Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Forward (+)

62643217 .. 62645909

Gene Structure 2693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCATTGCAGAGGCTGCTCTTGAAAAAGGCCTTTGGAGAAGCTAAGCCCAAGTCTCTGTGCTGCTTTTTCTCGACAGCACCACCTTCATTGCCAGCTTTTGATTATGAGCCAAAGCCTTACAATGGAATTGATTTGTGCTTGAGAATTGTGCTTGTGTTGATGCAGCTCAATATTGTTGAAGGAAAGATGCAATATTTGTATGATGAGAATGGCAGGCGTTACCTTGATGCATTTGCTGGGATAGTGACGGTTTCTGCTGGACATTGCCATCCAGATGTTTTAAATGCAATCTTTGAGCAGAGCAAGCTTCTGCAGCATGCCACAACTATATATTTACACCATGCAATAGCTGATTTTGCAGAGGCATTGGCTTCAAAATTTCCTGGAAATCTAAAGGTAGTGTACTTTGTGAATTCTGGTTCAGAAGCAAATGAGTTAGCAATGCTGATGGCTCGTCTATACACTGGTAGTCTGGAAATGATTTCTCTGAGAAATGGATATCACGGAGGAAGTTCTAATACAATGAGTTTGACGGCACTCAACACATGGAAGTATCCGATTCCACAGGGTGAAATTCATCATGCTGTGAATCCAGATCCATACCGTGGAGTCTTTGGCTCTGATGCAAAAAGTTATGCTAAAGATGTGCAAGATCACATTGATTTTGGAACTGCAGGAAAAGTGGCCGGATTTATATCTGAAACAATTCAGGGTGTTGGAGGAGCAGTTGAACTGGCTCCTGGATACCTAAAATTGGTATATGACATTGTTCGCAAGGCTGGTGGTGTCTGCATTGCTGATGAAGTTCAAACTGGATTTGGCCGCACAGGAACTCATTATTGGGGCTTTGAAACACAGGGGGTCATTCCTGATATAGTTACTATGGCAAAGGGCATTGGAAATGGATTGCCATTGGGAGCAGTGGTGACAACACCAGAAATAGCAAGTGTACTAGCCCAGAAGACTCAATTCAACACTTATGGTGGAAACCCTGTATGCTCTGCAGGAGGACTTGCAGTGCTCAGAGTTATTGATAAAGAGAAACGTCAAGTTCATTCTGCAGATGTTGGCTCTCATTTGCTTGCTCGGTTGAGAGATCTTCAGCAAAGATATGAAATCATTGGAGATGTGAGAGGCCGGGGCTTAATGGTTGGGGTTGAACTTGTGACTGACAGGAATGAGAAGACACCTGCCAAGGCCGAAACTGCTATGTTGTTTGAGAAACTCAGAGAGCTTGGAGTTCTAGTTGGGAAAGGGGGACTTCATGGAAATGTTTTCAGGATAAAACCACCACTGTGTTTCACCAAAGATGATGCAGATTTTCTTGTCGATGCTTTGGACTATTCAATGTCAAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

454

Amino Acids

49.32

Weight (kDa)

6.89

Isoelectric Point (pI)

