Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003402

Physical Location & Seq

Genomic Coordinates Reverse (-)

42763472 .. 42773875

Gene Structure 10404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTATATTCATGATTATTTGTTGAAAAGGAAATTGACCGCTTCTGCAAATACATTTATGACTGAAGGGAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCAGGAGGATTCCTCTTTGAATGGTGGTCTGTTTTCTGGGACATATTCATAGCAAGGACAAATGAGAAGCACTCAGAGGCTGCTGCATCTTACATTGAGCAAATTAAGACGAGGGAGCAACAACAGTTGCAAATGCAGCAGATGCAGATATTGCAGCAGCGTAATGCTCAGTTACAGCGTAGAGATCCAAATGCTTTAAATGCTATAAACCCTGAAGGGGTAATGGGGCAACCTTCAGCCAGTGTGCTAGCCATGAAAATGTATGAAGAACGCATGAAACATCCTCACTCAATGGATGCTGAAGCATCCCCAGGTCTTACTGATGCCAATAGGATTGCCCTTCTCAAATCAGCTACAAATGCACAAGGCCAGTTGACACAAAGCAATTCCGGAAACATGTCTGCTGCTTTGCAGCAAATGCAAGCACGCAATCCTTTGACCACTGACATCAAAAGTGAAGTTAACTTAGGTACAGCTCAGAGAAGTTTGCCTATGGATCCTTCATCGATTTATGGACAAGCAATTTTACAGTCAAAATCTGGATTGGGTGGTGCAGGATTGAATCAAGGTGTCACAGGTCTTCCTTTGAAGGGTTGGCCTCTTACTGGAATCGACCAATTACGACCAAACTTGGGTGTACAAGTACAGAAGTCAAATTTTCAGACCCAAAGTCAATTCCTTTTACCACCTCAACAACAGCAAGTCTTGGCACAAGCCCAGGCTCATGCACAAAACAACCTTGGAAATTCAACAAGCTACGGAGATCTGGATCCTCGTAGGTTTTCTGGTTTGCCTAGGAGTGGCATGAATGCAAAAGATGGTCCATCTGCAATGCAGTCAAGTTCACCAAAGATAAAAATGCCTCAGATGCAACAGTCTTCCTCCCACTCCCAACAACATGACCAATTGCAGCAGCAGCCATTACAACAGAATAACAGAAAAAGGAAACAACACTCTTCTTCTGGACCTGCCAACAGCAACAACACGGGAAACACTGTTGGCCGTTCCCCTGGTTCTCCAGCATCAACTCACACACCAGGTGATGGAATTAACACAGCCAGTAGTCTGCAGCATGTTAACAACATTCCGAAAAGCTTGATGATGTATGGTCCAGAAGGAACAGGAGGTCTTCCTTCATCTTCCAATTTATTGGAAGACATGGAACGATTTGGAGATGTTGGTACCTTAGAAGATAATGTGGAATCGTTTTTGTCACCTGATGGGGGAGATGGGAGGGATGTATATGGGACACTGAAGCAGAGTCCTAGTGAGCCCAGGAAGGAGTCTTCTAAAGGTTTTACCTTTGGTGAAGTTGGTTGCATAAGGACCAGAAGCAGCAAAGTGACCTGCTGTCACTTTTCTTCAGATGGGAAGTTGCTGGCTAGTGCTGGACATGACAAAAAGGTTGTCCTCTGGAACATGGATACCCTGCAGACAGAGAGCACTCCTGAAGAACACAAGTTGGTCATTACAGATGTTCGTTTTAGACCAAATTCATCTCAACTGGCAACAGCTTCAGTTGACAAAACTGTGCGATTATGGGATGCAGCCAATCCAAACTATTGTTTGCAAGCATATACAGGGCACAGCTCACCTGTTATGTCCCTTGACTTCCACCCTAAGAAGACCGATCTATTTTGTTTCTGTGATAGCGACAATGAAATTCGTTACTGGAATGTCAGTCCATTCTCCTGTACTCGTATTTCAAAGGGAGCTACTGCACAAGTTAGATTTCAACCAAGAGTGGGACAATTCCTGGCAGCAGCATCAGATAAAATTGTTTCCATCTTTGACGTCGAAACTGACAGGCAAACACACTCATTCCAGGGGCACTCTGAAATGGTAAACTACATTTGTTGGGATGCAAATGGAGATTTTGTGGCGTCTGTCAGTCAAAGTTTGGTGAAGATTTGGTCGTTAGCTTCAGGACAGTGTATTCAGGAGCTTGGCTCAAATGGGAACCAGTTTCACTCGTGCGTTTTTCATCCAAGTTATTCAACTCTCTTGGTCATTGGAGGAATCTCGTCCTTGGAGCTGTGGAACATGGCTGAGAATAAGAGCATGACAATTCCGGCACATGAGAATATAATCTCAGCTCTGACTCAGTCATCCGAAACCGGAATGGTTGCATCTGCAAGTCACGATAGCTCCGTCAAGTTATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

769

Amino Acids

84.1

Weight (kDa)

6.61

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	484 - 615	6.6e-13	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	484 - 687	7.5e-14	MABP1/WDR62 second WD40 domain
EIF3I	PF24805	487 - 565	4.8e-07	EIF3I
