Rh6AG390800

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003402
Physical Location & Seq
Forward (+)
58916794 .. 58918844
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG390800.1

Sequence Viewer

Length: 1182 bp
ATGGCATTGCAGAGGCTGCTCTTGAAAAAGGCCTTTGGAGAAGCTAAGCCAAAGTCTCTGTGCTGCTTTTTCTCTACAGCACCACCTTCATTGCCAGCTTTTGATTATGAGCCAAAGCCTTACAATGGTCCACGCGCAGATAAGGTCTTCCAGAAGCGAAAGCAGTTTCTGGGTCCTTCTCTTTTTCACTTTTATCAGAAGCCACTTAATATTGTTGAAGGGAAGATGCAATATTTGTATGATGAGAATGGCAGGCGTTACCTTGATGCATTTGCTGGGATAGTGACGGTTTCTGCTGGACATTGCCATCCAGATGTTTTAAATGCAATCTTTGAGCAGAGCGAGCTTCTGCAGCATGCCACAACTATATATTTACACCATGCAATAGCTGATTTTGCAGAGGCATTGGCTTCAAAATTTCCTGGAAATCTAAAGGTAGTGTACTTTGTGAATTCTGGGTCAGAAGCAAATGAGTTAGCAATGCTGATGGCTCGTCTATACACTGGTAGTCTGGAAATGATTTCTCTGAGAAATGGATATCACGGAGGAAGTTCTAATACAATGAGTTTGACGGCACTCAACACATGGAAGTATCCGATTCCACAGGGTGAAATTCATCATGCTGTGAATCCAGATCCATACCGTGGAGTCTTTGGCTCTGATGCAAAAAGTTATGCTAAAGATGTGCAAGATCACATTGATTTTGGAACTGCAGGAAAAGTGGCCGGATTTATATCTGAAACAATTCAGGGTGTTGGAGGAGCAGTTGAACTGGCTCCTGGATACCTAAAATTGGTATACGACATTGTTCGCAAGGCTGGTGGTGTCTGCATTGCTGATGAAGTTCAAACTGGATTTGGCCGCACAGGAACTCATTATTGGGGCTTTGAAACACAGGGGGTCATTCCTGATATAGTTACTATGGCCAAGGGCATTGGAAATGGATTGCCATTGGGAGCAGTGGTGACAACACCAGAAATAGCAAGTGTACTAGCCCAGAAGACTCAATTCAACACTTATGGTGGAAACCCTGTATGCTCTGCAGGAGGACTTGCAGTGCTCAGAGTTATTGATAAAGAGAAACGTCAAGTTCATTCTGCAGATGTTGGCTCTCATTTGCTTGCTCGGTTGAGAGATCTTCAGCAAAGATATGAAAGTAACTACCTTGATTCCTTGAACTAG

Protein Analysis

393

Amino Acids

42.9

Weight (kDa)

