Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Reverse (-)

42735305 .. 42737254

Gene Structure 1950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0280000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTGCAGAAGAAGAGGAGAAAACTGGCTACTTCTCACCACAGTTTGATGTTCAGGCTTGGAGCTCACAAGCTAATCAAGACACGAATATTCTGGGTGATTCGGCCTACTGATGGTGGAGACTATGAGGGAATGGAGAATGTTACTGATCAAGTAAAGAATCTCATGTTATGTCAGCAGCGGAGTGGAAGCCCCAAGCAGATTTCAGTTGCAGATGTGCTATGTGCTGCATGCAAAGAACTGCTGTTTCGTCCTGTGGTTCTTAACTGTGGCCATGTATATTGTGAAAGTTGTATCGTCAAACAAGATGAAGAGAAGATTAGACGTCAAGTTTGTCAAAGTTTCCATCCAACCGGACTTTTGGATGAGGATCTGCAAAACTTTTTGGTCGAACAGTTTCCTAAAGAACTTGCACATAGAAGAGATGGTGTACAGCTAAAGCATGTTAATCCAACTGCATGTGAAAGCAAAAGCAGTAAAGAAGCAGAGAAGTCATCGGGTTCATATCACATAGGAGTTGGCTGTGATTATTGTGGGATGTATCAGATAATTGGGGATAGATACCGGTGCAAAGATTGTGTGGAGAAAATTGGATTTGACCTTTGCAATGATTGTTATAATACTAGTTCCAAGCTTCCATGTCGATTTAATCAGCAACATACAGCAGAACACCAGTTTGAGCTTATACGCGGCAACATTATTCGTGATCAGTTTAAGGATAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

242

Amino Acids

27.82

Weight (kDa)

8.31

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	75 - 112	4.2e-08	RING-type zinc-finger
zf-C3HC4_4	PF15227	75 - 105	1.2e-06	zinc finger of C3HC4-type, RING
zf-C3HC4_2	PF13923	75 - 102	1e-05	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AatII	GACGTC	1 cut(s)	328
AccII	CGCG	1 cut(s)	690
AciI	CCGC	2 cut(s)	181, 690
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	564
AhlI	ACTAGT	1 cut(s)	623
AluBI	AGCT	5 cut(s)	65, 73, 436, 634, 682
AluI	AGCT	5 cut(s)	65, 73, 436, 634, 682
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	2 cut(s)	104, 271
ApeKI	GCWGC	2 cut(s)	178, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AsiGI	ACCGGT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	29, 109
BalI	TGGCCA	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	190, 214
BccI	CCATC	3 cut(s)	107, 354, 419
BclI	TGATCA	2 cut(s)	148, 706
BcoDI	GTCTC	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	1 cut(s)	624
BisI	GCNGC	3 cut(s)	179, 228, 691
BlsI	GCNGC	3 cut(s)	180, 229, 692
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	325
BsaWI	WCCGGW	2 cut(s)	353, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	2 cut(s)	30, 673
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	369
BseGI	GGATG	3 cut(s)	346, 370, 543
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	613
BseNI	ACTGG	2 cut(s)	30, 673
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	190, 214
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	106, 273
BshTI	ACCGGT	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	354, 565
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	106, 273
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	148, 370, 706
BspACI	CCGC	2 cut(s)	181, 690
BspANI	GGCC	2 cut(s)	106, 273
BspFNI	CGCG	1 cut(s)	690
BspPI	GGATC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	564
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	30, 673
BssAI	RCCGGY	1 cut(s)	564
BssMI	GATC	3 cut(s)	148, 370, 706
BssNI	GRCGYC	1 cut(s)	325
Bst4CI	ACNGT	3 cut(s)	44, 269, 396
Bst6I	CTCTTC	3 cut(s)	8, 306, 415
BstACI	GRCGYC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	346, 370, 543
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	3 cut(s)	151, 373, 709
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	148, 370, 706
BstNSI	RCATGY	3 cut(s)	234, 446, 462
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	190, 214
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	106, 273
BtsCI	GGATG	3 cut(s)	346, 370, 543
Cac8I	GCNNGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	431
CspAI	ACCGGT	1 cut(s)	564
CviAII	CATG	6 cut(s)	166, 231, 275, 443, 459, 639
CviQI	GTAC	1 cut(s)	431
DpnI	GATC	3 cut(s)	150, 372, 708
DpnII	GATC	3 cut(s)	148, 370, 706
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	8, 306, 415
EarI	CTCTTC	3 cut(s)	8, 306, 415
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	6 cut(s)	169, 234, 278, 446, 462, 642
FatI	CATG	6 cut(s)	165, 230, 274, 442, 458, 638
FbaI	TGATCA	2 cut(s)	148, 706
Fnu4HI	GCNGC	3 cut(s)	179, 228, 691
FokI	GGATG	3 cut(s)	333, 377, 550
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	179, 228, 691
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	3 cut(s)	179, 228, 691
HaeIII	GGCC	2 cut(s)	106, 273
HapII	CCGG	2 cut(s)	354, 565
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	6 cut(s)	169, 234, 278, 446, 462, 642
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	100, 160
HpaII	CCGG	2 cut(s)	354, 565
HphI	GGTGA	2 cut(s)	29, 109
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	2 cut(s)	79, 704
Hpy8I	GTNNAC	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	44, 269, 396
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	9 cut(s)	7, 212, 230, 234, 376, 413, 458, 570, 606
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	6 cut(s)	169, 234, 278, 446, 462, 642
Ksp22I	TGATCA	2 cut(s)	148, 706
Kzo9I	GATC	3 cut(s)	148, 370, 706
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	11, 40, 79, 267, 367, 578, 686
Lsp1109I	GCAGC	2 cut(s)	190, 214
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	150, 372, 708
MboI	GATC	3 cut(s)	148, 370, 706
MboII	GAAGA	5 cut(s)	22, 25, 323, 328, 432
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	2 cut(s)	549, 588
MluNI	TGGCCA	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	374, 476
MnlI	CCTC	3 cut(s)	9, 121, 361
Mox20I	TGGCCA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	4 cut(s)	264, 447, 648, 714
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	2 cut(s)	354, 565
MvnI	CGCG	1 cut(s)	690
NdeII	GATC	3 cut(s)	148, 370, 706
NlaIII	CATG	6 cut(s)	169, 234, 278, 446, 462, 642
NspI	RCATGY	3 cut(s)	234, 446, 462
PaeI	GCATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	100, 160
PinAI	ACCGGT	1 cut(s)	564
PkrI	GCNGC	3 cut(s)	180, 229, 692
PsiI	TTATAA	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	264, 447, 648, 714
SatI	GCNGC	3 cut(s)	179, 228, 691
Sau3AI	GATC	3 cut(s)	148, 370, 706
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	7 cut(s)	67, 75, 328, 438, 603, 636, 684
SpeI	ACTAGT	1 cut(s)	623
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	2 cut(s)	549, 588
SsiI	CCGC	2 cut(s)	181, 690
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	67
TaaI	ACNGT	3 cut(s)	44, 269, 396
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	390, 643
TasI	AATT	2 cut(s)	549, 588
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	2 cut(s)	100, 160
Tru1I	TTAA	4 cut(s)	264, 447, 648, 714
Tru9I	TTAA	4 cut(s)	264, 447, 648, 714
TseI	GCWGC	2 cut(s)	178, 227
TspDTI	ATGAA	2 cut(s)	324, 492
XceI	RCATGY	3 cut(s)	234, 446, 462
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	624
ZraI	GACGTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.