Beta-prop_WDR5	PF25175	490 - 615	5.4e-27	WDR5 beta-propeller domain
WD40_Prp19	PF24814	490 - 762	1.6e-37	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	492 - 644	4e-15	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	492 - 589	7.8e-08	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	492 - 605	7.6e-10	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	492 - 609	7.4e-15	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	492 - 567	2.3e-11	WDHD1 first WD40 domain
WD40	PF00400	492 - 520	6.9e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	492 - 607	1.3e-21	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	492 - 566	7.4e-16	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	494 - 593	9.8e-08	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	524 - 679	4.7e-13	CDC20/Fizzy WD40 domain
WD40	PF00400	529 - 562	2.3e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	533 - 615	3.3e-14	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	569 - 679	3.9e-07	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	572 - 717	9.3e-14	WDHD1 first WD40 domain
WDR55	PF24796	578 - 734	9.6e-09	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	598 - 695	5.5e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	600 - 767	3e-07	WDR36/Utp21 first beta-propeller
Beta-prop_EML_2	PF23414	616 - 693	6.8e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	617 - 769	1.4e-17	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	618 - 768	4.9e-25	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	621 - 768	4.3e-20	THOC3 beta-propeller domain
Beta-prop_WDR19_1st	PF23389	623 - 766	3.6e-06	WDR19 first beta-propeller
WD40_CDC20-Fz	PF24807	630 - 768	1.2e-09	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	631 - 753	6.3e-08	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	663 - 769	3.7e-09	WDR3 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39660 AT4G39660
fragaria_vesca	FvH4_1g21920
malus_domestica	MD15G1330500.v1.1
prunus_persica	Prupe.1G573800_v2.0.a1 Prupe.1G573800_v2.0.a1 Prupe.6G177100_v2.0.a1 Prupe.6G177100_v2.0.a1
pyrus_communis	pycom15g29470
rosa_chinensis	RchiOBHm_Chr2g0115931 RchiOBHm_Chr6g0298301
rosa_laevigata	RLG00000011518 RLG00000018224
rosa_multiflora	Rmu_sc0003420.1_g000003 Rmu_ssc0000197.1_g000006
rosa_roxburghii	Rroxscaffold_2G00127710 Rroxscaffold_2G00128500 Rroxscaffold_7G00169760
rosa_rugosa	Rorug02G0201300 Rorug06G0279900 Rorug06G0280000 Rorug06G0280100 Rorug06G0280200 Rorug06G0280300 Rorug06G0280300 Rorug06G0280400
rosa_samantha	Rh2AG258100 Rh2CG264700 Rh2DG266400 Rh6AG390800 Rh6BG399000 Rh6CG404900 Rh6DG391400
rosa_wichuraiana	Rw2G020240 Rw6G034120 Rw6G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1938
Acc36I	ACCTGC	2 cut(s)	1117, 1496
Acc65I	GGTACC	1 cut(s)	1322
AccB1I	GGYRCC	1 cut(s)	1322
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccIII	TCCGGA	1 cut(s)	530
