Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Reverse (-)

42756030 .. 42759047

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0280100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAAAATCATCTCATCGAGTCGGAGGAATTCTCCGACCGCTTCGTCTGCTGCGTGTGTCTGGAACTTCTGTACAAGCCTATCGTGCTCTCCTGTGGGCACGTTTCGTGTTTCTGGTGCGTGCATCGATCCATGAGTGGTGAAAAGCATTCTCATTGCCCGCTTTGTAGGCATCCCTATAATCACTTTCCGACTATATGTCACTTGCTTCATTGTTTACTGCTCAACTTGTATCCTGTTGCTTATAACAAGAGGGAATTGCAACTTCTAGAACAAGAGAAGAAAACTGGCTACTTCTCACCACAGCTTGATGCTCAGGCTTGGAGCTCACAAGCTAATCAAGACTCAAATATTCTGGGCGGCTCTGTAAGCAAAGAGTTGAGTGCAAATATGGAGGAAACAGATTTCGATTCATATAATCTAAACAATGGCACAGCGGTTTCTAGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGAGCAAGTAAAGAATCCCCTGTTATCTCAGCAGCAGAGCGGAAGTCCCAAGCAGATTTCAGTTGCAAATGTGCTTTGTGCTGCTTGCAAAGAACTGCTGTTTCGTCCTGTGGTTCTTAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCAAACAAGATGAAGAGAAGATTACATGTCAAGTTTGTCAAAGTTTCCATCCAACCGGATATCCAAAAGTTTGTTTGGATCTGCAAAACTTTTTGATCGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCGTAACCATGTTAATCCAACTACATGTGAAAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCATCGGGTTCATATCACAGAGGAGTTGGCTGTGATTATTGTGGGATGTATCCGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATTGGATTTGACCTTTGCAATGATTGTTATAATACTAATTCCAAGCTTCCAGGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTAAACGCGGTGACAATATTCGTGGTCAGTTAAGGAGAATGAGTGAGCGGTTAGGGGATGGTTCTTTTGCTGTTTTACTGGCTCACATGTCAGGGATTCCAGAGGAAGATGCTGGGAATAGAGAGATCCCCCATGCTCCCTCCACCAATAGTGAAAATGATGAGGATGATCAAGATGGCTCTCAACCAAGTTTTCAGCACGGTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

414

Amino Acids

46.56

Weight (kDa)