7.69

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 68 - 385 1.3e-71 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 644
AccI GTMKAC 1 cut(s) 798
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 862
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 3 cut(s) 723, 859, 924
AcsI RAATTY 3 cut(s) 416, 451, 612
AcuI CTGAAG 1 cut(s) 1124
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 2 cut(s) 443, 990
AfiI CCNNNNNNNGG 3 cut(s) 125, 644, 793
AgsI TTSAA 8 cut(s) 25, 218, 414, 770, 848, 890, 1012, 1177
AjnI CCWGG 2 cut(s) 421, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AluBI AGCT 4 cut(s) 44, 98, 346, 389
AluI AGCT 4 cut(s) 44, 98, 346, 389
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 2 cut(s) 16, 169
AoxI GGCC 4 cut(s) 30, 723, 859, 924
ApeKI GCWGC 3 cut(s) 16, 63, 352
ApoI RAATTY 3 cut(s) 416, 451, 612
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 128, 173
AsuHPI GGTGA 2 cut(s) 620, 976
AvaII GGWCC 2 cut(s) 128, 173
BalI TGGCCA 1 cut(s) 926
BarI GAAGNNNNNNTAC 2 cut(s) 541, 573
BbsI GAAGAC 2 cut(s) 139, 1007
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 3 cut(s) 3, 50, 364
BccI CCATC 2 cut(s) 315, 481
BceAI ACGGC 1 cut(s) 588
BciT130I CCWGG 2 cut(s) 423, 780
BciVI GTATCC 2 cut(s) 603, 776
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 2 cut(s) 992, 1180
BfmI CTRYAG 5 cut(s) 75, 350, 711, 1041, 1098
BfuI GTATCC 2 cut(s) 603, 776
BglII AGATCT 1 cut(s) 1135
BisI GCNGC 4 cut(s) 17, 64, 353, 862
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 4 cut(s) 18, 65, 354, 863
Bme1390I CCNGG 2 cut(s) 423, 780
Bme18I GGWCC 2 cut(s) 128, 173
BmgT120I GGNCC 2 cut(s) 128, 173
BmiI GGNNCC 2 cut(s) 174, 777
BmrFI CCNGG 2 cut(s) 423, 780
BmsI GCATC 3 cut(s) 216, 256, 652
BpiI GAAGAC 2 cut(s) 139, 1007
Bpu1102I GCTNAGC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 733
BsaJI CCNNGG 2 cut(s) 643, 927
BsaXI ACNNNNNCTCC 4 cut(s) 750, 780, 948, 978
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 644, 793
Bse1I ACTGG 3 cut(s) 508, 777, 856
Bse3DI GCAATG 5 cut(s) 5, 89, 301, 486, 831
Bse8I GATNNNNATC 1 cut(s) 733
BseBI CCWGG 2 cut(s) 423, 780
BseDI CCNNGG 2 cut(s) 643, 927
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 125, 644, 793
BseMI GCAATG 5 cut(s) 5, 89, 301, 486, 831
BseMII CTCAG 2 cut(s) 518, 1075
BseNI ACTGG 3 cut(s) 508, 777, 856
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 3 cut(s) 3, 50, 364
BseYI CCCAGC 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 32, 725, 861, 926
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 125, 644, 793
BsmAI GTCTC 1 cut(s) 60
BsnI GGCC 4 cut(s) 32, 725, 861, 926
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp143I GATC 3 cut(s) 634, 691, 1135
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 1 cut(s) 862
BspANI GGCC 4 cut(s) 32, 725, 861, 926
BspCNI CTCAG 2 cut(s) 519, 1074
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 174, 777
BspMAI CTGCAG 4 cut(s) 354, 715, 1045, 1102
BspPI GGATC 1 cut(s) 629
BsrDI GCAATG 5 cut(s) 5, 89, 301, 486, 831
BsrI ACTGG 3 cut(s) 508, 777, 856
BssECI CCNNGG 2 cut(s) 643, 927
BssMI GATC 3 cut(s) 634, 691, 1135
BssNAI GTATAC 1 cut(s) 799
BssT1I CCWWGG 1 cut(s) 927
Bst1107I GTATAC 1 cut(s) 799
Bst2UI CCWGG 2 cut(s) 423, 780
Bst4CI ACNGT 2 cut(s) 289, 644
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 5 cut(s) 96, 254, 344, 357, 1122
BstDEI CTNAG 3 cut(s) 45, 527, 1061
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 637, 694, 1138
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 3 cut(s) 634, 691, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 16, 343, 352, 395
BstNI CCWGG 2 cut(s) 423, 780
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 421, 778
BstSFI CTRYAG 5 cut(s) 75, 350, 711, 1041, 1098
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 3, 50, 364
BstV2I GAAGAC 2 cut(s) 139, 1007
BstX2I RGATCY 2 cut(s) 634, 1135
BstYI RGATCY 2 cut(s) 634, 1135
BstZ17I GTATAC 1 cut(s) 799
BsuI GTATCC 2 cut(s) 603, 776
BsuRI GGCC 4 cut(s) 32, 725, 861, 926
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 2 cut(s) 966, 1062
BtsIMutI CAGTG 3 cut(s) 501, 966, 1062
Cac8I GCNNGC 5 cut(s) 96, 254, 344, 357, 1122
CaiI CAGNNNCTG 2 cut(s) 16, 169
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 128, 173
Csp6I GTAC 2 cut(s) 442, 989
CspCI CAANNNNNGTGG 4 cut(s) 72, 107, 802, 837
CviAII CATG 4 cut(s) 356, 380, 585, 620
CviQI GTAC 2 cut(s) 442, 989
DdeI CTNAG 3 cut(s) 45, 527, 1061
DpnI GATC 3 cut(s) 636, 693, 1137
DpnII GATC 3 cut(s) 634, 691, 1135
DraI TTTAAA 1 cut(s) 321
DraIII CACNNNGTG 1 cut(s) 608
EaeI YGGCCR 3 cut(s) 723, 859, 924
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 32
Eco32I GATATC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 128, 173