21.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	56 - 447	2.7e-89	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1201
Acc36I	ACCTGC	1 cut(s)	1201
AccB7I	CCANNNNNTGG	1 cut(s)	608
AciI	CCGC	1 cut(s)	826
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	2 cut(s)	687, 823
AcsI	RAATTY	3 cut(s)	380, 415, 576
AcuI	CTGAAG	1 cut(s)	1088
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	2 cut(s)	407, 954
AfiI	CCNNNNNNNGG	3 cut(s)	125, 608, 757
AgsI	TTSAA	9 cut(s)	25, 182, 378, 734, 812, 854, 976, 1163, 1350
AjnI	CCWGG	2 cut(s)	385, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
AleI	CACNNNNGTG	1 cut(s)	1297
AluBI	AGCT	6 cut(s)	44, 98, 169, 310, 353, 1237
AluI	AGCT	6 cut(s)	44, 98, 169, 310, 353, 1237
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	593
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	5 cut(s)	30, 687, 823, 1138, 1200
ApeKI	GCWGC	4 cut(s)	16, 63, 166, 316
ApoI	RAATTY	3 cut(s)	380, 415, 576
Asp700I	GAANNNNTTC	1 cut(s)	708
AsuC2I	CCSGG	1 cut(s)	1142
AsuHPI	GGTGA	3 cut(s)	584, 940, 1297
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
BbsI	GAAGAC	2 cut(s)	971, 1193
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	4 cut(s)	3, 50, 178, 328
BccI	CCATC	2 cut(s)	279, 445
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	387, 744
BciVI	GTATCC	2 cut(s)	567, 740
BcnI	CCSGG	1 cut(s)	1142
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	956, 1247
BfmI	CTRYAG	4 cut(s)	314, 675, 1005, 1062
BfuAI	ACCTGC	1 cut(s)	1201
BfuI	GTATCC	2 cut(s)	567, 740
BglII	AGATCT	1 cut(s)	1099
BisI	GCNGC	5 cut(s)	17, 64, 167, 317, 826
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	18, 65, 168, 318, 827
Bme1390I	CCNGG	3 cut(s)	387, 744, 1142
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	3 cut(s)	387, 744, 1142
BmsI	GCATC	6 cut(s)	153, 180, 220, 616, 1306, 1324
BpiI	GAAGAC	2 cut(s)	971, 1193
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	1142
BsaBI	GATNNNNATC	1 cut(s)	697
BsaJI	CCNNGG	3 cut(s)	607, 1141, 1197
BsaXI	ACNNNNNCTCC	6 cut(s)	714, 744, 912, 942, 1233, 1263
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 608, 757
Bse1I	ACTGG	3 cut(s)	472, 741, 820
Bse3DI	GCAATG	5 cut(s)	5, 89, 265, 450, 795
Bse8I	GATNNNNATC	1 cut(s)	697
BseBI	CCWGG	2 cut(s)	387, 744
BseDI	CCNNGG	3 cut(s)	607, 1141, 1197
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	3 cut(s)	125, 608, 757
BseMI	GCAATG	5 cut(s)	5, 89, 265, 450, 795
BseMII	CTCAG	3 cut(s)	482, 1039, 1243
BseNI	ACTGG	3 cut(s)	472, 741, 820
BseRI	GAGGAG	1 cut(s)	738
BseXI	GCAGC	4 cut(s)	3, 50, 178, 328
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	5 cut(s)	32, 689, 825, 1140, 1202
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiSI	CCGG	2 cut(s)	690, 1141
BslFI	GGGAC	1 cut(s)	1275
BslI	CCNNNNNNNGG	3 cut(s)	125, 608, 757
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	1275
BsnI	GGCC	5 cut(s)	32, 689, 825, 1140, 1202
Bsp1286I	GDGCHC	1 cut(s)	1026
Bsp143I	GATC	3 cut(s)	598, 655, 1099
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	826
BspANI	GGCC	5 cut(s)	32, 689, 825, 1140, 1202
BspCNI	CTCAG	3 cut(s)	483, 1038, 1242
BspLI	GGNNCC	1 cut(s)	741