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	6 cut(s)	116, 320, 632, 645, 905, 918
AcoI	YGGCCR	1 cut(s)	1141
AcsI	RAATTY	4 cut(s)	796, 886, 1633, 1803
AcuI	CTGAAG	9 cut(s)	123, 360, 375, 462, 1415, 1488, 1611, 1641, 2049
AcyI	GRCGYC	2 cut(s)	1935, 2024
AdeI	CACNNNGTG	1 cut(s)	1181
AfaI	GTAC	5 cut(s)	613, 780, 786, 1324, 1837
AfiI	CCNNNNNNNGG	8 cut(s)	358, 731, 746, 773, 941, 1184, 1364, 1886
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	8 cut(s)	64, 161, 703, 730, 891, 1848, 1877, 2139
AhdI	GACNNNNNGTC	2 cut(s)	810, 1491
AjnI	CCWGG	8 cut(s)	142, 451, 858, 1150, 1177, 1415, 1896, 1965
Alw21I	GWGCWC	1 cut(s)	1586
AlwI	GGATC	6 cut(s)	116, 320, 632, 645, 905, 918
AlwNI	CAGNNNCTG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	530
AoxI	GGCC	3 cut(s)	508, 737, 1141
ApoI	RAATTY	4 cut(s)	796, 886, 1633, 1803
ArsI	GACNNNNNNTTYG	2 cut(s)	1533, 1565
Asp718I	GGTACC	1 cut(s)	1322
AspA2I	CCTAGG	1 cut(s)	935
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	962, 1106, 1250, 1467
AsuHPI	GGTGA	6 cut(s)	978, 1193, 1347, 1460, 1725, 2056
AsuNHI	GCTAGC	1 cut(s)	388
AvaII	GGWCC	4 cut(s)	962, 1106, 1250, 1467
AvrII	CCTAGG	1 cut(s)	935
BaeGI	GKGCMC	2 cut(s)	1728, 1974
BamHI	GGATCC	2 cut(s)	637, 910
BanI	GGYRCC	1 cut(s)	1322
BanII	GRGCYC	1 cut(s)	1416
BauI	CACGAG	1 cut(s)	2113
BbsI	GAAGAC	6 cut(s)	713, 1011, 1262, 1302, 1419, 1772
Bbv12I	GWGCWC	1 cut(s)	1586
BccI	CCATC	7 cut(s)	953, 973, 1178, 1355, 1364, 1502, 1934
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
BciVI	GTATCC	1 cut(s)	1558
BfaI	CTAG	4 cut(s)	389, 936, 1407, 1524
BfmI	CTRYAG	3 cut(s)	117, 1208, 1571
BfuAI	ACCTGC	2 cut(s)	1117, 1496
BfuI	GTATCC	1 cut(s)	1558
BglII	AGATCT	1 cut(s)	904
BlnI	CCTAGG	1 cut(s)	935
Bme1390I	CCNGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
Bme18I	GGWCC	4 cut(s)	962, 1106, 1250, 1467
BmeRI	GACNNNNNGTC	2 cut(s)	810, 1491
BmgT120I	GGNCC	4 cut(s)	962, 1106, 1250, 1467
BmiI	GGNNCC	4 cut(s)	639, 912, 1324, 2102
BmrFI	CCNGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
BmtI	GCTAGC	1 cut(s)	392
BpiI	GAAGAC	6 cut(s)	713, 1011, 1262, 1302, 1419, 1772
BplI	GAGNNNNNCTC	6 cut(s)	138, 170, 197, 229, 2075, 2107
BpmI	CTGGAG	1 cut(s)	1143
Bsa29I	ATCGAT	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	909
BsaHI	GRCGYC	2 cut(s)	1935, 2024
BsaJI	CCNNGG	8 cut(s)	451, 858, 880, 935, 1150, 1415, 1966, 2169
BsaWI	WCCGGW	2 cut(s)	530, 2258
BsaXI	ACNNNNNCTCC	4 cut(s)	2004, 2034, 2273, 2303
Bsc4I	CCNNNNNNNGG	8 cut(s)	358, 731, 746, 773, 941, 1184, 1364, 1886
Bse1I	ACTGG	8 cut(s)	125, 381, 511, 751, 1200, 1650, 1817, 2104
Bse3DI	GCAATG	1 cut(s)	978
Bse8I	GATNNNNATC	1 cut(s)	909
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
BseCI	ATCGAT	1 cut(s)	647
BseDI	CCNNGG	8 cut(s)	451, 858, 880, 935, 1150, 1415, 1966, 2169
BseGI	GGATG	8 cut(s)	421, 442, 446, 1384, 1690, 2008, 2125, 2249