5.61

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	16 - 61	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	17 - 56	3.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	189 - 226	7.7e-06	zinc finger of C3HC4-type, RING
zf-RING_UBOX	PF13445	189 - 223	4.4e-07	RING-type zinc-finger
ZZ	PF00569	287 - 327	4.1e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	246, 969
AasI	GACNNNNNNGTC	1 cut(s)	44
AccBSI	CCGCTC	2 cut(s)	528, 1081
AccII	CGCG	1 cut(s)	1041
AciI	CCGC	7 cut(s)	40, 161, 360, 437, 528, 1041, 1081
AclWI	GGATC	3 cut(s)	123, 726, 1153
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	2 cut(s)	74, 780
AfiI	CCNNNNNNNGG	2 cut(s)	455, 902
AflIII	ACRYGT	3 cut(s)	665, 806, 1119
AgeI	ACCGGT	1 cut(s)	915
AhdI	GACNNNNNGTC	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	5 cut(s)	307, 327, 335, 985, 1033
AluI	AGCT	5 cut(s)	307, 327, 335, 985, 1033
Alw21I	GWGCWC	2 cut(s)	90, 329
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	3 cut(s)	123, 726, 1153
AoxI	GGCC	2 cut(s)	446, 613
ApeKI	GCWGC	3 cut(s)	51, 520, 569
ApoI	RAATTY	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	744
AsuHPI	GGTGA	3 cut(s)	152, 291, 1055
BaeGI	GKGCMC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	90, 329
BbvI	GCAGC	3 cut(s)	38, 532, 556
BccI	CCATC	5 cut(s)	449, 696, 767, 1085, 1202
BciT130I	CCWGG	1 cut(s)	990
BciVI	GTATCC	2 cut(s)	243, 903
BclI	TGATCA	1 cut(s)	1201
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	2 cut(s)	269, 444
BfuI	GTATCC	2 cut(s)	243, 903
BisI	GCNGC	4 cut(s)	52, 361, 521, 570
BlsI	GCNGC	4 cut(s)	53, 362, 522, 571
Bme1390I	CCNGG	1 cut(s)	990
BmeRI	GACNNNNNGTC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	990
BmsI	GCATC	4 cut(s)	133, 181, 301, 1132
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bpu10I	CCTNAGC	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	695, 915
BsaXI	ACNNNNNCTCC	2 cut(s)	1060, 1090
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 902
Bse118I	RCCGGY	1 cut(s)	915
Bse1I	ACTGG	3 cut(s)	292, 1024, 1116
Bse3DI	GCAATG	2 cut(s)	154, 964
BseBI	CCWGG	1 cut(s)	990
BseCI	ATCGAT	1 cut(s)	127
BseGI	GGATG	5 cut(s)	172, 688, 894, 1096, 1204
BseLI	CCNNNNNNNGG	2 cut(s)	455, 902
BseMI	GCAATG	2 cut(s)	154, 964
BseMII	CTCAG	3 cut(s)	329, 480, 530
BseNI	ACTGG	3 cut(s)	292, 1024, 1116
BseRI	GAGGAG	1 cut(s)	879
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	38, 532, 556
BseYI	CCCAGC	1 cut(s)	1145
Bsh1236I	CGCG	1 cut(s)	1041
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	448, 615
BshTI	ACCGGT	1 cut(s)	915
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	90, 329
BsiSI	CCGG	2 cut(s)	696, 916
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	455, 902
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	448, 615
Bsp1286I	GDGCHC	3 cut(s)	90, 102, 329
Bsp1407I	TGTACA	2 cut(s)	72, 778
Bsp143I	GATC	5 cut(s)	128, 718, 735, 1158, 1201
BspACI	CCGC	7 cut(s)	40, 161, 360, 437, 528, 1041, 1081
BspANI	GGCC	2 cut(s)	448, 615
BspCNI	CTCAG	3 cut(s)	328, 481, 529
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	1041
BspPI	GGATC	3 cut(s)	123, 726, 1153
BsrBI	CCGCTC	2 cut(s)	528, 1081
BsrDI	GCAATG	2 cut(s)	154, 964
BsrFI	RCCGGY	1 cut(s)	915
BsrGI	TGTACA	2 cut(s)	72, 778
BsrI	ACTGG	3 cut(s)	292, 1024, 1116
BssAI	RCCGGY	1 cut(s)	915
BssMI	GATC	5 cut(s)	128, 718, 735, 1158, 1201
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	3 cut(s)	611, 744, 1235
Bst6I	CTCTTC	2 cut(s)	648, 763
BstAUI	TGTACA	2 cut(s)	72, 778
BstC8I	GCNNGC	3 cut(s)	122, 161, 574
BstDEI	CTNAG	3 cut(s)	315, 489, 516
BstF5I	GGATG	5 cut(s)	172, 688, 894, 1096, 1204
BstFNI	CGCG	1 cut(s)	1041
BstKTI	GATC	5 cut(s)	131, 721, 738, 1161, 1204
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	5 cut(s)	128, 718, 735, 1158, 1201
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 85, 169, 369
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	3 cut(s)	669, 810, 1123
BstSCI	CCNGG	1 cut(s)	988
BstSLI	GKGCMC	1 cut(s)	102
BstUI	CGCG	1 cut(s)	1041
BstV1I	GCAGC	3 cut(s)	38, 532, 556
BstX2I	RGATCY	2 cut(s)	718, 1158
BstYI	RGATCY	2 cut(s)	718, 1158
Bsu15I	ATCGAT	1 cut(s)	127
BsuI	GTATCC	2 cut(s)	243, 903
BsuRI	GGCC	2 cut(s)	448, 615
BsuTUI	ATCGAT	1 cut(s)	127
BtsCI	GGATG	5 cut(s)	172, 688, 894, 1096, 1204
Cac8I	GCNNGC	3 cut(s)	122, 161, 574
Cfr10I	RCCGGY	1 cut(s)	915
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	73, 779
CspAI	ACCGGT	1 cut(s)	915
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviAII	CATG	7 cut(s)	133, 617, 666, 791, 807, 1120, 1166
CviQI	GTAC	2 cut(s)	73, 779
DdeI	CTNAG	3 cut(s)	315, 489, 516
DpnI	GATC	5 cut(s)	130, 720, 737, 1160, 1203
DpnII	GATC	5 cut(s)	128, 718, 735, 1158, 1201
DrdI	GACNNNNNNGTC	1 cut(s)	44