BspMAI	CTGCAG	4 cut(s)	318, 679, 1009, 1066
BspMI	ACCTGC	1 cut(s)	1201
BspPI	GGATC	1 cut(s)	593
BsrDI	GCAATG	5 cut(s)	5, 89, 265, 450, 795
BsrI	ACTGG	3 cut(s)	472, 741, 820
BssECI	CCNNGG	3 cut(s)	607, 1141, 1197
BssMI	GATC	3 cut(s)	598, 655, 1099
BssT1I	CCWWGG	1 cut(s)	1197
Bst2UI	CCWGG	2 cut(s)	387, 744
Bst4CI	ACNGT	3 cut(s)	253, 608, 1299
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	5 cut(s)	96, 218, 308, 321, 1086
BstDEI	CTNAG	4 cut(s)	45, 491, 1025, 1229
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	3 cut(s)	601, 658, 1102
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	598, 655, 1099
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 307, 316, 359, 1208
BstNI	CCWGG	2 cut(s)	387, 744
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	385, 742, 1140
BstSFI	CTRYAG	4 cut(s)	314, 675, 1005, 1062
BstV1I	GCAGC	4 cut(s)	3, 50, 178, 328
BstV2I	GAAGAC	2 cut(s)	971, 1193
BstX2I	RGATCY	2 cut(s)	598, 1099
BstYI	RGATCY	2 cut(s)	598, 1099
BsuI	GTATCC	2 cut(s)	567, 740
BsuRI	GGCC	5 cut(s)	32, 689, 825, 1140, 1202
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	930, 1026
BtsIMutI	CAGTG	4 cut(s)	465, 930, 1026, 1295
BveI	ACCTGC	1 cut(s)	1201
Cac8I	GCNNGC	5 cut(s)	96, 218, 308, 321, 1086
CaiI	CAGNNNCTG	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	406, 953
CspCI	CAANNNNNGTGG	4 cut(s)	72, 107, 766, 801
CviAII	CATG	5 cut(s)	320, 344, 549, 584, 1268
CviQI	GTAC	2 cut(s)	406, 953
DdeI	CTNAG	4 cut(s)	45, 491, 1025, 1229
DpnI	GATC	3 cut(s)	600, 657, 1101
DpnII	GATC	3 cut(s)	598, 655, 1099
DraI	TTTAAA	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	572
EaeI	YGGCCR	2 cut(s)	687, 823
Eco130I	CCWWGG	1 cut(s)	1197
Eco147I	AGGCCT	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	1088
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	385, 742
EcoRV	GATATC	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	1197
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	1197
FaeI	CATG	5 cut(s)	323, 347, 552, 587, 1271
FalI	AAGNNNNNCTT	2 cut(s)	1248, 1280
FaqI	GGGAC	1 cut(s)	1275
FatI	CATG	5 cut(s)	319, 343, 548, 583, 1267
Fnu4HI	GCNGC	5 cut(s)	17, 64, 167, 317, 826
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	17, 64, 167, 317, 826
FspBI	CTAG	2 cut(s)	956, 1247
GluI	GCNGC	5 cut(s)	17, 64, 167, 317, 826
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	5 cut(s)	32, 689, 825, 1140, 1202
HapII	CCGG	2 cut(s)	690, 1141
Hin1II	CATG	5 cut(s)	323, 347, 552, 587, 1271
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	562, 592, 612, 967
HpaII	CCGG	2 cut(s)	690, 1141
HphI	GGTGA	3 cut(s)	584, 940, 1297
Hpy166II	GTNNAC	2 cut(s)	406, 953
Hpy188I	TCNGA	7 cut(s)	427, 492, 561, 625, 703, 1028, 1232
Hpy188III	TCNNGA	7 cut(s)	22, 73, 275, 476, 596, 872, 1282
Hpy8I	GTNNAC	2 cut(s)	406, 953
HpyAV	CCTTC	2 cut(s)	96, 176
HpyCH4III	ACNGT	3 cut(s)	253, 608, 1299
HpyCH4IV	ACGT	1 cut(s)	1048
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 307, 316, 359, 1208
HpyF3I	CTNAG	4 cut(s)	45, 491, 1025, 1229
HpySE526I	ACGT	1 cut(s)	1048
Hsp92II	CATG	5 cut(s)	323, 347, 552, 587, 1271
Kzo9I	GATC	3 cut(s)	598, 655, 1099
LmnI	GCTCC	3 cut(s)	725, 745, 920