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	8 cut(s)	358, 731, 746, 773, 941, 1184, 1364, 1886
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	7 cut(s)	228, 323, 632, 1019, 2181, 2247, 2258
BseNI	ACTGG	8 cut(s)	125, 381, 511, 751, 1200, 1650, 1817, 2104
BseSI	GKGCMC	2 cut(s)	1728, 1974
BsgI	GTGCAG	2 cut(s)	714, 1845
BshFI	GGCC	3 cut(s)	510, 739, 1143
BshNI	GGYRCC	1 cut(s)	1322
BshVI	ATCGAT	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	1586
BsiSI	CCGG	3 cut(s)	531, 2213, 2259
BslFI	GGGAC	4 cut(s)	194, 1402, 1729, 1902
BslI	CCNNNNNNNGG	8 cut(s)	358, 731, 746, 773, 941, 1184, 1364, 1886
BsmFI	GGGAC	4 cut(s)	194, 1402, 1729, 1902
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	3 cut(s)	510, 739, 1143
Bsp1286I	GDGCHC	4 cut(s)	1416, 1586, 1728, 1974
Bsp13I	TCCGGA	1 cut(s)	530
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	3 cut(s)	510, 739, 1143
BspCNI	CTCAG	7 cut(s)	227, 322, 631, 1018, 2182, 2246, 2257
BspDI	ATCGAT	1 cut(s)	647
BspEI	TCCGGA	1 cut(s)	530
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	4 cut(s)	639, 912, 1324, 2102
BspMAI	CTGCAG	2 cut(s)	1212, 1575
BspMI	ACCTGC	2 cut(s)	1117, 1496
BspOI	GCTAGC	1 cut(s)	392
BspPI	GGATC	6 cut(s)	116, 320, 632, 645, 905, 918
BspT107I	GGYRCC	1 cut(s)	1322
BsrDI	GCAATG	1 cut(s)	978
BsrGI	TGTACA	1 cut(s)	778
BsrI	ACTGG	8 cut(s)	125, 381, 511, 751, 1200, 1650, 1817, 2104
BssECI	CCNNGG	8 cut(s)	451, 858, 880, 935, 1150, 1415, 1966, 2169
BssMI	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
BssNI	GRCGYC	2 cut(s)	1935, 2024
BssSI	CACGAG	1 cut(s)	2113
BssT1I	CCWWGG	3 cut(s)	880, 935, 2169
Bst2BI	CACGAG	1 cut(s)	2113
Bst2UI	CCWGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
Bst4CI	ACNGT	6 cut(s)	267, 672, 1017, 1138, 1672, 2073
Bst6I	CTCTTC	1 cut(s)	1102
BstACI	GRCGYC	2 cut(s)	1935, 2024
BstAPI	GCANNNNNTGC	4 cut(s)	137, 283, 292, 559
BstAUI	TGTACA	1 cut(s)	778
BstC8I	GCNNGC	5 cut(s)	390, 564, 568, 1521, 1713
BstF5I	GGATG	8 cut(s)	421, 442, 446, 1384, 1690, 2008, 2125, 2249
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	124, 328, 640, 907, 913, 1774
BstMBI	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
BstMWI	GCNNNNNNNGC	9 cut(s)	137, 277, 283, 292, 341, 500, 559, 1009, 1057
BstNI	CCWGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
BstNSI	RCATGY	2 cut(s)	541, 1217
BstSCI	CCNGG	8 cut(s)	142, 451, 858, 1150, 1177, 1415, 1896, 1965
BstSFI	CTRYAG	3 cut(s)	117, 1208, 1571
BstSLI	GKGCMC	2 cut(s)	1728, 1974
BstV2I	GAAGAC	6 cut(s)	713, 1011, 1262, 1302, 1419, 1772
BstX2I	RGATCY	5 cut(s)	121, 325, 637, 904, 910
BstXI	CCANNNNNNTGG	1 cut(s)	1291
BstYI	RGATCY	5 cut(s)	121, 325, 637, 904, 910
Bsu15I	ATCGAT	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	1558
BsuRI	GGCC	3 cut(s)	510, 739, 1143
BsuTUI	ATCGAT	1 cut(s)	647
BtsCI	GGATG	8 cut(s)	421, 442, 446, 1384, 1690, 2008, 2125, 2249