DriI	GACNNNNNGTC	1 cut(s)	198
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	648, 763
Eam1105I	GACNNNNNGTC	1 cut(s)	198
EarI	CTCTTC	2 cut(s)	648, 763
Ecl136II	GAGCTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	701
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	988
EcoRV	GATATC	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	7 cut(s)	136, 620, 669, 794, 810, 1123, 1169
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	7 cut(s)	132, 616, 665, 790, 806, 1119, 1165
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	1201
Fnu4HI	GCNGC	4 cut(s)	52, 361, 521, 570
FokI	GGATG	5 cut(s)	159, 675, 901, 1103, 1211
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	52, 361, 521, 570
FspBI	CTAG	2 cut(s)	269, 444
GluI	GCNGC	4 cut(s)	52, 361, 521, 570
GsaI	CCCAGC	1 cut(s)	1149
HaeIII	GGCC	2 cut(s)	448, 615
HapII	CCGG	2 cut(s)	696, 916
Hin1II	CATG	7 cut(s)	136, 620, 669, 794, 810, 1123, 1169
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	5 cut(s)	20, 344, 410, 502, 1129
HpaII	CCGG	2 cut(s)	696, 916
HphI	GGTGA	3 cut(s)	152, 291, 1055
Hpy166II	GTNNAC	2 cut(s)	218, 779
Hpy188I	TCNGA	4 cut(s)	25, 37, 192, 897
Hpy188III	TCNNGA	5 cut(s)	62, 269, 341, 1133, 1205
Hpy8I	GTNNAC	2 cut(s)	218, 779
HpyCH4III	ACNGT	3 cut(s)	611, 744, 1235
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	9 cut(s)	124, 262, 386, 554, 576, 724, 761, 921, 957
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 85, 169, 369
HpyF3I	CTNAG	3 cut(s)	315, 489, 516
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	7 cut(s)	136, 620, 669, 794, 810, 1123, 1169
Ksp22I	TGATCA	1 cut(s)	1201
Kzo9I	GATC	5 cut(s)	128, 718, 735, 1158, 1201
LmnI	GCTCC	2 cut(s)	324, 1174
Lsp1109I	GCAGC	3 cut(s)	38, 532, 556
LweI	GCATC	4 cut(s)	133, 181, 301, 1132
MaeI	CTAG	2 cut(s)	269, 444
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	200, 484, 785, 1043
MalI	GATC	5 cut(s)	130, 720, 737, 1160, 1203
MbiI	CCGCTC	2 cut(s)	528, 1081
MboI	GATC	5 cut(s)	128, 718, 735, 1158, 1201
MboII	GAAGA	5 cut(s)	292, 665, 670, 780, 1151
MflI	RGATCY	2 cut(s)	718, 1158
MhlI	GDGCHC	3 cut(s)	90, 102, 329
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	5 cut(s)	29, 257, 900, 939, 976
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	2 cut(s)	29, 338
MmeI	TCCRAC	4 cut(s)	60, 215, 716, 824
MnlI	CCTC	8 cut(s)	19, 246, 388, 463, 857, 1129, 1183, 1189
Mox20I	TGGCCA	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	5 cut(s)	606, 795, 999, 1035, 1064
Msp20I	TGGCCA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	2 cut(s)	696, 916
MspR9I	CCNGG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	1041
MwoI	GCNNNNNNNGC	4 cut(s)	48, 85, 169, 369
NdeII	GATC	5 cut(s)	128, 718, 735, 1158, 1201
NlaIII	CATG	7 cut(s)	136, 620, 669, 794, 810, 1123, 1169
NmuCI	GTSAC	2 cut(s)	200, 1043
NspI	RCATGY	3 cut(s)	669, 810, 1123
PceI	AGGCCT	1 cut(s)	448
PciI	ACATGT	3 cut(s)	665, 806, 1119
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	410, 502, 1129
PinAI	ACCGGT	1 cut(s)	915
PkrI	GCNGC	4 cut(s)	53, 362, 522, 571
PleI	GAGTC	2 cut(s)	28, 338
PpsI	GAGTC	2 cut(s)	28, 338
PscI	ACATGT	3 cut(s)	665, 806, 1119
PsiI	TTATAA	2 cut(s)	246, 969
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	988
PspFI	CCCAGC	1 cut(s)	1145
PspGI	CCWGG	1 cut(s)	988
PsuI	RGATCY	2 cut(s)	718, 1158
RsaI	GTAC	2 cut(s)	74, 780
RsaNI	GTAC	2 cut(s)	73, 779
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	5 cut(s)	606, 795, 999, 1035, 1064
SatI	GCNGC	4 cut(s)	52, 361, 521, 570
Sau3AI	GATC	5 cut(s)	128, 718, 735, 1158, 1201
SchI	GAGTC	2 cut(s)	29, 338
ScrFI	CCNGG	1 cut(s)	990
SduI	GDGCHC	3 cut(s)	90, 102, 329
SetI	ASST	8 cut(s)	105, 309, 329, 337, 954, 987, 994, 1035
SfaNI	GCATC	4 cut(s)	133, 181, 301, 1132
Sse9I	AATT	5 cut(s)	29, 257, 900, 939, 976
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	7 cut(s)	40, 161, 360, 437, 528, 1041, 1081
SspI	AATATT	2 cut(s)	352, 1051
SspMI	CTAG	2 cut(s)	269, 444
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	988
TaaI	ACNGT	3 cut(s)	611, 744, 1235
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	5 cut(s)	18, 127, 408, 738, 994
TasI	AATT	5 cut(s)	29, 257, 900, 939, 976
TatI	WGTACW	2 cut(s)	72, 778
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	410, 502, 1129
Tru1I	TTAA	5 cut(s)	606, 795, 999, 1035, 1064
Tru9I	TTAA	5 cut(s)	606, 795, 999, 1035, 1064
TseFI	GTSAC	2 cut(s)	200, 1043
TseI	GCWGC	3 cut(s)	51, 520, 569
Tsp45I	GTSAC	2 cut(s)	200, 1043
TspDTI	ATGAA	4 cut(s)	200, 402, 666, 843
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	3 cut(s)	669, 810, 1123
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	2 cut(s)	269, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.