Eco57I CTGAAG 1 cut(s) 1124
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 421, 778
EcoRV GATATC 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 927
EcoT22I ATGCAT 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 4 cut(s) 359, 383, 588, 623
FatI CATG 4 cut(s) 355, 379, 584, 619
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 4 cut(s) 17, 64, 353, 862
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 4 cut(s) 17, 64, 353, 862
FspBI CTAG 2 cut(s) 992, 1180
GlaI GCGC 1 cut(s) 136
GluI GCNGC 4 cut(s) 17, 64, 353, 862
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 4 cut(s) 32, 725, 861, 926
HapII CCGG 1 cut(s) 726
HhaI GCGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 359, 383, 588, 623
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 5 cut(s) 598, 628, 648, 1003, 1169
HpaII CCGG 1 cut(s) 726
HphI GGTGA 2 cut(s) 620, 976
Hpy166II GTNNAC 4 cut(s) 131, 442, 799, 989
Hpy188I TCNGA 7 cut(s) 198, 463, 528, 597, 661, 739, 1064
Hpy188III TCNNGA 6 cut(s) 22, 151, 311, 512, 632, 908
Hpy8I GTNNAC 4 cut(s) 131, 442, 799, 989
HpyAV CCTTC 3 cut(s) 96, 186, 212
HpyCH4III ACNGT 2 cut(s) 289, 644
HpyCH4IV ACGT 1 cut(s) 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 343, 352, 395
HpyF3I CTNAG 3 cut(s) 45, 527, 1061
HpySE526I ACGT 1 cut(s) 1084
Hsp92II CATG 4 cut(s) 359, 383, 588, 623
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 634, 691, 1135
LmnI GCTCC 3 cut(s) 761, 781, 956
Lsp1109I GCAGC 3 cut(s) 3, 50, 364
LweI GCATC 3 cut(s) 216, 256, 652
MaeI CTAG 2 cut(s) 992, 1180
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 5 cut(s) 257, 283, 916, 964, 1157
MalI GATC 3 cut(s) 636, 693, 1137
MboI GATC 3 cut(s) 634, 691, 1135
MboII GAAGA 4 cut(s) 139, 235, 1012, 1130
MflI RGATCY 2 cut(s) 634, 1135
MhlI GDGCHC 1 cut(s) 1062
MlsI TGGCCA 1 cut(s) 926
MluCI AATT 6 cut(s) 416, 451, 612, 744, 791, 1007
MluNI TGGCCA 1 cut(s) 926
MlyI GAGTC 2 cut(s) 657, 997
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 5 cut(s) 6, 394, 539, 752, 1040
Mox20I TGGCCA 1 cut(s) 926
Mph1103I ATGCAT 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 744
MscI TGGCCA 1 cut(s) 926
MseI TTAA 2 cut(s) 207, 320
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 926
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 2 cut(s) 423, 780
MvaI CCWGG 2 cut(s) 423, 780
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 16, 343, 352, 395
NdeII GATC 3 cut(s) 634, 691, 1135
NlaIII CATG 4 cut(s) 359, 383, 588, 623
NlaIV GGNNCC 2 cut(s) 174, 777
NmuCI GTSAC 2 cut(s) 283, 964
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 1 cut(s) 359
PaeI GCATGC 1 cut(s) 359
PceI AGGCCT 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 3 cut(s) 598, 628, 1169
PflMI CCANNNNNTGG 1 cut(s) 644
PfoI TCCNGGA 2 cut(s) 421, 778
PkrI GCNGC 4 cut(s) 18, 65, 354, 863
PleI GAGTC 2 cut(s) 656, 997
PpsI GAGTC 2 cut(s) 656, 997
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 421, 778
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 421, 778
PspN4I GGNNCC 2 cut(s) 174, 777
PspPI GGNCC 2 cut(s) 128, 173
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 4 cut(s) 354, 715, 1045, 1102
PstNI CAGNNNCTG 2 cut(s) 16, 169
PsuI RGATCY 2 cut(s) 634, 1135
RsaI GTAC 2 cut(s) 443, 990
RsaNI GTAC 2 cut(s) 442, 989
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 2 cut(s) 207, 320
SatI GCNGC 4 cut(s) 17, 64, 353, 862
Sau3AI GATC 3 cut(s) 634, 691, 1135
Sau96I GGNCC 2 cut(s) 128, 173
SchI GAGTC 2 cut(s) 657, 997
ScrFI CCNGG 2 cut(s) 423, 780
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 3 cut(s) 216, 256, 652
SfcI CTRYAG 5 cut(s) 75, 350, 711, 1041, 1098
SinI GGWCC 2 cut(s) 128, 173
SmiMI CAYNNNNRTG 1 cut(s) 312
SphI GCATGC 1 cut(s) 359
Sse9I AATT 6 cut(s) 416, 451, 612, 744, 791, 1007
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 1 cut(s) 862
SspI AATATT 2 cut(s) 211, 233
SspMI CTAG 2 cut(s) 992, 1180
StuI AGGCCT 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 421, 778
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 2 cut(s) 289, 644
TaiI ACGT 1 cut(s) 1087
TasI AATT 6 cut(s) 416, 451, 612, 744, 791, 1007
TatI WGTACW 2 cut(s) 441, 988
TauI GCSGC 1 cut(s) 864
TfiI GAWTC 3 cut(s) 598, 628, 1169
Tru1I TTAA 2 cut(s) 207, 320
Tru9I TTAA 2 cut(s) 207, 320
TscAI CASTG 3 cut(s) 508, 966, 1062
TseFI GTSAC 2 cut(s) 283, 964
TseI GCWGC 3 cut(s) 16, 63, 352
Tsp45I GTSAC 2 cut(s) 283, 964
TspDTI ATGAA 5 cut(s) 78, 605, 855, 1082, 1167
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 3 cut(s) 508, 966, 1062
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 128, 173
XapI RAATTY 3 cut(s) 416, 451, 612
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 992, 1180
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.