BtsIMutI	CAGTG	5 cut(s)	388, 582, 1134, 1391, 2078
BveI	ACCTGC	2 cut(s)	1117, 1496
Cac8I	GCNNGC	5 cut(s)	390, 564, 568, 1521, 1713
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	962, 1106, 1250, 1467
ClaI	ATCGAT	1 cut(s)	647
CseI	GACGC	1 cut(s)	2013
CsiI	ACCWGGT	1 cut(s)	1177
Csp6I	GTAC	5 cut(s)	612, 779, 785, 1323, 1836
CviQI	GTAC	5 cut(s)	612, 779, 785, 1323, 1836
DpnI	GATC	6 cut(s)	123, 327, 639, 906, 912, 1773
DpnII	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	1181
DriI	GACNNNNNGTC	2 cut(s)	810, 1491
EaeI	YGGCCR	1 cut(s)	1141
Eam1104I	CTCTTC	1 cut(s)	1102
Eam1105I	GACNNNNNGTC	2 cut(s)	810, 1491
EarI	CTCTTC	1 cut(s)	1102
Eco130I	CCWWGG	3 cut(s)	880, 935, 2169
Eco24I	GRGCYC	1 cut(s)	1416
Eco47I	GGWCC	4 cut(s)	962, 1106, 1250, 1467
Eco57I	CTGAAG	9 cut(s)	123, 360, 375, 462, 1415, 1488, 1611, 1641, 2049
EcoRII	CCWGG	8 cut(s)	142, 451, 858, 1150, 1177, 1415, 1896, 1965
EcoT14I	CCWWGG	3 cut(s)	880, 935, 2169
EcoT38I	GRGCYC	1 cut(s)	1416
ErhI	CCWWGG	3 cut(s)	880, 935, 2169
FaqI	GGGAC	4 cut(s)	194, 1402, 1729, 1902
FokI	GGATG	8 cut(s)	408, 433, 449, 1391, 1697, 2015, 2112, 2236
FriOI	GRGCYC	1 cut(s)	1416
FspBI	CTAG	4 cut(s)	389, 936, 1407, 1524
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	1143
HaeIII	GGCC	3 cut(s)	510, 739, 1143
HapII	CCGG	3 cut(s)	531, 2213, 2259
HgaI	GACGC	1 cut(s)	2013
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	1935, 2024
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	4 cut(s)	516, 604, 1219, 1663
HindII	GTYRAC	4 cut(s)	516, 604, 1219, 1663
HindIII	AAGCTT	1 cut(s)	1234
HinfI	GANTC	8 cut(s)	150, 703, 750, 1343, 1402, 1424, 2160, 2242
HpaI	GTTAAC	2 cut(s)	604, 1219
HpaII	CCGG	3 cut(s)	531, 2213, 2259
HphI	GGTGA	6 cut(s)	978, 1193, 1347, 1460, 1725, 2056
Hpy166II	GTNNAC	7 cut(s)	516, 604, 779, 986, 1219, 1663, 1987
Hpy8I	GTNNAC	7 cut(s)	516, 604, 779, 986, 1219, 1663, 1987
Hpy99I	CGWCG	1 cut(s)	1940
HpyCH4III	ACNGT	6 cut(s)	267, 672, 1017, 1138, 1672, 2073
HpyCH4IV	ACGT	1 cut(s)	1935
HpyF10VI	GCNNNNNNNGC	9 cut(s)	137, 277, 283, 292, 341, 500, 559, 1009, 1057
HpySE526I	ACGT	1 cut(s)	1935
Hsp92I	GRCGYC	2 cut(s)	1935, 2024
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	530
KpnI	GGTACC	1 cut(s)	1326
KspAI	GTTAAC	2 cut(s)	604, 1219
Kzo9I	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
LmnI	GCTCC	5 cut(s)	256, 1853, 2083, 2173, 2294
MabI	ACCWGGT	1 cut(s)	1177
MaeI	CTAG	4 cut(s)	389, 936, 1407, 1524
MaeII	ACGT	1 cut(s)	1935
MaeIII	GTNAC	7 cut(s)	312, 712, 1353, 1483, 1493, 1808, 2279
MalI	GATC	6 cut(s)	123, 327, 639, 906, 912, 1773
MboI	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
MfeI	CAATTG	2 cut(s)	132, 1046
MflI	RGATCY	5 cut(s)	121, 325, 637, 904, 910
MhlI	GDGCHC	4 cut(s)	1416, 1586, 1728, 1974
MlyI	GAGTC	3 cut(s)	1411, 1433, 2236
MroI	TCCGGA	1 cut(s)	530
MseI	TTAA	5 cut(s)	246, 338, 603, 1191, 1218
