s) 423, 780
Bst4CI ACNGT 3 cut(s) 289, 644, 1335
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 5 cut(s) 96, 254, 344, 357, 1122
BstDEI CTNAG 3 cut(s) 527, 1061, 1265
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 5 cut(s) 106, 330, 637, 694, 1138
BstMBI GATC 5 cut(s) 103, 327, 634, 691, 1135
BstMWI GCNNNNNNNGC 5 cut(s) 16, 343, 352, 395, 1244
BstNI CCWGG 2 cut(s) 423, 780
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 421, 778, 1176
BstSFI CTRYAG 4 cut(s) 75, 711, 1041, 1098
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 3, 50, 364
BstV2I GAAGAC 3 cut(s) 139, 1007, 1229
BstX2I RGATCY 2 cut(s) 634, 1135
BstYI RGATCY 2 cut(s) 634, 1135
BstZ17I GTATAC 1 cut(s) 799
BsuI GTATCC 2 cut(s) 603, 776
BsuRI GGCC 4 cut(s) 32, 861, 1176, 1238
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 3 cut(s) 501, 966, 1331
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 5 cut(s) 96, 254, 344, 357, 1122
CaiI CAGNNNCTG 2 cut(s) 16, 169
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 128, 173
Csp6I GTAC 2 cut(s) 442, 989
CspCI CAANNNNNGTGG 4 cut(s) 72, 107, 802, 837
CviAII CATG 7 cut(s) 107, 356, 380, 542, 585, 620, 1304
CviQI GTAC 2 cut(s) 442, 989
DdeI CTNAG 3 cut(s) 527, 1061, 1265
DpnI GATC 5 cut(s) 105, 329, 636, 693, 1137
DpnII GATC 5 cut(s) 103, 327, 634, 691, 1135
DraI TTTAAA 1 cut(s) 321
DraIII CACNNNGTG 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 1233
Eco147I AGGCCT 1 cut(s) 32
Eco32I GATATC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 128, 173
Eco57I CTGAAG 1 cut(s) 1124
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 421, 778
EcoRV GATATC 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 1233
EcoT22I ATGCAT 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 1233
FaeI CATG 7 cut(s) 110, 359, 383, 545, 588, 623, 1307
FalI AAGNNNNNCTT 2 cut(s) 1284, 1316
FaqI GGGAC 1 cut(s) 1311
FatI CATG 7 cut(s) 106, 355, 379, 541, 584, 619, 1303
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 4 cut(s) 17, 64, 353, 862
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 4 cut(s) 17, 64, 353, 862
FspBI CTAG 2 cut(s) 992, 1283
GlaI GCGC 1 cut(s) 136
GluI GCNGC 4 cut(s) 17, 64, 353, 862
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 4 cut(s) 32, 861, 1176, 1238
HapII CCGG 1 cut(s) 1177
HhaI GCGC 1 cut(s) 137
Hin1II CATG 7 cut(s) 110, 359, 383, 545, 588, 623, 1307
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 3 cut(s) 628, 648, 1003
HpaII CCGG 1 cut(s) 1177
HphI GGTGA 3 cut(s) 620, 976, 1333
Hpy166II GTNNAC 4 cut(s) 131, 442, 799, 989
Hpy188I TCNGA 7 cut(s) 198, 463, 528, 661, 739, 1064, 1268
Hpy188III TCNNGA 7 cut(s) 22, 107, 151, 311, 632, 908, 1318
Hpy8I GTNNAC 4 cut(s) 131, 442, 799, 989
HpyAV CCTTC 3 cut(s) 96, 186, 212
HpyCH4III ACNGT 3 cut(s) 289, 644, 1335
HpyCH4IV ACGT 1 cut(s) 1084
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 343, 352, 395, 1244
HpyF3I CTNAG 3 cut(s) 527, 1061, 1265
HpySE526I ACGT 1 cut(s) 1084
Hsp92II CATG 7 cut(s) 110, 359, 383, 545, 588, 623, 1307
HspAI GCGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 5 cut(s) 103, 327, 634, 691, 1135
LmnI GCTCC 3 cut(s) 761, 781, 956
Lsp1109I GCAGC 3 cut(s) 3, 50, 364
LweI GCATC 5 cut(s) 216, 256, 652, 1342, 1360
MaeI CTAG 2 cut(s) 992, 1283