Lsp1109I	GCAGC	4 cut(s)	3, 50, 178, 328
LweI	GCATC	6 cut(s)	153, 180, 220, 616, 1306, 1324
MaeI	CTAG	2 cut(s)	956, 1247
MaeII	ACGT	1 cut(s)	1048
MaeIII	GTNAC	5 cut(s)	221, 247, 880, 928, 1168
MalI	GATC	3 cut(s)	600, 657, 1101
MboI	GATC	3 cut(s)	598, 655, 1099
MboII	GAAGA	3 cut(s)	976, 1094, 1198
MflI	RGATCY	2 cut(s)	598, 1099
MhlI	GDGCHC	1 cut(s)	1026
MluCI	AATT	9 cut(s)	129, 147, 380, 415, 576, 708, 755, 971, 1358
MlyI	GAGTC	2 cut(s)	621, 961
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	6 cut(s)	6, 358, 503, 716, 1004, 1130
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	2 cut(s)	284, 1148
MslI	CAYNNNNRTG	3 cut(s)	276, 1272, 1297
MspI	CCGG	2 cut(s)	690, 1141
MspR9I	CCNGG	3 cut(s)	387, 744, 1142
MvaI	CCWGG	2 cut(s)	387, 744
MwoI	GCNNNNNNNGC	5 cut(s)	16, 307, 316, 359, 1208
NciI	CCSGG	1 cut(s)	1142
NdeII	GATC	3 cut(s)	598, 655, 1099
NlaIII	CATG	5 cut(s)	323, 347, 552, 587, 1271
NlaIV	GGNNCC	1 cut(s)	741
NmuCI	GTSAC	3 cut(s)	247, 928, 1168
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	1297
PaeI	GCATGC	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	1201
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	562, 592
PflMI	CCANNNNNTGG	1 cut(s)	608
PfoI	TCCNGGA	2 cut(s)	385, 742
PkrI	GCNGC	5 cut(s)	18, 65, 168, 318, 827
PleI	GAGTC	2 cut(s)	620, 961
PpsI	GAGTC	2 cut(s)	620, 961
Psp6I	CCWGG	2 cut(s)	385, 742
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	2 cut(s)	385, 742
PspN4I	GGNNCC	1 cut(s)	741
PstI	CTGCAG	4 cut(s)	318, 679, 1009, 1066
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	598, 1099
RsaI	GTAC	2 cut(s)	407, 954
RsaNI	GTAC	2 cut(s)	406, 953
RseI	CAYNNNNRTG	3 cut(s)	276, 1272, 1297
SaqAI	TTAA	2 cut(s)	284, 1148
SatI	GCNGC	5 cut(s)	17, 64, 167, 317, 826
Sau3AI	GATC	3 cut(s)	598, 655, 1099
SchI	GAGTC	2 cut(s)	621, 961
ScrFI	CCNGG	3 cut(s)	387, 744, 1142
SduI	GDGCHC	1 cut(s)	1026
SfaNI	GCATC	6 cut(s)	153, 180, 220, 616, 1306, 1324
SfcI	CTRYAG	4 cut(s)	314, 675, 1005, 1062
SmiMI	CAYNNNNRTG	3 cut(s)	276, 1272, 1297
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	9 cut(s)	129, 147, 380, 415, 576, 708, 755, 971, 1358
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	826
SspI	AATATT	2 cut(s)	175, 197
SspMI	CTAG	2 cut(s)	956, 1247
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	385, 742, 1140
StyI	CCWWGG	1 cut(s)	1197
TaaI	ACNGT	3 cut(s)	253, 608, 1299
TaiI	ACGT	1 cut(s)	1051
TaqI	TCGA	2 cut(s)	74, 1332
TasI	AATT	9 cut(s)	129, 147, 380, 415, 576, 708, 755, 971, 1358
TatI	WGTACW	2 cut(s)	405, 952
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	2 cut(s)	562, 592
Tru1I	TTAA	2 cut(s)	284, 1148
Tru9I	TTAA	2 cut(s)	284, 1148
TscAI	CASTG	4 cut(s)	472, 930, 1026, 1302
TseFI	GTSAC	3 cut(s)	247, 928, 1168
TseI	GCWGC	4 cut(s)	16, 63, 166, 316
Tsp45I	GTSAC	3 cut(s)	247, 928, 1168
TspDTI	ATGAA	6 cut(s)	78, 569, 819, 1046, 1131, 1256
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	4 cut(s)	472, 930, 1026, 1302
Van91I	CCANNNNNTGG	1 cut(s)	608
XapI	RAATTY	3 cut(s)	380, 415, 576
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	956, 1247
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.