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	3 cut(s)	531, 2213, 2259
MspR9I	CCNGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
MunI	CAATTG	2 cut(s)	132, 1046
Mva1269I	GAATGC	1 cut(s)	955
MvaI	CCWGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
MwoI	GCNNNNNNNGC	9 cut(s)	137, 277, 283, 292, 341, 500, 559, 1009, 1057
NdeII	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
NheI	GCTAGC	1 cut(s)	388
NlaIV	GGNNCC	4 cut(s)	639, 912, 1324, 2102
NmuCI	GTSAC	5 cut(s)	712, 1353, 1483, 1493, 2279
NspI	RCATGY	2 cut(s)	541, 1217
PagI	TCATGA	1 cut(s)	49
PciI	ACATGT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	2289
PctI	GAATGC	1 cut(s)	955
PfeI	GAWTC	5 cut(s)	150, 703, 750, 1343, 2160
PflFI	GACNNNGTC	1 cut(s)	2245
PflMI	CCANNNNNTGG	1 cut(s)	1184
PleI	GAGTC	3 cut(s)	1410, 1432, 2236
PpsI	GAGTC	3 cut(s)	1410, 1432, 2236
PscI	ACATGT	1 cut(s)	537
Psp6I	CCWGG	8 cut(s)	142, 451, 858, 1150, 1177, 1415, 1896, 1965
PspGI	CCWGG	8 cut(s)	142, 451, 858, 1150, 1177, 1415, 1896, 1965
PspN4I	GGNNCC	4 cut(s)	639, 912, 1324, 2102
PspPI	GGNCC	4 cut(s)	962, 1106, 1250, 1467
PstI	CTGCAG	2 cut(s)	1212, 1575
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	5 cut(s)	121, 325, 637, 904, 910
PsyI	GACNNNGTC	1 cut(s)	2245
RsaI	GTAC	5 cut(s)	613, 780, 786, 1324, 1837
RsaNI	GTAC	5 cut(s)	612, 779, 785, 1323, 1836
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	5 cut(s)	246, 338, 603, 1191, 1218
Sau3AI	GATC	6 cut(s)	121, 325, 637, 904, 910, 1771
Sau96I	GGNCC	4 cut(s)	962, 1106, 1250, 1467
SchI	GAGTC	3 cut(s)	1411, 1433, 2236
ScrFI	CCNGG	8 cut(s)	144, 453, 860, 1152, 1179, 1417, 1898, 1967
SduI	GDGCHC	4 cut(s)	1416, 1586, 1728, 1974
SexAI	ACCWGGT	1 cut(s)	1177
SfcI	CTRYAG	3 cut(s)	117, 1208, 1571
SinI	GGWCC	4 cut(s)	962, 1106, 1250, 1467
SmiMI	CAYNNNNRTG	1 cut(s)	398
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	4 cut(s)	389, 936, 1407, 1524
StyD4I	CCNGG	8 cut(s)	142, 451, 858, 1150, 1177, 1415, 1896, 1965
StyI	CCWWGG	3 cut(s)	880, 935, 2169
TaaI	ACNGT	6 cut(s)	267, 672, 1017, 1138, 1672, 2073
TaiI	ACGT	1 cut(s)	1938
TaqI	TCGA	3 cut(s)	647, 753, 1938
TaqII	GACCGA	1 cut(s)	1784
TatI	WGTACW	3 cut(s)	778, 784, 1835
TfiI	GAWTC	5 cut(s)	150, 703, 750, 1343, 2160
Tru1I	TTAA	5 cut(s)	246, 338, 603, 1191, 1218
Tru9I	TTAA	5 cut(s)	246, 338, 603, 1191, 1218
TscAI	CASTG	5 cut(s)	388, 589, 1141, 1398, 2078
TseFI	GTSAC	5 cut(s)	712, 1353, 1483, 1493, 2279
Tsp45I	GTSAC	5 cut(s)	712, 1353, 1483, 1493, 2279
TspGWI	ACGGA	2 cut(s)	915, 2281
TspRI	CASTG	5 cut(s)	388, 589, 1141, 1398, 2078
Tth111I	GACNNNGTC	1 cut(s)	2245
Van91I	CCANNNNNTGG	1 cut(s)	1184
VpaK11BI	GGWCC	4 cut(s)	962, 1106, 1250, 1467
XapI	RAATTY	4 cut(s)	796, 886, 1633, 1803
XceI	RCATGY	2 cut(s)	541, 1217
XmaJI	CCTAGG	1 cut(s)	935
XspI	CTAG	4 cut(s)	389, 936, 1407, 1524
ZraI	GACGTC	1 cut(s)	1936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.