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 5 cut(s) 257, 283, 916, 964, 1204
MalI GATC 5 cut(s) 105, 329, 636, 693, 1137
MboI GATC 5 cut(s) 103, 327, 634, 691, 1135
MboII GAAGA 4 cut(s) 139, 1012, 1130, 1234
MflI RGATCY 2 cut(s) 634, 1135
MhlI GDGCHC 1 cut(s) 1062
MluCI AATT 8 cut(s) 416, 451, 597, 612, 744, 791, 1007, 1394
MlyI GAGTC 2 cut(s) 657, 997
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 7 cut(s) 6, 136, 394, 539, 752, 1040, 1166
Mph1103I ATGCAT 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 3 cut(s) 45, 320, 1184
MslI CAYNNNNRTG 3 cut(s) 312, 1308, 1333
MspI CCGG 1 cut(s) 1177
MspR9I CCNGG 3 cut(s) 423, 780, 1178
MvaI CCWGG 2 cut(s) 423, 780
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 5 cut(s) 16, 343, 352, 395, 1244
NciI CCSGG 1 cut(s) 1178
NdeII GATC 5 cut(s) 103, 327, 634, 691, 1135
NlaIII CATG 7 cut(s) 110, 359, 383, 545, 588, 623, 1307
NlaIV GGNNCC 2 cut(s) 174, 777
NmuCI GTSAC 3 cut(s) 283, 964, 1204
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 1333
PaeI GCATGC 1 cut(s) 359
PagI TCATGA 1 cut(s) 106
PaqCI CACCTGC 1 cut(s) 1237
PceI AGGCCT 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 1 cut(s) 628
PflMI CCANNNNNTGG 1 cut(s) 644
PfoI TCCNGGA 2 cut(s) 421, 778
PkrI GCNGC 4 cut(s) 18, 65, 354, 863
PleI GAGTC 2 cut(s) 656, 997
PpsI GAGTC 2 cut(s) 656, 997
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 421, 778
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 421, 778
PspN4I GGNNCC 2 cut(s) 174, 777
PspPI GGNCC 2 cut(s) 128, 173
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 3 cut(s) 715, 1045, 1102
PstNI CAGNNNCTG 2 cut(s) 16, 169
PsuI RGATCY 2 cut(s) 634, 1135
RsaI GTAC 2 cut(s) 443, 990
RsaNI GTAC 2 cut(s) 442, 989
RseI CAYNNNNRTG 3 cut(s) 312, 1308, 1333
SaqAI TTAA 3 cut(s) 45, 320, 1184
SatI GCNGC 4 cut(s) 17, 64, 353, 862
Sau3AI GATC 5 cut(s) 103, 327, 634, 691, 1135
Sau96I GGNCC 2 cut(s) 128, 173
SchI GAGTC 2 cut(s) 657, 997
ScrFI CCNGG 3 cut(s) 423, 780, 1178
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 5 cut(s) 216, 256, 652, 1342, 1360
SfcI CTRYAG 4 cut(s) 75, 711, 1041, 1098
SinI GGWCC 2 cut(s) 128, 173
SmiMI CAYNNNNRTG 3 cut(s) 312, 1308, 1333
SphI GCATGC 1 cut(s) 359
Sse9I AATT 8 cut(s) 416, 451, 597, 612, 744, 791, 1007, 1394
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 1 cut(s) 862
SspI AATATT 2 cut(s) 211, 233
SspMI CTAG 2 cut(s) 992, 1283
StuI AGGCCT 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 421, 778, 1176
StyI CCWWGG 1 cut(s) 1233
TaaI ACNGT 3 cut(s) 289, 644, 1335
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 1 cut(s) 1368
TasI AATT 8 cut(s) 416, 451, 597, 612, 744, 791, 1007, 1394
TatI WGTACW 2 cut(s) 441, 988
TauI GCSGC 1 cut(s) 864
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 3 cut(s) 45, 320, 1184
Tru9I TTAA 3 cut(s) 45, 320, 1184
TscAI CASTG 3 cut(s) 508, 966, 1338
TseFI GTSAC 3 cut(s) 283, 964, 1204
TseI GCWGC 3 cut(s) 16, 63, 352
Tsp45I GTSAC 3 cut(s) 283, 964, 1204
TspDTI ATGAA 6 cut(s) 78, 605, 855, 1082, 1167, 1292
TspRI CASTG 3 cut(s) 508, 966, 1338
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 128, 173
XapI RAATTY 3 cut(s) 416, 451, 612
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 992, 1283
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.